Gene Phep_0505 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_0505 
Symbol 
ID8251592 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp607617 
End bp611621 
Gene Length4005 bp 
Protein Length1334 aa 
Translation table11 
GC content41% 
IMG OID644934155 
Productresponse regulator receiver 
Protein accessionYP_003090791 
Protein GI255530419 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase 
TIGRFAM ID[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTACACCA AACTAACCAA ACTATTCCTT GTATTTTTTT TGCTGTTCAG TGTGGTAAGC 
ATTGGCTACA GCCAGTCGTA CTCCTTCAGG CACTACCAGG TAGAGAATGG TCTATCTTAC
AACTCCGTGA TCTGCAGTTT ACAGGACAAG AAAGGATTTT TGTGGTTTGG CACAAAAGAT
GGCTTAAACA GATTTGATGG CTATACATTT AAAATATTTA GAAATGATCC CGATAATCCG
GAAAGCATCG GGAACAATTT TATCCATAGC CTGTATGAAG ATAAGAACCA GACCATTTGG
ATTGGCACAC TTACCGGGCT CTATAAGTAC GATCCACTTA AAGAAAGTTT TAGCCTGGTT
CCCCCTTCAA AAGGATATGA CATCAGAGAT GTAAGTGCAG ACAGCCGCGG AAATATATGG
TATATAACAG GCTTGTTCCT TTCACGATAT AATGTAAAAA CAAAGCAAAA CATCACATAC
AGGAACAAAT CACATACCGG TACAACCTCT ATCAGCATCA GTGAAAAAGA TGATATCTGG
GTGTCATCAG CTGATGGTTT CATCCAAAGA TACCAGCCGG CCACCGACTC ATTTATTAGT
TATAAGGTAT TTGATAAATC CAAACCGGCC ATCTCCCCGT GGATAGAAAA GGTATATCAT
ACCAATAAAG GATATCTACT GGTTGGGACT TCAAATCAGG GAATAAAAAT ATTTGATATC
CATACGTTGT CCTACCGGGA CCTGTTAACC TCTAATCCCG ACAACACAGC CATCTATGCA
AGAGATTTTA TGGATATAGG AAATGATAGA TACTGGATAG CGACAGAATC AGGATTGTTT
ATTTATGATA TGAAGACAGG TAAATATAAA AACCTGCGCA ATAAATTCAA CGATCCTTAT
TCTATTTCAG ATAATGCAGT CTATACCCTG TGTAAAGACA AAGAAGGCGG GATTTTTGTA
GGAACGTATT TCGGGGGCGT AAACTATTAT GCAAAGGAAT TTACCTCCTT TGATAAATTT
TTCCCACAGG CTTCCGGCAA TAGTCTAAGC GGCTATGCGG TTAAAGAAAT ATGCAATGAT
AAATATGGGA ACCTCTGGAT TGGCACAGAA GATGCCGGCT TAAATAGGCT GAATGCTAAA
ACCGGGGTAT TTGAACATTT TAAACCAGGT GGAGGCAAAA CCACCATTAG CCATACCAAT
ATCCACGGAT TGCTGGCTAC AGATGATGAA CTTTGGGTAG GAACTTTTGA ACGTGGACTG
GACGTCATAG ACATCAATAC CTTAAAAGTA ATCAGGCATT ACCAGGTAGG AAATAAGCCC
AACCAGTTAA AAAGCAATTT TATTGAATCC ATATTAAAAA CCCGTTCAGG AGACATACTG
CTGGGCAGTT CTTATGGACT GTACAGATAT AATAAACATA GCGATGACTT CAGCCTGCTG
AATGAAGTGC CGGGAAATCT GCATTACCAA TATTTAATGG AAGACAATTC CGGCAATATA
