More than 300 homologs were found in PanDaTox collection
for query gene Francci3_0321 on replicon NC_007777
Organism: Frankia sp. CcI3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007777  Francci3_0321  two component transcriptional regulator  100 
 
 
406 aa  811    Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_6496  two component transcriptional regulator  87.01 
 
 
231 aa  368  1e-100  Frankia sp. EAN1pec  Bacteria  hitchhiker  0.00132974  normal  0.338684 
 
 
-
 
NC_009664  Krad_3036  two component transcriptional regulator, winged helix family  78.35 
 
 
273 aa  362  6e-99  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.106658  normal 
 
 
-
 
NC_008699  Noca_3695  response regulator receiver  80.18 
 
 
236 aa  362  6e-99  Nocardioides sp. JS614  Bacteria  normal  0.795948  n/a   
 
 
-
 
NC_009380  Strop_2130  response regulator receiver  77.29 
 
 
252 aa  361  1e-98  Salinispora tropica CNB-440  Bacteria  normal  0.539517  hitchhiker  0.00279069 
 
 
-
 
NC_009953  Sare_2277  two component transcriptional regulator  76.86 
 
 
248 aa  357  1.9999999999999998e-97  Salinispora arenicola CNS-205  Bacteria  normal  0.113906  normal  0.0109188 
 
 
-
 
NC_013521  Sked_32700  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  68.15 
 
 
271 aa  349  6e-95  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.442824  normal  0.485424 
 
 
-
 
NC_013093  Amir_1724  two component transcriptional regulator, winged helix family  77.19 
 
 
243 aa  344  2e-93  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_5255  two component transcriptional regulator, winged helix family  71.62 
 
 
242 aa  328  1.0000000000000001e-88  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0134474  normal 
 
 
-
 
NC_013235  Namu_4688  two component transcriptional regulator, winged helix family  71.74 
 
 
252 aa  325  1e-87  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_009565  TBFG_13797  two component transcriptional regulatory protein  71.93 
 
 
286 aa  320  1.9999999999999998e-86  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.173423 
 
 
-
 
NC_008726  Mvan_4429  two component transcriptional regulator  70.61 
 
 
250 aa  320  1.9999999999999998e-86  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.133228  normal 
 
 
-
 
NC_011886  Achl_0804  two component transcriptional regulator, winged helix family  62 
 
 
246 aa  318  1e-85  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_008146  Mmcs_3926  two component transcriptional regulator  70.61 
 
 
254 aa  316  4e-85  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_4000  two component transcriptional regulator  70.61 
 
 
254 aa  316  4e-85  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_3941  two component transcriptional regulator  70.61 
 
 
254 aa  316  4e-85  Mycobacterium sp. JLS  Bacteria  normal  normal  0.0990172 
 
 
-
 
NC_008541  Arth_0655  two component transcriptional regulator  61.6 
 
 
246 aa  316  6e-85  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_2266  two component transcriptional regulator  71.49 
 
 
249 aa  315  9.999999999999999e-85  Mycobacterium gilvum PYR-GCK  Bacteria  decreased coverage  0.00896474  normal 
 
 
-
 
NC_008726  Mvan_2296  two component transcriptional regulator  65.79 
 
 
255 aa  291  2e-77  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.398969  normal  0.240289 
 
 
-
 
NC_009565  TBFG_11051  two component system transcriptional regulator trcR  63.44 
 
 
257 aa  289  7e-77  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_6147  two component transcriptional regulator, winged helix family  61.48 
 
 
244 aa  288  9e-77  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.200947 
 
 
-
 
NC_009565  TBFG_10772  two component system response transcriptional positive regulator phoP  59.66 
 
 
247 aa  282  8.000000000000001e-75  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.864575 
 
 
-
 
NC_008146  Mmcs_4590  two component transcriptional regulator  59.57 
 
 
239 aa  281  2e-74  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_4678  two component transcriptional regulator  59.57 
 
 
239 aa  281  2e-74  Mycobacterium sp. KMS  Bacteria  normal  0.337028  normal  0.895878 
 
 
-
 
NC_009077  Mjls_4973  two component transcriptional regulator  59.57 
 
 
239 aa  281  2e-74  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_013124  Afer_0558  two component transcriptional regulator, winged helix family  60.7 
 
 
237 aa  278  1e-73  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_0717  two component transcriptional regulator, winged helix family  61.21 
 
