More than 300 homologs were found in PanDaTox collection
for query gene BBta_1991 on replicon NC_009485
Organism: Bradyrhizobium sp. BTAi1



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009485  BBta_1991  two component transcriptional regulator  100 
 
 
235 aa  461  1e-129  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_4918  two component transcriptional regulator  94.02 
 
 
234 aa  439  9.999999999999999e-123  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.134814 
 
 
-
 
NC_011004  Rpal_5261  two component transcriptional regulator, winged helix family  93.99 
 
 
237 aa  436  1e-121  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.909356  n/a   
 
 
-
 
NC_007778  RPB_0781  two component transcriptional regulator  92.7 
 
 
233 aa  430  1e-120  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.174075 
 
 
-
 
NC_007958  RPD_0893  winged helix family two component transcriptional regulator  92.7 
 
 
233 aa  432  1e-120  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_0640  two component transcriptional regulator  92.27 
 
 
233 aa  427  1e-119  Nitrobacter hamburgensis X14  Bacteria  normal  0.772339  n/a   
 
 
-
 
NC_007406  Nwi_0511  phosphate regulon transcriptional regulatory protein phoB  90.04 
 
 
234 aa  411  1e-114  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal  0.473137 
 
 
-
 
NC_009720  Xaut_0202  two component transcriptional regulator  77.25 
 
 
233 aa  371  1e-102  Xanthobacter autotrophicus Py2  Bacteria  normal  0.382528  normal 
 
 
-
 
NC_011894  Mnod_7423  two component transcriptional regulator PhoB, winged helix family  72.84 
 
 
234 aa  343  2e-93  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_0485  phosphate regulon transcriptional regulatory protein PhoB  74.34 
 
 
227 aa  343  2e-93  Agrobacterium vitis S4  Bacteria  normal  0.537934  n/a   
 
 
-
 
NC_011369  Rleg2_0173  two component transcriptional regulator PhoB, winged helix family  73.89 
 
 
227 aa  342  2.9999999999999997e-93  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.505642  normal  0.985195 
 
 
-
 
NC_012850  Rleg_0183  two component transcriptional regulator PhoB, winged helix family  73.89 
 
 
227 aa  341  4e-93  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.635675 
 
 
-
 
NC_010511  M446_6685  two component transcriptional regulator  72.41 
 
 
234 aa  341  7e-93  Methylobacterium sp. 4-46  Bacteria  normal  0.599421  normal 
 
 
-
 
NC_009636  Smed_0124  two component transcriptional regulator  73.89 
 
 
227 aa  338  4e-92  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.352403 
 
 
-
 
NC_011757  Mchl_5185  two component transcriptional regulator PhoB, winged helix family  69.83 
 
 
234 aa  338  4e-92  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.809056 
 
 
-
 
NC_010172  Mext_4718  phosphate regulon transcriptional regulatory protein PhoB  69.83 
 
 
239 aa  338  4e-92  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.220817 
 
 
-
 
NC_010725  Mpop_5257  two component transcriptional regulator, winged helix family  70.26 
 
 
234 aa  336  9.999999999999999e-92  Methylobacterium populi BJ001  Bacteria  normal  0.025536  normal 
 
 
-
 
NC_008254  Meso_3116  two component transcriptional regulator  71.56 
 
 
229 aa  332  4e-90  Chelativorans sp. BNC1  Bacteria  normal  0.202822  n/a   
 
 
-
 
NC_010505  Mrad2831_2339  two component transcriptional regulator  70.48 
 
 
231 aa  327  9e-89  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_004310  BR2143  phosphate regulon transcriptional regulatory protein Phob  71.62 
 
 
228 aa  327  1.0000000000000001e-88  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009505  BOV_2058  phosphate regulon transcriptional regulatory protein PhoB  71.62 
 
 
228 aa  325  4.0000000000000003e-88  Brucella ovis ATCC 25840  Bacteria  normal  0.275433  n/a   
 
 
-
 
NC_009667  Oant_0766  two component transcriptional regulator  70.72 
 
 
228 aa  323  1e-87  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.0291358  n/a   
 
 
-
 
NC_010581  Bind_3413  two component transcriptional regulator  68.26 
 
 
252 aa  323  1e-87  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.427436 
 
 
-
 
NC_011666  Msil_0834  two component transcriptional regulator PhoB, winged helix family  68.97 
 
