| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_3393 |
|---|
| Symbol | |
|---|
| ID | 4484079 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | + |
|---|
| Start bp | 4229013 |
|---|
| End bp | 4230650 |
|---|
| Gene Length | 1638 bp |
|---|
| Protein Length | 545 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 639724141 |
|---|
| Product | putative PAS/PAC sensor protein |
|---|
| Protein accession | YP_867285 |
|---|
| Protein GI | 117926668 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2202] FOG: PAS/PAC domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGATATCGG GGTCTCTGAA CGGTTACGTT TCTACAGGTT TGACCAAGGT ATTTCGTGAA
GGCGAGAGCG TTACTTTTAC CAACATACGC TTCAATGGTC AGGGGGGACG CGCGAACCGG
CTGCTTAATA TCCATATTAA ACCGGTTATT GGACGCAAAA ACCAATCCCC CCTTGCGGCA
CTCTTTATCC AGGAACAGGC CGCTGAAACG CGCCTTAATC CCGCCGATGA CGCTTATGAT
TTTAACCAAG AGACCATGCA GCGCATCGCG GATCTTGAGC AAGAGCTGCA ACTGACCCGG
GAAAATTTAC AGGCGACCAT CGAGGAGTTG GAGACCTCTA ACGAAGAGCT GCAAGCGACC
AATGAAGAGC TGCTGGCAAG CAATGAAGAG TTGCAATCCA CCAACGAAGA GCTGCAATCG
GTCAACGAGG AGCTCTATAC GGTCAATGCG GAATATCAGA ATAAGATCAT TGAGTTGACC
GAGGTTAATA ACGACTTGGA TAACCTGATG AACAGCACCC AAGTGGTCTC GGTGTTTTTG
GATGAAGATC TGGATGTCAG AAAATTCACC ACCAGTTCCG CCAAGCTCTT TAATATTTTA
GAGAGCGATA TTGGCCGCCC GCTGGCCCAC CTTTCCCATA ATCTGCAAGA GGTGGATCTC
ATCACCCTCG CCTTGCGCGT CAATAAATCC CACAAGGTGG AAGAGAAGGT GGTTCGCACC
TCCAGTGGCG ATTGGTACCA GTTGCGTATT CTGCCGTACC GCATTGCCAC CGATGCCTAC
CTGGGTGTGG TGCTGGTGTT TGTCAACATC AACAGCTTGC ATACCGCCCA GCAAGAGCTG
CTGCGGGTGT CCGAATCCTA TGGTTTGGTT CGCTCTTCGG CACAGATTGG CAGTTGGGAC
TGGAACATCA CTACCGGCGA GTTGGTCTGG TCCGACAATA TTGAGGAGAT GTTTGGGGTT
GAAAAGGATC AGTTTGATGG TAGCTACGAC ACCTTCTTAA AGTCCCTGCA CCCCGAGGAC
CATGGTTTTG TTATGGAAAG CGTCAAAAAC GCCATCGAAA AGGATATGCC CTACGACATT
GACCACCGCA TTATCTGCCC TGATGGTACC ATTCGCTGGA TGGCCGAAAC CGGCACGGTT
ATCCGCAACA GCCGGGGCAA AGCAGAGCGC ATGATCGGCG TGGTGAGAGA TATCACCATG
AGCAAAGATT TAGAGGCCCA GATTCAGGAA AAAGGAGCGC TGCTGCAAAG TATCTTTAAA
ACGGCTCCCA TTGGCATTGG TTTGGTCAAC AAACGGGTTT TCAAGTGGGT TAACCAGCAA
GTGTGCGATA TAACCGGCTA TGTCATGGAT GAACTGGTTG GTCAAGATTC ACGCCTGTTA
TATCCCTCGG ACGAAGAGTA TACCTTTGTC GGTACCGAAA AATATCGGCA AATTCAAGTG
AGTGGTACCG GTACGGTTAA AACCCGCTGG CGTAGAAAAG ATGGGGTGGT CATTGACGTA
TTGATGAGCT CTACCCCCAT TGATCGACAC AATTGGGACA AGGGCGTCAC CTTTACCGTC
CTGGATCTCA CCCACGTGTT GGATACGCCG CAAAGCATGC CCTCTTTGCG AACCCTGATC
AATCACGATA CAGAGTAA
|
|---|
| Protein sequence | MISGSLNGYV STGLTKVFRE GESVTFTNIR FNGQGGRANR LLNIHIKPVI GRKNQSPLAA
LFIQEQAAET RLNPADDAYD FNQETMQRIA DLEQELQLTR ENLQATIEEL ETSNEELQAT
NEELLASNEE LQSTNEELQS VNEELYTVNA EYQNKIIELT EVNNDLDNLM NSTQVVSVFL
DEDLDVRKFT TSSAKLFNIL ESDIGRPLAH LSHNLQEVDL ITLALRVNKS HKVEEKVVRT
SSGDWYQLRI LPYRIATDAY LGVVLVFVNI NSLHTAQQEL LRVSESYGLV RSSAQIGSWD
WNITTGELVW SDNIEEMFGV EKDQFDGSYD TFLKSLHPED HGFVMESVKN AIEKDMPYDI
DHRIICPDGT IRWMAETGTV IRNSRGKAER MIGVVRDITM SKDLEAQIQE KGALLQSIFK
TAPIGIGLVN KRVFKWVNQQ VCDITGYVMD ELVGQDSRLL YPSDEEYTFV GTEKYRQIQV
SGTGTVKTRW RRKDGVVIDV LMSSTPIDRH NWDKGVTFTV LDLTHVLDTP QSMPSLRTLI
NHDTE
|
|---|
| |