More than 300 homologs were found in PanDaTox collection
for query gene PputW619_3202 on replicon NC_010501
Organism: Pseudomonas putida W619



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_010501  PputW619_3202  response regulator receiver protein  100 
 
 		 117 aa  229  1e-59  Pseudomonas putida W619  Bacteria  normal  0.529191  normal  1 
 
 
-
 
NC_010322  PputGB1_3548  response regulator receiver protein  82.05 
 
 		 117 aa  190  6e-48  Pseudomonas putida GB-1  Bacteria  normal  1  normal  0.0400953 
 
 
-
 
NC_002947  PP_3833  response regulator receiver protein  80.34 
 
 		 117 aa  186  9e-47  Pseudomonas putida KT2440  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009512  Pput_1937  response regulator receiver protein  79.49 
 
 		 117 aa  186  1e-46  Pseudomonas putida F1  Bacteria  normal  0.29733  normal  1 
 
 
-
 
NC_010623  Bphy_4784  response regulator receiver protein  48.54 
 
 		 131 aa  90.9  6e-18  Burkholderia phymatum STM815  Bacteria  normal  0.724017  normal  0.683358 
 
 
-
 
NC_013440  Hoch_5999  response regulator receiver protein  37.84 
 
 		 280 aa  80.9  0.000000000000006  Haliangium ochraceum DSM 14365  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009675  Anae109_1134  response regulator receiver protein  37.07 
 
 		 138 aa  79  0.00000000000002  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.461969  hitchhiker  0.00297359 
 
 
-
 
NC_007604  Synpcc7942_1860  two component LuxR family transcriptional regulator  39.66 
 
 		 235 aa  79.3  0.00000000000002  Synechococcus elongatus PCC 7942  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008009  Acid345_0488  response regulator receiver protein  36.13 
 
 		 123 aa  79  0.00000000000002  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010511  M446_5172  response regulator receiver protein  42.31 
 
 		 129 aa  79  0.00000000000002  Methylobacterium sp. 4-46  Bacteria  normal  0.611676  normal  0.0583946 
 
 
-
 
NC_010623  Bphy_4785  response regulator receiver protein  38.79 
 
 		 118 aa  79  0.00000000000002  Burkholderia phymatum STM815  Bacteria  normal  0.526141  normal  0.692787 
 
 
-
 
NC_011145  AnaeK_1155  response regulator receiver protein  38.79 
 
 		 132 aa  77.8  0.00000000000005  Anaeromyxobacter sp. K  Bacteria  normal  0.194588  n/a   
 
 
-
 
NC_007760  Adeh_1095  response regulator receiver domain-containing protein  38.79 
 
 		 138 aa  77.4  0.00000000000005  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.117755  n/a   
 
 
-
 
NC_011891  A2cp1_1223  response regulator receiver protein  38.79 
 
 		 132 aa  77.8  0.00000000000005  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_007952  Bxe_B0483  response regulator receiver domain-containing protein  36.84 
 
 		 116 aa  77.8  0.00000000000005  Burkholderia xenovorans LB400  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013161  Cyan8802_4411  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  39.66 
 
 		 1514 aa  77.4  0.00000000000006  Cyanothece sp. PCC 8802  Bacteria  normal  1  normal  0.0203527 
 
 
-
 
NC_011726  PCC8801_4349  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  39.66 
 
 		 1514 aa  77.4  0.00000000000006  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009712  Mboo_1464  multi-sensor signal transduction histidine kinase  35.34 
 
 		 579 aa  76.6  0.00000000000009  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.164507  normal  1 
 
 
-
 
NC_011831  Cagg_2064  response regulator receiver protein  38.02 
 
 		 128 aa  76.6  0.00000000000009  Chloroflexus aggregans DSM 9485  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007484  Noc_2401  phosphate regulon transcriptional regulatory protein phoB  33.33 
 
 		 229 aa  76.3  0.0000000000001  Nitrosococcus oceani ATCC 19707  Bacteria  normal  1  n/a   
 
 
-
 
NC_007777  Francci3_0321  two component transcriptional regulator  36.21 
 
 		 406 aa  75.5  0.0000000000003  Frankia sp. CcI3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013525  Tter_1435  two component transcriptional regulator, winged helix family  36.28 
 