 
265 aa  323  2e-87  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0108417 
 
 
-
 
NC_009719  Plav_0399  two component transcriptional regulator  62.45 
 
 
272 aa  305  3e-82  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.802217  normal 
 
 
-
 
NC_010338  Caul_4546  two component transcriptional regulator  64.6 
 
 
230 aa  296  1e-79  Caulobacter sp. K31  Bacteria  normal  normal  0.281853 
 
 
-
 
NC_008347  Mmar10_0483  two component transcriptional regulator  63.27 
 
 
229 aa  297  1e-79  Maricaulis maris MCS10  Bacteria  normal  0.342081  normal 
 
 
-
 
NC_007643  Rru_A0603  two component transcriptional regulator  63.72 
 
 
233 aa  290  9e-78  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0519325  n/a   
 
 
-
 
NC_009428  Rsph17025_1924  two component transcriptional regulator  61.54 
 
 
230 aa  276  2e-73  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.781724  normal  0.399122 
 
 
-
 
NC_009952  Dshi_1538  phosphate regulon transcriptional regulatory protein  62.44 
 
 
228 aa  275  4e-73  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.280381 
 
 
-
 
NC_009049  Rsph17029_1257  two component transcriptional regulator  61.09 
 
 
230 aa  274  1.0000000000000001e-72  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.621627  normal 
 
 
-
 
NC_007493  RSP_2599  phosphate regulon transcriptional regulator, PhoR  61.09 
 
 
230 aa  274  1.0000000000000001e-72  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_2294  two component transcriptional regulator  60.63 
 
 
228 aa  270  1e-71  Jannaschia sp. CCS1  Bacteria  normal  0.305192  normal 
 
 
-
 
NC_008044  TM1040_1257  two component transcriptional regulator  60.63 
 
 
229 aa  270  2e-71  Ruegeria sp. TM1040  Bacteria  normal  0.536699  normal 
 
 
-
 
NC_009484  Acry_2951  two component transcriptional regulator  59.91 
 
 
236 aa  268  7e-71  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_3577  two component transcriptional regulator  62.5 
 
 
232 aa  266  2e-70  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.70324 
 
 
-
 
NC_008687  Pden_4325  two component transcriptional regulator  59.28 
 
 
229 aa  261  4.999999999999999e-69  Paracoccus denitrificans PD1222  Bacteria  normal  0.974523  normal 
 
 
-
 
NC_008048  Sala_0821  two component transcriptional regulator  57.21 
 
 
232 aa  254  1.0000000000000001e-66  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.60557  hitchhiker  0.00503775 
 
 
-
 
NC_011365  Gdia_2688  two component transcriptional regulator PhoB, winged helix family  58.3 
 
 
243 aa  253  2.0000000000000002e-66  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.0901925  normal  0.494683 
 
 
-
 
NC_007484  Noc_2401  phosphate regulon transcriptional regulatory protein phoB  52.19 
 
 
229 aa  245  4.9999999999999997e-64  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_007794  Saro_2281  two component transcriptional regulator  55.61 
 
 
229 aa  243  9.999999999999999e-64  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.331932  n/a   
 
 
-
 
NC_008700  Sama_1074  response regulator receiver protein  52.63 
 
 
229 aa  244  9.999999999999999e-64  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.0000246777  normal  0.491091 
 
 
-
 
NC_008345  Sfri_2768  two component transcriptional regulator, winged helix family protein  52.4 
 
 
229 aa  243  1.9999999999999999e-63  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.0176064  n/a   
 
 
-
 
NC_008825  Mpe_A1277  two component transcriptional regulator  51.74 
 
 
233 aa  242  3.9999999999999997e-63  Methylibium petroleiphilum PM1  Bacteria  normal  0.0649233  normal  0.253886 
 
 
-
 
NC_009052  Sbal_1378  two component transcriptional regulator  52.63 
 
 
229 aa  240  1e-62  Shewanella baltica OS155  Bacteria  hitchhiker  0.00000291119  n/a   
 
 
-
 
NC_004347  SO_1558  phosphate regulon response regulator PhoB  52.63 
 
 
239 aa  240  1e-62  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009997  Sbal195_1403  two component transcriptional regulator  52.63 
 
 
229 aa  240  1e-62  Shewanella baltica OS195  Bacteria  hitchhiker  0.00109837  normal  0.0219543 
 