TGGGCAGGCT CATTAAGGGA TGGCCTGTAT ATTTATAATA ATGGCGACAG AAGATCCACT
TCCTATAAGT TCGAAGAAAA TAATACCAAA AGCCTGAGCA GCAATGCCAT AAATAGCATT
TTCCAGGACA GCCAAGGTAA CATCTGGGTT GCAACAGAAA ATGGTCTCAA CCGCTTTAAT
GAAAAAGACA AAAGTTTTGC CAGGTATACT ACCAAAAATG GCTTTCCAAG CAATGTTTTC
TATAGGATCC TCGAAGATCA AAAGCAGAAC CTGTGGATCA GTACCTCTCG TGGACTTGTG
TGTTTTAGTC CGGATGAAAA GATAACACTA TATACCAGAT CCAATGGCTT GCTGAACGAT
CAGTTCAACT ATGGTTCGGC GTATAAGAAT AAGAATGGCC GGATGTATTT TGGCAGCGTT
AAAGGAATGA TCAGCTTCCT GCCAGATGAG TTTAGAAAAA ACCAGTTTGT TCCGCCAATT
TACATTACAG GCTTCCAGGT GTACAACAAA GAACTGCAAA TCGGTCAAAA GAATTCTCCC
TTGGCCCAAT CGATCAATTT TACCAGGGTA CTGAACCTTG AACACCACCA ATCCACGTTT
AGTATTGATT TCGCTGCGCT AGGGTACACG GCACCCGAAA TGACAGAATA CACCTATACA
ATGGAAGGTT TGGACCAAAA CTGGACCTAT CTTAAAACAA ACAGGAAAGT ATATTTTACT
AACCTCGCGC CGGGTACGTA TACATTTAAG GTGAAGGCCA CGAACAGCAG TGGCATTTGG
AATCCCTATG TGGCCAGCCT TAAAATTGTC ATCAGCCCTC CTTATTGGGC AAGTCCTATG
GCTTATCTGC TTTACTTCAT CATTGTGGTA ACTGCCATAT ACTACGGCAT AAAATATTAC
CATCAAAGAA CCAGCGATAG AAATAAAAGA AGGATCGAGC GCTGGGAATC TAAAAAGGAA
ACGGAGCTTT ACCAGGCTAA AATCGAATTT TTCACTTATG TTACCCATGA AATTAAAACA
CCCCTAACCC TGATCAAAGG TCCTTTAGAG GAAGTGATGC GCCATGCAGA AGCCTTACCC
CAGGTCAAAG AAAACCTAAC GACCATGGAA AAAAACACCA ATCGTCTGAT AGAACTGACC
GATCAACTCC TGGGCTTCAG AAAAACTGAG ATTGAAGGCT TTAACCTCAG TTTTGTAAAT
GTAAACATCA ACGACATCCT GAAAGAGAAC TGTTCCAGGT TCAAAACAGC TATTGAACAT
AAAAAACTGG AATTAACTGT AGATTTACCA GAGATGCCCC TCTATGCTTA TGCCGATCCA
GAAGCACTAA ACAAGATATT CAGTAACCTG ATCGATAATG CGGTAAAATA TTCCAGAAGC
GAAATTTCGG TAAAGCTGGT CACCTATGAG CACAATTTCG TGATCACCGT AGCCAGTGAC
GGTAAAGTTA TTCCAGAAAA TTTCCGGGAA AAGATCTTCG AACCCTTCTT CAGAATGACC
AGTGCAGGAT CGGAAAGAGG AGCAGGCATT GGCCTGGCCC TGGCCCGATC CCTTACTGAA
TTGCACGAGG GGACTTTGGG GCTAAAAAAT GAGGATAAAA AATACAACAA CTTTGTATTG
ACCCTACCCA TACGCCATGA ACAAGAATTT AAAATCAGTT TAACAGAAAC AAGCCCTATT
GCAAAAAGCA TCTCACAAAA AAAAGATGCG ACAAATTGTC CCGTCATTTT AGTGGTAGAA
GACAATACAG AGATCCGTAC CTTCATTGCA GGTAAACTGG CTAAAGATTT TGAGGTATTA
CAAGCTGGAA ACGGACAGGA GGCGCTGGAT ATCTTAAAAG AAAAAAGCAC TCATCTGATC
ATCAGCGACA TCATGATGCC GGTTTTAGAT GGAATAGCAT TGTGCAGAGC GGTGAAGGAG