 
242 aa  275  1.0000000000000001e-72  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.00000387016 
 
 
-
 
NC_008726  Mvan_5175  two component transcriptional regulator  59.64 
 
 
236 aa  275  1.0000000000000001e-72  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_3620  two component transcriptional regulator, winged helix family  61.57 
 
 
239 aa  273  4.0000000000000004e-72  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.0253056  normal  0.477246 
 
 
-
 
NC_013739  Cwoe_4508  two component transcriptional regulator, winged helix family  61.5 
 
 
231 aa  273  4.0000000000000004e-72  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_012803  Mlut_22060  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  60.79 
 
 
254 aa  273  5.000000000000001e-72  Micrococcus luteus NCTC 2665  Bacteria  normal  0.0729677  n/a   
 
 
-
 
NC_009338  Mflv_1581  two component transcriptional regulator  58.74 
 
 
238 aa  272  9e-72  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_4064  two component transcriptional regulator  58.7 
 
 
233 aa  271  2e-71  Salinispora arenicola CNS-205  Bacteria  normal  0.98903  normal  0.0666639 
 
 
-
 
NC_013757  Gobs_4657  two component transcriptional regulator, winged helix family  59.64 
 
 
240 aa  270  2e-71  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_012803  Mlut_04130  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  59.15 
 
 
236 aa  269  5.9999999999999995e-71  Micrococcus luteus NCTC 2665  Bacteria  normal  0.118973  n/a   
 
 
-
 
NC_009380  Strop_3686  response regulator receiver  58.7 
 
 
233 aa  268  1e-70  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_013441  Gbro_0822  response regulator receiver  53.81 
 
 
241 aa  268  2e-70  Gordonia bronchialis DSM 43247  Bacteria  normal  0.0530683  n/a   
 
 
-
 
NC_013169  Ksed_21620  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  57.39 
 
 
238 aa  267  2e-70  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.019443  normal  0.0473518 
 
 
-
 
NC_008578  Acel_1449  two component transcriptional regulator  57.89 
 
 
246 aa  265  2e-69  Acidothermus cellulolyticus 11B  Bacteria  normal  0.566781  normal 
 
 
-
 
NC_014158  Tpau_3631  two component transcriptional regulator, winged helix family  59.47 
 
 
235 aa  263  4.999999999999999e-69  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_2937  two component transcriptional regulator, winged helix family  59.31 
 
 
243 aa  262  6.999999999999999e-69  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013174  Jden_2051  two component transcriptional regulator, winged helix family  58.12 
 
 
236 aa  261  2e-68  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_0379  two component transcriptional regulator, winged helix family  59.39 
 
 
233 aa  259  6e-68  Actinosynnema mirum DSM 43827  Bacteria  normal  0.605912  n/a   
 
 
-
 
NC_014151  Cfla_0569  two component transcriptional regulator, winged helix family  62.72 
 
 
248 aa  259  8e-68  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.00419725 
 
 
-
 
NC_013510  Tcur_0578  two component transcriptional regulator, winged helix family  58.74 
 
 
244 aa  258  9e-68  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_4916  response regulator receiver protein  59.65 
 
 
233 aa  256  4e-67  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_8872  response regulator receiver protein  60.99 
 
 
234 aa  255  1.0000000000000001e-66  Streptosporangium roseum DSM 43021  Bacteria  normal  0.347509  normal 
 
 
-
 
NC_007777  Francci3_0234  two component transcriptional regulator  57.96 
 
 
242 aa  254  2.0000000000000002e-66  Frankia sp. CcI3  Bacteria  normal  normal  0.925989 
 
 
-
 
NC_013521  Sked_31480  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  57.39 
 
 
239 aa  254  3e-66  Sanguibacter keddieii DSM 10542  Bacteria  hitchhiker  0.00376265  normal  0.556858 
 
 
-
 
NC_013595  Sros_8879  response regulator receiver protein  57.4 
 
 
235 aa  253  4.0000000000000004e-66  Streptosporangium roseum DSM 43021  Bacteria  normal  0.103439  normal 
 
 
-
 
NC_013172  Bfae_07910  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  56.5 
 
 
239 aa  253  4.0000000000000004e-66  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_0219  two component transcriptional regulator  58.85 
 
 
237 aa  251  1e-65  Salinispora arenicola CNS-205  Bacteria  normal  0.127265  hitchhiker  0.00333518 
 