 
-
 
NC_009665  Shew185_1364  two component transcriptional regulator  52.63 
 
 
229 aa  240  1e-62  Shewanella baltica OS185  Bacteria  hitchhiker  0.0000657343  n/a   
 
 
-
 
NC_011663  Sbal223_2981  two component transcriptional regulator PhoB, winged helix family  52.63 
 
 
229 aa  240  1e-62  Shewanella baltica OS223  Bacteria  hitchhiker  0.000000220801  hitchhiker  0.00121997 
 
 
-
 
NC_008321  Shewmr4_2709  two component transcriptional regulator  52.63 
 
 
229 aa  240  1e-62  Shewanella sp. MR-4  Bacteria  hitchhiker  0.00000407229  decreased coverage  0.000000263688 
 
 
-
 
NC_008322  Shewmr7_2777  two component transcriptional regulator  52.63 
 
 
229 aa  240  1e-62  Shewanella sp. MR-7  Bacteria  unclonable  0.000000628627  decreased coverage  0.000208697 
 
 
-
 
NC_008577  Shewana3_2879  two component transcriptional regulator  52.63 
 
 
229 aa  240  1e-62  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.000000143261  hitchhiker  0.00000615281 
 
 
-
 
NC_009438  Sputcn32_1296  two component transcriptional regulator  52.63 
 
 
229 aa  239  2e-62  Shewanella putrefaciens CN-32  Bacteria  unclonable  0.000000000460678  n/a   
 
 
-
 
NC_009831  Ssed_3303  two component transcriptional regulator  52.84 
 
 
229 aa  239  2e-62  Shewanella sediminis HAW-EB3  Bacteria  unclonable  0.0000000702519  hitchhiker  0.00000106408 
 
 
-
 
NC_007954  Sden_2689  phosphate regulon transcriptional regulatory protein phoB  51.97 
 
 
229 aa  239  2.9999999999999997e-62  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.00000627834  n/a   
 
 
-
 
NC_009092  Shew_2749  two component transcriptional regulator  51.97 
 
 
241 aa  238  4e-62  Shewanella loihica PV-4  Bacteria  decreased coverage  0.00000593879  unclonable  0.00000330773 
 
 
-
 
NC_010506  Swoo_3452  two component transcriptional regulator  52.4 
 
 
229 aa  238  6.999999999999999e-62  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00686704  hitchhiker  0.000158375 
 
 
-
 
NC_007404  Tbd_0216  two component transcriptional regulator  52.02 
 
 
230 aa  236  3e-61  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.305183 
 
 
-
 
CP001509  ECD_00347  DNA-binding response regulator in two-component regulatory system with PhoR (or CreC)  50.22 
 
 
229 aa  234  6e-61  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_3210  two component transcriptional regulator PhoB, winged helix family  50.22 
 
 
229 aa  234  6e-61  Escherichia coli DH1  Bacteria  normal  0.146413  n/a   
 
 
-
 
NC_012892  B21_00351  hypothetical protein  50.22 
 
 
229 aa  234  6e-61  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E0318  transcriptional regulator PhoB  50.22 
 
 
229 aa  234  6e-61  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_0475  transcriptional regulator PhoB  50.22 
 
 
229 aa  234  6e-61  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_009800  EcHS_A0467  transcriptional regulator PhoB  50.22 
 
 
229 aa  234  6e-61  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_0429  transcriptional regulator PhoB  50.22 
 
 
229 aa  234  6e-61  Escherichia coli SMS-3-5  Bacteria  normal  0.283039  normal 
 
 
-
 
NC_010468  EcolC_3234  transcriptional regulator PhoB  50.22 
 
 
229 aa  234  6e-61  Escherichia coli ATCC 8739  Bacteria  normal  0.456974  unclonable  0.00000000819474 
 
 
-
 
NC_009801  EcE24377A_0427  transcriptional regulator PhoB  50.22 
 
 
229 aa  234  6e-61  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_0824  two component transcriptional regulator, winged helix family  50.86 
 
 
229 aa  234  7e-61  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_009457  VC0395_A0253  DNA-binding response regulator PhoB  50.67 
 
 
229 aa  233  3e-60  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_1041  two component transcriptional regulator  49.78 
 
 
229 aa  232  4.0000000000000004e-60  Serratia proteamaculans 568  Bacteria  normal  normal  0.194422 
 