AACCTGGAAT ATGCACACAT ACCGATCATC CTGCTCACCG CAAAAAATAC TTTACAGTCT
AAAATAGAAG GCCTGGAGGT TGGTGCAGAT GCCTATCTGG AAAAACCTTT CTCTCCGGAT
CATTTGTTAA CCCAGGTTTC CAATTTATTG GCAGGCAGGG ATAAAATTAA AAACTACTTT
GCAAGTTCTC CGCTGGTTCA CATCAAGAGT ATGGCCTACA ATAAAGCAGA TGAGGCTTTT
CTGGAAACAC TTTATGAGGC CATCCATAAA AACCTGGACA ACAAATCCCT GGATGTAGAT
CAACTGGCAG AAATCATGCA CATGAGCAGA CCAACACTAT ACCGGAAAAT CAAGGCCATT
TCTAACCTTT CACCACACGA GCTCATCAAC ATCACCCGGC TTAAACGGGC AGCCGAACTG
CTGGCTGAAG GAAACCATAA GATCCTGAAA ATCGCTTCCA TGACGGGTTT CAGTTCTCAG
ACCCAATTTG GGAGATCTTT TCTTAAACAG TTTGGTATGA CACCTTCTGA ATATGCTGCT
TCGAAGCAGT TGACTATAGC TGGTCAATCT TGCAGTCCTA ACTGA
 
Protein sequence
MYTKLTKLFL VFFLLFSVVS IGYSQSYSFR HYQVENGLSY NSVICSLQDK KGFLWFGTKD 
GLNRFDGYTF KIFRNDPDNP ESIGNNFIHS LYEDKNQTIW IGTLTGLYKY DPLKESFSLV
PPSKGYDIRD VSADSRGNIW YITGLFLSRY NVKTKQNITY RNKSHTGTTS ISISEKDDIW
VSSADGFIQR YQPATDSFIS YKVFDKSKPA ISPWIEKVYH TNKGYLLVGT SNQGIKIFDI
HTLSYRDLLT SNPDNTAIYA RDFMDIGNDR YWIATESGLF IYDMKTGKYK NLRNKFNDPY
SISDNAVYTL CKDKEGGIFV GTYFGGVNYY AKEFTSFDKF FPQASGNSLS GYAVKEICND
KYGNLWIGTE DAGLNRLNAK TGVFEHFKPG GGKTTISHTN IHGLLATDDE LWVGTFERGL
DVIDINTLKV IRHYQVGNKP NQLKSNFIES ILKTRSGDIL LGSSYGLYRY NKHSDDFSLL
NEVPGNLHYQ YLMEDNSGNI WAGSLRDGLY IYNNGDRRST SYKFEENNTK SLSSNAINSI
FQDSQGNIWV ATENGLNRFN EKDKSFARYT TKNGFPSNVF YRILEDQKQN LWISTSRGLV
CFSPDEKITL YTRSNGLLND QFNYGSAYKN KNGRMYFGSV KGMISFLPDE FRKNQFVPPI
YITGFQVYNK ELQIGQKNSP LAQSINFTRV LNLEHHQSTF SIDFAALGYT APEMTEYTYT
MEGLDQNWTY LKTNRKVYFT NLAPGTYTFK VKATNSSGIW NPYVASLKIV ISPPYWASPM
AYLLYFIIVV TAIYYGIKYY HQRTSDRNKR RIERWESKKE TELYQAKIEF FTYVTHEIKT
PLTLIKGPLE EVMRHAEALP QVKENLTTME KNTNRLIELT DQLLGFRKTE IEGFNLSFVN
VNINDILKEN CSRFKTAIEH KKLELTVDLP EMPLYAYADP EALNKIFSNL IDNAVKYSRS
EISVKLVTYE HNFVITVASD GKVIPENFRE KIFEPFFRMT SAGSERGAGI GLALARSLTE
LHEGTLGLKN EDKKYNNFVL TLPIRHEQEF KISLTETSPI AKSISQKKDA TNCPVILVVE
DNTEIRTFIA GKLAKDFEVL QAGNGQEALD ILKEKSTHLI ISDIMMPVLD GIALCRAVKE
NLEYAHIPII LLTAKNTLQS KIEGLEVGAD AYLEKPFSPD HLLTQVSNLL AGRDKIKNYF
ASSPLVHIKS MAYNKADEAF LETLYEAIHK NLDNKSLDVD QLAEIMHMSR PTLYRKIKAI
SNLSPHELIN ITRLKRAAEL LAEGNHKILK IASMTGFSSQ TQFGRSFLKQ FGMTPSEYAA
SKQLTIAGQS CSPN