 		 233 aa  75.1  0.0000000000003  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013385  Adeg_0644  two component transcriptional regulator, winged helix family  39.32 
 
 		 236 aa  74.7  0.0000000000004  Ammonifex degensii KC4  Bacteria  normal  1  n/a   
 
 
-
 
NC_009972  Haur_1488  two component transcriptional regulator  39.32 
 
 		 228 aa  74.3  0.0000000000005  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.00208742  n/a   
 
 
-
 
NC_008576  Mmc1_1834  CheA signal transduction histidine kinases  38.46 
 
 		 878 aa  74.3  0.0000000000006  Magnetococcus sp. MC-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009831  Ssed_0187  response regulator receiver protein  38.33 
 
 		 120 aa  73.9  0.0000000000007  Shewanella sediminis HAW-EB3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007517  Gmet_2924  two component, sigma54 specific, Fis family transcriptional regulator  43.1 
 
 		 470 aa  73.9  0.0000000000007  Geobacter metallireducens GS-15  Bacteria  normal  0.777319  hitchhiker  0.0000000000564278 
 
 
-
 
NC_008700  Sama_3494  response regulator receiver protein  35.83 
 
 		 120 aa  73.6  0.0000000000008  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  0.313433 
 
 
-
 
NC_010424  Daud_1419  two component transcriptional regulator  37.82 
 
 		 231 aa  73.6  0.0000000000008  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.0720218  n/a   
 
 
-
 
NC_013411  GYMC61_1696  two component transcriptional regulator, winged helix family  36.13 
 
 		 224 aa  73.6  0.0000000000008  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008340  Mlg_0669  response regulator receiver protein  39.83 
 
 		 123 aa  73.6  0.0000000000008  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_002939  GSU0598  sigma-54 dependent DNA-binding response regulator  43.1 
 
 		 470 aa  73.6  0.0000000000009  Geobacter sulfurreducens PCA  Bacteria  normal  0.885444  n/a   
 
 
-
 
NC_010676  Bphyt_4016  response regulator receiver protein  35.09 
 
 		 116 aa  73.6  0.0000000000009  Burkholderia phytofirmans PsJN  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013517  Sterm_0289  two component transcriptional regulator, winged helix family  40.83 
 
 		 232 aa  73.2  0.000000000001  Sebaldella termitidis ATCC 33386  Bacteria  hitchhiker  0.0000126796  n/a   
 
 
-
 
NC_007796  Mhun_1415  multi-sensor signal transduction histidine kinase  43.69 
 
 		 2072 aa  73.6  0.000000000001  Methanospirillum hungatei JF-1  Archaea  normal  0.384608  normal  0.53452 
 
 
-
 
NC_009012  Cthe_0287  GAF sensor hybrid histidine kinase  39.09 
 
 		 1160 aa  73.2  0.000000000001  Clostridium thermocellum ATCC 27405  Bacteria  normal  1  n/a   
 
 
-
 
NC_011830  Dhaf_1740  two component transcriptional regulator, winged helix family  34.45 
 
 		 225 aa  72  0.000000000002  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.00000000204942  n/a   
 
 
-
 
NC_011884  Cyan7425_0981  two component transcriptional regulator, LuxR family  38.46 
 
 		 221 aa  72.4  0.000000000002  Cyanothece sp. PCC 7425  Bacteria  normal  1  normal  0.416641 
 
 
-
 
NC_010725  Mpop_5257  two component transcriptional regulator, winged helix family  40.52 
 
 		 234 aa  72.4  0.000000000002  Methylobacterium populi BJ001  Bacteria  normal  0.025536  normal  1 
 
 
-
 
NC_011884  Cyan7425_4627  two component transcriptional regulator, LuxR family  36.21 
 
 		 226 aa  72  0.000000000002  Cyanothece sp. PCC 7425  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009767  Rcas_0960  two component transcriptional regulator  41.18 
 
 		 236 aa  72.4  0.000000000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  1  normal  0.0214647 
 
 
-
 
NC_011830  Dhaf_3739  two component transcriptional regulator, winged helix family  36.13 
 