 
-
 
NC_011149  SeAg_B0435  transcriptional regulator PhoB  49.78 
 
 
229 aa  232  4.0000000000000004e-60  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_004385  phosphate regulon transcriptional regulatory protein PhoB  50.67 
 
 
229 aa  231  6e-60  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_0098  two component transcriptional regulator  50.88 
 
 
229 aa  231  8.000000000000001e-60  Halorhodospira halophila SL1  Bacteria  normal  0.761303  n/a   
 
 
-
 
NC_009901  Spea_2969  two component transcriptional regulator  51.53 
 
 
229 aa  230  1e-59  Shewanella pealeana ATCC 700345  Bacteria  decreased coverage  0.000000855765  n/a   
 
 
-
 
NC_011080  SNSL254_A0441  transcriptional regulator PhoB  49.34 
 
 
229 aa  230  1e-59  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.244741  normal 
 
 
-
 
NC_011083  SeHA_C0496  transcriptional regulator PhoB  49.34 
 
 
229 aa  230  2e-59  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_0867  transcriptional regulator PhoB  48.91 
 
 
229 aa  229  2e-59  Enterobacter sp. 638  Bacteria  normal  0.437737  normal 
 
 
-
 
NC_011094  SeSA_A0454  transcriptional regulator PhoB  49.34 
 
 
229 aa  230  2e-59  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A0435  transcriptional regulator PhoB  49.34 
 
 
229 aa  230  2e-59  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.464381  normal 
 
 
-
 
NC_009783  VIBHAR_01026  response regulator  50.22 
 
 
229 aa  229  2e-59  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013422  Hneap_2266  two component transcriptional regulator PhoB, winged helix family  52.23 
 
 
230 aa  229  3e-59  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_3276  two component transcriptional regulator  49.34 
 
 
229 aa  228  4e-59  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_3136  phosphate regulon transcriptional regulatory protein PhoB  49.34 
 
 
229 aa  228  4e-59  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A3286  phosphate regulon transcriptional regulatory protein  49.34 
 
 
230 aa  229  4e-59  Yersinia pestis Angola  Bacteria  normal  normal  0.0413143 
 
 
-
 
NC_008228  Patl_1053  two component transcriptional regulator  48.43 
 
 
229 aa  228  5e-59  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_002977  MCA3105  DNA-binding response regulator PhoB  50.67 
 
 
232 aa  227  1e-58  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_1208  phosphate regulon response regulator PhoB  45.89 
 
 
233 aa  227  1e-58  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_0227  two component transcriptional regulator PhoB, winged helix family  49.36 
 
 
236 aa  227  1e-58  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_010551  BamMC406_1194  two component transcriptional regulator  51.09 
 
 
233 aa  226  2e-58  Burkholderia ambifaria MC40-6  Bacteria  normal  0.159741  normal  0.484581 
 
 
-
 
NC_010508  Bcenmc03_1276  two component transcriptional regulator  51.09 
 
 
233 aa  226  2e-58  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_3302  two component transcriptional regulator PhoB, winged helix family  48.47 
 
 
229 aa  227  2e-58  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_007520  Tcr_0541  two component transcriptional regulator  51.36 
 
 
230 aa  226  2e-58  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_3106  two component transcriptional regulator PhoB, winged helix family  48.91 
 
 
229 aa  226  2e-58  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I2457  response regulator homolog PhoB (phosphate regulon transcriptional regulatory protein)  50.67 
 
 
230 aa  226  2e-58  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_0887  two component transcriptional regulator  49.58 
 
 
233 aa  226  2e-58  Burkholderia phymatum STM815  Bacteria  normal  0.686184  normal  0.0397846 
 
 
-
 
NC_008060  Bcen_0824  two component transcriptional regulator  51.09 
 
 
233 aa  226  2e-58  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_009379  Pnuc_1597  two component transcriptional regulator  50 
 
 
237 aa  226  2e-58  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_008390  Bamb_1182  two component transcriptional regulator  51.09 
 
 
233 aa  226  2e-58  Burkholderia ambifaria AMMD  Bacteria  normal  0.547738  n/a   
 
 
-
 
NC_008542  Bcen2424_1305  two component transcriptional regulator  51.09 
 
 
233 aa  226  2e-58  Burkholderia cenocepacia HI2424  Bacteria  normal  0.920206  n/a   
 
 
-
 
NC_012917  PC1_1008  two component transcriptional regulator PhoB, winged helix family  48.47 
 
 
229 aa  227  2e-58  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>