| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_6341 |
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| Symbol | |
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| ID | 5320644 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009622 |
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| Strand | - |
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| Start bp | 8597 |
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| End bp | 10486 |
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| Gene Length | 1890 bp |
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| Protein Length | 629 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640777935 |
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| Product | putative PAS/PAC sensor protein |
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| Protein accession | YP_001314867 |
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| Protein GI | 150378273 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG1352] Methylase of chemotaxis methyl-accepting proteins |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.433344 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.230755 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCCCGGTT GTGCGACAGG CGAAGAGGTG TATTCGATTG GAATTCTCAT GCGCGAGCAT
ATGGAAAGAC TCTCCGAAGT GCCACGCGTG CAGATTTTCG CGACGGACAT CGATGAGCCG
GCTCTCAGCG TTGCCCGCGC GGGACGATAT CCGGAAGCAC TGCTGAAGGG CATGACGCCG
GAACGAAAAC GGCGGTTCTT CCACAATCAC GGCTCCAGTT TCGTCGTCAG CCATGAGGTG
CGCGAACTCT GTATCTTTTC TCCCCATAGC GTCACGCGCG ACCCCCCCTT CTCGCGCATG
GATCTGGTGT CCTGCCGCAA TCTGCTAATC TATTTGGGAC CCGACATTCA GAAACGTGTC
ATCCCTACGT CCCATTACGC GCTCAAGCCG GGCGGCTATC TGTTCCTTGG AACGTCGGAA
AGCATCAGCC AGCACAGCGA TCTCTTCGTA ACCCTCGACA AGAAGAACCG CTTATTCCAA
TGGCGAGAAA ATGCCGCGGC GACACCGCAC TTCTCGACTC TGATAGGCCA TCCGCGCGCG
GCCGACGCCG GTTTGGGCCG CGAGCAAAGG GGCACGTCCT ATTCATTGCG ACAGTCAGTT
GAGAGCCATG TCCTCGAGCG GTTCGCGCCG GCTCATGTTG TGGTAAATGC CGACGGCGAT
GCGGTATATT TCTCGGCCCG CACAGGAAAA TATCTCGAAG CGCCGCAGGG GGCGCCAAGC
CGGCAAATCC TGACCATCGC CCGACGAGGC CTCAGACTTG AATTGCGCTC AGCCTTGCGG
GAATCCGTTT CGACGCGAAA CACGGTGGTA CGCTCGAATG TCGTTGTCGA AGACGATGAC
GGCGGGGCTC AAGCCTTGAC GGTAACGGTC GAGCCACTGC CGAACAAGGG CAACGGGGAA
CAGCTTTTCC TGATCGTCTT CAATCCGGTC GAGGCGACGC AAAACCGGCA GGAGATTAAC
AGGCAAGGAG AGGAAGCTGA TGTCGCCGCG GATCTCGATC GCGAGCTGCG CGACACGCGA
GAGCGCCTGC AGTCGATGAT CGAGGAATAC GAGACGGCGC TTGAAGAGTT GAAGGCTTCA
AACGAAGAGC TTGTGTCGGT CAACGAAGAG GCACAATCGA CCAACGAGGA GTTGGAGGCA
TCCAAGGAGG AGATGCAATC CCTCAATGAA GAGCTGAACG CCATCAATGC GGAACTCAGC
GGAAAGGTCG AGGAACTCGA TCGCGCAAAC AGCGATCTCA AAAATCTCTT CGAGAGCACC
CAGATCGCGA CGATCTTTCT CGACCGGAAT CTCGTCATAC GAAATTTTAC TCCTGCCGCC
TCCTCTTTCT TCAGCCTTCG CCAATCGGAT GTCGGTCGAC CGCTGACCGA ACTCGCCAAT
CAGCTGCATT ACCCGGAGCT GAAACAGCAC ATCGCGTCGG TCTTCGATAC CGGCGACCTC
GTCGAGCACC AGCTTGCCAG CGATCAGGAC GGCAAACACT ATCTGGTTCG CCTAATCCCC
TATCGTGACT GTGCCGGCCG CATTCAGGGG GTGGTGGTCA CACTCATCGA TGTGACAACG
CTCGCCAAAG CCGAGGAGCA CCAGCGCATG CTGATCTCCG AACTCAATCA CCGCGTCAAG
AACATGTTGG CGGTGGTAAT CAGCATCGCC AACCACACGT TGAAAGGGGC GCCGTCTCCG
AAAGACTTCA ACGCGGCGCT GAGCGGCCGC CTCCACGCGA TGGCGCGCGC ATACAACGTC
TTGACCAACT CGAATTGGAC CGCGGCCCCC ATCGAAGATC TGGTCAGGCA GGAACTGGGT
AAGCGCGATT TTCCCCGCAC ATTGACGCCG GCGATTTCGA CGGGTCGTCT TGGCGTTGGC
CATCTGGTCA GGCGGTGGCA GTCTGTGTGA
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| Protein sequence | MPGCATGEEV YSIGILMREH MERLSEVPRV QIFATDIDEP ALSVARAGRY PEALLKGMTP
ERKRRFFHNH GSSFVVSHEV RELCIFSPHS VTRDPPFSRM DLVSCRNLLI YLGPDIQKRV
IPTSHYALKP GGYLFLGTSE SISQHSDLFV TLDKKNRLFQ WRENAAATPH FSTLIGHPRA
ADAGLGREQR GTSYSLRQSV ESHVLERFAP AHVVVNADGD AVYFSARTGK YLEAPQGAPS
RQILTIARRG LRLELRSALR ESVSTRNTVV RSNVVVEDDD GGAQALTVTV EPLPNKGNGE
QLFLIVFNPV EATQNRQEIN RQGEEADVAA DLDRELRDTR ERLQSMIEEY ETALEELKAS
NEELVSVNEE AQSTNEELEA SKEEMQSLNE ELNAINAELS GKVEELDRAN SDLKNLFEST
QIATIFLDRN LVIRNFTPAA SSFFSLRQSD VGRPLTELAN QLHYPELKQH IASVFDTGDL
VEHQLASDQD GKHYLVRLIP YRDCAGRIQG VVVTLIDVTT LAKAEEHQRM LISELNHRVK
NMLAVVISIA NHTLKGAPSP KDFNAALSGR LHAMARAYNV LTNSNWTAAP IEDLVRQELG
KRDFPRTLTP AISTGRLGVG HLVRRWQSV
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