 		 230 aa  72.4  0.000000000002  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.0000000000466515  n/a   
 
 
-
 
NC_013061  Phep_0505  response regulator receiver  35.59 
 
 		 1334 aa  72.4  0.000000000002  Pedobacter heparinus DSM 2366  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011004  Rpal_0146  response regulator receiver protein  36.13 
 
 		 121 aa  71.6  0.000000000003  Rhodopseudomonas palustris TIE-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009675  Anae109_0824  response regulator receiver protein  34.43 
 
 		 130 aa  71.6  0.000000000003  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.494027  normal  0.693271 
 
 
-
 
NC_009485  BBta_2142  chemotaxis protein cheY  33.62 
 
 		 121 aa  71.6  0.000000000003  Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009943  Dole_1977  response regulator receiver protein  40 
 
 		 265 aa  72  0.000000000003  Desulfococcus oleovorans Hxd3  Bacteria  normal  1  n/a   
 
 
-
 
NC_009523  RoseRS_3485  two component transcriptional regulator  40.34 
 
 		 236 aa  72  0.000000000003  Roseiflexus sp. RS-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009720  Xaut_0202  two component transcriptional regulator  39.66 
 
 		 233 aa  71.2  0.000000000004  Xanthobacter autotrophicus Py2  Bacteria  normal  0.382528  normal  1 
 
 
-
 
NC_007335  PMN2A_1537  two component LuxR family transcriptional regulator  36.21 
 
 		 242 aa  71.2  0.000000000004  Prochlorococcus marinus str. NATL2A  Bacteria  normal  1  n/a   
 
 
-
 
NC_007413  Ava_0301  two component LuxR family transcriptional regulator  33.62 
 
 		 231 aa  71.6  0.000000000004  Anabaena variabilis ATCC 29413  Bacteria  normal  0.54347  normal  1 
 
 
-
 
NC_008819  NATL1_02441  two-component response regulator  36.21 
 
 		 242 aa  71.2  0.000000000004  Prochlorococcus marinus str. NATL1A  Bacteria  normal  0.72299  normal  1 
 
 
-
 
NC_010505  Mrad2831_2339  two component transcriptional regulator  38.79 
 
 		 231 aa  71.2  0.000000000004  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011891  A2cp1_0828  response regulator receiver protein  38.39 
 
 		 122 aa  70.9  0.000000000005  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  hitchhiker  0.0000089442  n/a   
 
 
-
 
NC_009976  P9211_01871  two-component response regulator  37.93 
 
 		 242 aa  71.2  0.000000000005  Prochlorococcus marinus str. MIT 9211  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009972  Haur_1909  response regulator receiver protein  35.71 
 
 		 119 aa  71.2  0.000000000005  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.00400917  n/a   
 
 
-
 
NC_013501  Rmar_1797  two component, sigma54 specific, transcriptional regulator, Fis family  41.88 
 
 		 461 aa  70.5  0.000000000007  Rhodothermus marinus DSM 4252  Bacteria  normal  0.774224  n/a   
 
 
-
 
NC_011146  Gbem_0671  two component, sigma54 specific, transcriptional regulator, Fis family  42.11 
 
 		 469 aa  70.5  0.000000000008  Geobacter bemidjiensis Bem  Bacteria  normal  1  n/a   
 
 
-
 
NC_010184  BcerKBAB4_2313  two component transcriptional regulator  37.07 
 
 		 228 aa  70.1  0.000000000009  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0313786  n/a   
 
 
-
 
NC_010172  Mext_4718  phosphate regulon transcriptional regulatory protein PhoB  39.66 
 
 		 239 aa  70.1  0.000000000009  Methylobacterium extorquens PA1  Bacteria  normal  1  normal  0.220817 
 
 
-
 
NC_010506  Swoo_0167  response regulator receiver protein  36.67 
 
 		 120 aa  70.1  0.00000000001  Shewanella woodyi ATCC 51908  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009456  VC0395_0147  chemotaxis protein CheY  31.93 
 