 
-
 
NC_009921  Franean1_6588  two component transcriptional regulator  57.08 
 
 
229 aa  249  5e-65  Frankia sp. EAN1pec  Bacteria  normal  0.13217  normal 
 
 
-
 
NC_008541  Arth_0784  two component transcriptional regulator  55.04 
 
 
239 aa  249  9e-65  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_3340  two component transcriptional regulator, winged helix family  53.5 
 
 
258 aa  246  6.999999999999999e-64  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal  0.0454745 
 
 
-
 
NC_007777  Francci3_0308  two component transcriptional regulator  53.1 
 
 
239 aa  243  3.9999999999999997e-63  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_0899  two component transcriptional regulator, winged helix family  57.46 
 
 
236 aa  242  9e-63  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.383063 
 
 
-
 
NC_014165  Tbis_3267  winged helix family two component transcriptional regulator  59.38 
 
 
229 aa  241  2e-62  Thermobispora bispora DSM 43833  Bacteria  normal  0.0891778  normal  0.213955 
 
 
-
 
NC_013947  Snas_5144  two component transcriptional regulator, winged helix family  55.41 
 
 
236 aa  241  2e-62  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.204078  normal  0.858106 
 
 
-
 
NC_010816  BLD_0005  response regulator  52.56 
 
 
243 aa  240  4e-62  Bifidobacterium longum DJO10A  Bacteria  normal  0.201532  n/a   
 
 
-
 
NC_014165  Tbis_3276  winged helix family two component transcriptional regulator  56.39 
 
 
234 aa  240  4e-62  Thermobispora bispora DSM 43833  Bacteria  normal  0.208422  normal  0.192837 
 
 
-
 
NC_012669  Bcav_0840  two component transcriptional regulator, winged helix family  55.9 
 
 
241 aa  238  2e-61  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.214337  normal  0.533835 
 
 
-
 
NC_007333  Tfu_0257  response regulator receiver  51.07 
 
 
241 aa  236  5.0000000000000005e-61  Thermobifida fusca YX  Bacteria  normal  0.926332  n/a   
 
 
-
 
NC_009921  Franean1_6507  two component transcriptional regulator  53.78 
 
 
270 aa  236  8e-61  Frankia sp. EAN1pec  Bacteria  normal  0.0763131  normal  0.20607 
 
 
-
 
NC_008726  Mvan_4844  two component transcriptional regulator  52.38 
 
 
231 aa  235  1.0000000000000001e-60  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.312171 
 
 
-
 
NC_008578  Acel_1595  two component transcriptional regulator  55.02 
 
 
227 aa  234  2.0000000000000002e-60  Acidothermus cellulolyticus 11B  Bacteria  normal  0.526383  normal  0.570373 
 
 
-
 
NC_009338  Mflv_1887  two component transcriptional regulator  51.95 
 
 
231 aa  233  5e-60  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.882564  normal  0.344123 
 
 
-
 
NC_009921  Franean1_5311  two component transcriptional regulator  51.88 
 
 
246 aa  232  9e-60  Frankia sp. EAN1pec  Bacteria  normal  0.554395  normal  0.310406 
 
 
-
 
NC_013721  HMPREF0424_0720  response regulator receiver domain protein  49.36 
 
 
246 aa  229  5e-59  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.351492 
 
 
-
 
NC_009767  Rcas_2487  two component transcriptional regulator  54.71 
 
 
224 aa  227  3e-58  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.431556  normal 
 
 
-
 
NC_013235  Namu_4408  two component transcriptional regulator, winged helix family  52.02 
 
 
230 aa  227  3e-58  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_4301  two component transcriptional regulator  51.52 
 
 
230 aa  226  5.0000000000000005e-58  Mycobacterium sp. MCS  Bacteria  normal  0.681825  n/a   
 
 
-
 
NC_008705  Mkms_4387  two component transcriptional regulator  51.52 
 
 
230 aa  226  5.0000000000000005e-58  Mycobacterium sp. KMS  Bacteria  normal  0.0316317  normal 
 
 
-
 
NC_009077  Mjls_4681  two component transcriptional regulator  51.52 
 
 
230 aa  226  5.0000000000000005e-58  Mycobacterium sp. JLS  Bacteria  normal  normal  0.354926 
 
 
-
 
NC_009523  RoseRS_2290  two component transcriptional regulator  54.26 
 
 
224 aa  226  8e-58  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_007644  Moth_1478  two component transcriptional regulator  50.22 
 