 		 119 aa  69.7  0.00000000001  Vibrio cholerae O395  Bacteria  normal  1  n/a   
 
 
-
 
NC_007298  Daro_0725  response regulator receiver  35.59 
 
 		 121 aa  69.7  0.00000000001  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  0.537285 
 
 
-
 
NC_013161  Cyan8802_1264  response regulator receiver protein  36.29 
 
 		 122 aa  69.7  0.00000000001  Cyanothece sp. PCC 8802  Bacteria  normal  0.0578681  hitchhiker  0.00155192 
 
 
-
 
NC_009485  BBta_1991  two component transcriptional regulator  36.21 
 
 		 235 aa  70.1  0.00000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011726  PCC8801_1234  response regulator receiver protein  36.29 
 
 		 122 aa  69.7  0.00000000001  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007643  Rru_A0603  two component transcriptional regulator  32.2 
 
 		 233 aa  69.7  0.00000000001  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0519325  n/a   
 
 
-
 
NC_011757  Mchl_5185  two component transcriptional regulator PhoB, winged helix family  39.66 
 
 		 234 aa  70.1  0.00000000001  Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  0.809056 
 
 
-
 
NC_014248  Aazo_2987  LuxR family two component transcriptional regulator  34.48 
 
 		 231 aa  69.7  0.00000000001  'Nostoc azollae' 0708  Bacteria  normal  1  n/a   
 
 
-
 
NC_008261  CPF_1056  DNA-binding response regulator  37.82 
 
 		 226 aa  70.1  0.00000000001  Clostridium perfringens ATCC 13124  Bacteria  normal  0.775205  n/a   
 
 
-
 
NC_008262  CPR_0609  DNA-binding response regulator  35.34 
 
 		 231 aa  69.7  0.00000000001  Clostridium perfringens SM101  Bacteria  hitchhiker  0.0000282114  n/a   
 
 
-
 
NC_010814  Glov_1694  two component, sigma54 specific, transcriptional regulator, Fis family  38.94 
 
 		 472 aa  68.6  0.00000000002  Geobacter lovleyi SZ  Bacteria  normal  1  n/a   
 
 
-
 
NC_009943  Dole_0880  response regulator receiver protein  31.09 
 
 		 123 aa  68.9  0.00000000002  Desulfococcus oleovorans Hxd3  Bacteria  normal  1  n/a   
 
 
-
 
NC_009523  RoseRS_0761  two component transcriptional regulator  39.13 
 
 		 229 aa  68.9  0.00000000002  Roseiflexus sp. RS-1  Bacteria  normal  1  normal  0.179681 
 
 
-
 
NC_013162  Coch_1562  histidine kinase  34.43 
 
 		 1296 aa  68.9  0.00000000002  Capnocytophaga ochracea DSM 7271  Bacteria  normal  0.655639  n/a   
 
 
-
 
NC_009675  Anae109_3956  response regulator receiver protein  36.84 
 
 		 128 aa  69.3  0.00000000002  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  1  normal  0.314568 
 
 
-
 
NC_009767  Rcas_4445  two component transcriptional regulator  39.13 
 
 		 229 aa  68.9  0.00000000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  1  normal  0.14031 
 
 
-
 
NC_009077  Mjls_0339  PAS/PAC sensor hybrid histidine kinase  39.29 
 
 		 1390 aa  69.3  0.00000000002  Mycobacterium sp. JLS  Bacteria  normal  0.726297  normal  0.77171 
 
 
-
 
NC_012918  GM21_0684  two component, sigma54 specific, transcriptional regulator, Fis family  41.23 
 
 		 469 aa  69.3  0.00000000002  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.0000000000150794 
 
 
-
 
NC_012034  Athe_1487  two component transcriptional regulator, winged helix family  41.18 
 
 		 232 aa  68.9  0.00000000002  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.487145  n/a   
 
 
-
 
NC_010725  Mpop_0949  two component transcriptional regulator, winged helix family  37.61 
 
 		 229 aa  68.9  0.00000000002  Methylobacterium populi BJ001  Bacteria  normal  0.0140851  normal  1 
 
 
-
 
NC_011772  BCG9842_B2021  regulatory protein VanR  36.44 
 
 		 228 aa  68.9  0.00000000002  Bacillus cereus G9842  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009523  RoseRS_0338  response regulator receiver modulated metal dependent phosphohydrolase  38.26 
 
 		 513 aa  68.9  0.00000000002  Roseiflexus sp. RS-1  Bacteria  normal  1  normal  0.102838 
 
 
-
 
NC_013124  Afer_0558  two component transcriptional regulator, winged helix family  37.93 
 
 		 237 aa  69.3  0.00000000002  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  1  n/a   
 
 
-
 
NC_011145  AnaeK_0824  response regulator receiver protein  37.5 
 
 		 122 aa  68.9  0.00000000002  Anaeromyxobacter sp. K  Bacteria  normal  0.0263767  n/a   
 
 
-
 
NC_008146  Mmcs_0350  PAS/PAC sensor hybrid histidine kinase  39.29 
 
 		 1390 aa  69.3  0.00000000002  Mycobacterium sp. MCS  Bacteria  normal  0.0937102  n/a   
 
 
-
 
NC_008261  CPF_0623  DNA-binding response regulator  35.34 
 
 		 231 aa  68.9  0.00000000002  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000212568  n/a   
 
 
-
 
NC_008312  Tery_4491  two component LuxR family transcriptional regulator  36.21 
 
 		 233 aa  69.3  0.00000000002  Trichodesmium erythraeum IMS101  Bacteria  normal  1  normal  0.697305 
 
 
-
 
NC_008699  Noca_3695  response regulator receiver  36.21 
 
 		 236 aa  69.3  0.00000000002  Nocardioides sp. JS614  Bacteria  normal  0.795948  n/a   
 
 
-
 
NC_008532  STER_1116  DNA-binding response regulator  38.66 
 
 		 235 aa  68.9  0.00000000002  Streptococcus thermophilus LMD-9  Bacteria  normal  0.310768  n/a   
 
 
-
 
NC_010511  M446_6685  two component transcriptional regulator  40 
 
 		 234 aa  68.9  0.00000000002  Methylobacterium sp. 4-46  Bacteria  normal  0.599421  normal  1 
 
 
-
 
NC_008705  Mkms_0360  PAS/PAC sensor hybrid histidine kinase  39.29 
 
 		 1390 aa  69.3  0.00000000002  Mycobacterium sp. KMS  Bacteria  normal  1  normal  0.592677 
 
 
-
 
NC_002939  GSU2046  response regulator  34.71 
 
 		 404 aa  68.6  0.00000000003  Geobacter sulfurreducens PCA  Bacteria  normal  0.0829987  n/a   
 
 
-
 
NC_009484  Acry_2951  two component transcriptional regulator  33.62 
 
 		 236 aa  68.6  0.00000000003  Acidiphilium cryptum JF-5  Bacteria  normal  1  n/a   
 
 
-
 
NC_013131  Caci_0904  two component transcriptional regulator, winged helix family  38.79 
 
 		 254 aa  68.2  0.00000000003  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.936287  normal  0.32173 
 
 
-
 
NC_011004  Rpal_5261  two component transcriptional regulator, winged helix family  35.34 
 
 		 237 aa  68.6  0.00000000003  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.909356  n/a   
 
 
-
 
NC_009511  Swit_0513  multi-sensor hybrid histidine kinase  36.97 
 
 		 803 aa  68.6  0.00000000003  Sphingomonas wittichii RW1  Bacteria  normal  0.883754  normal  1 
 
 
-
 
NC_011126  HY04AAS1_1268  two component transcriptional regulator, winged helix family  29.41 
 
 		 229 aa  68.6  0.00000000003  Hydrogenobaculum sp. Y04AAS1  Bacteria  normal  1  n/a   
 
 
-
 
NC_008527  LACR_1701  DNA-binding response regulator  36.28 
 
 		 230 aa  68.6  0.00000000003  Lactococcus lactis subsp. cremoris SK11  Bacteria  hitchhiker  0.00672994  n/a   
 
 
-
 
NC_013061  Phep_2657  response regulator receiver  31.67 
 
 		 121 aa  68.6  0.00000000003  Pedobacter heparinus DSM 2366  Bacteria  normal  0.970877  normal  0.494085 
 
 
-
 
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