 
240 aa  225  1e-57  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.0000111909  normal 
 
 
-
 
NC_014158  Tpau_3286  two component transcriptional regulator, winged helix family  52.4 
 
 
228 aa  225  1e-57  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.167791  n/a   
 
 
-
 
NC_013595  Sros_6397  response regulator receiver protein  53.02 
 
 
237 aa  222  9.999999999999999e-57  Streptosporangium roseum DSM 43021  Bacteria  normal  0.680662  normal  0.0804167 
 
 
-
 
NC_009972  Haur_2799  two component transcriptional regulator  53.12 
 
 
236 aa  221  9.999999999999999e-57  Herpetosiphon aurantiacus ATCC 23779  Bacteria  unclonable  0.000000368356  n/a   
 
 
-
 
NC_009565  TBFG_10999  two component response transcriptional regulatory protein MprA  50.66 
 
 
230 aa  220  3e-56  Mycobacterium tuberculosis F11  Bacteria  hitchhiker  0.00000000188235  normal  0.671639 
 
 
-
 
NC_011831  Cagg_1351  two component transcriptional regulator, winged helix family  51.11 
 
 
225 aa  219  5e-56  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00188361  unclonable  0.0000000206018 
 
 
-
 
NC_009953  Sare_1384  two component transcriptional regulator  49.03 
 
 
252 aa  219  7e-56  Salinispora arenicola CNS-205  Bacteria  decreased coverage  0.00801111  normal  0.0620226 
 
 
-
 
NC_011729  PCC7424_2242  two component transcriptional regulator, winged helix family  47.98 
 
 
224 aa  218  1e-55  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.415885 
 
 
-
 
NC_009380  Strop_1418  response regulator receiver  50 
 
 
251 aa  219  1e-55  Salinispora tropica CNB-440  Bacteria  normal  normal  0.0582944 
 
 
-
 
NC_007413  Ava_0615  two component transcriptional regulator  49.33 
 
 
228 aa  217  2.9999999999999998e-55  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0841359  normal  0.719107 
 
 
-
 
NC_013093  Amir_2632  two component transcriptional regulator, winged helix family  50.22 
 
 
229 aa  216  4e-55  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_1435  two component transcriptional regulator, winged helix family  48.5 
 
 
233 aa  215  9.999999999999999e-55  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_011884  Cyan7425_3411  two component transcriptional regulator, winged helix family  48.21 
 
 
224 aa  214  1.9999999999999998e-54  Cyanothece sp. PCC 7425  Bacteria  normal  0.591115  normal 
 
 
-
 
NC_013131  Caci_7401  two component transcriptional regulator, winged helix family  55.46 
 
 
229 aa  212  9e-54  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.263718  normal 
 
 
-
 
NC_012034  Athe_0280  two component transcriptional regulator, winged helix family  44.89 
 
 
225 aa  212  1e-53  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_1823  two component transcriptional regulator, winged helix family  53.71 
 
 
241 aa  211  2e-53  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.506413  normal 
 
 
-
 
NC_009253  Dred_0759  two component transcriptional regulator  47.09 
 
 
223 aa  209  5e-53  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.00128917  n/a   
 
 
-
 
NC_007498  Pcar_3081  two component signal transduction response regulator  46.67 
 
 
223 aa  208  1e-52  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_3017  two component transcriptional regulator  51.97 
 
 
225 aa  208  1e-52  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_1377  two component transcriptional regulator, winged helix family  48.43 
 
 
225 aa  208  2e-52  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  hitchhiker  0.0000000301655 
 
 
-
 
NC_013525  Tter_1098  two component transcriptional regulator, winged helix family  46.46 
 
 
228 aa  207  2e-52  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_010571  Oter_1727  two component transcriptional regulator  49.78 
 
 
228 aa  207  3e-52  Opitutus terrae PB90-1  Bacteria  normal  0.284746  normal 
 
 
-
 
NC_005945  BAS2056  DNA-binding response regulator  43.3 
 
 
227 aa  206  4e-52  Bacillus anthracis str. Sterne  Bacteria  normal  0.413172  n/a   
 
 
-
 
NC_007530  GBAA_2212  DNA-binding response regulator  43.3 
 
 
227 aa  206  4e-52  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_2240  DNA-binding response regulator  43.3 
 
 
227 aa  206  4e-52  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  2.85177e-28 
 
 
-
 
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