Gene Cthe_0287 details

Gene Information

• Locus tag: Cthe_0287
• ID: 4808505
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium thermocellum ATCC 27405
• Kingdom: Bacteria
• Replicon accession: NC_009012
• Strand: +
• Start bp: 355145
• End bp: 358627
• Gene Length: 3483 bp
• Protein Length: 1160 aa
• Translation table: 11
• GC content: 40%
• IMG OID: 640105699
• Product: GAF sensor hybrid histidine kinase
• Protein accession: YP_001036719
• Protein GI: 125972809
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG0642] Signal transduction histidine kinase

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAACTGC TGAAAAATGT AAGAATTCAA CACAGAATGT GGGCATTGTT TGCCGTTTGG 
CTTATATTGT ATGTCATTTT TGCCGTAGCT GCTTACAGAA ATGTAAGTGA GATTGGGCAA 
GTATCCGAAG ACATTTATAC CCAGTCGCTG AAGACGTCAA ATGCCGCCAG AGAGGCAAGG 
GTGGCAATAA TGAAAATACA AAGAGGAATA AAGGAGATTT TGCTGTCTGA CAATCCTGAT 
AATGTCTATT ACGAATTGGA AAAAATCAGG GAATTGGATA ATCAGGTTTT GGAAAACTTT 
GAAATAATAA AATCCAATTC CGGCGGTAAT GAAGAAATAG AGAAGCTTGT AAATGAATCA 
ACAGAAATAT TTGACGAATG GAGAAAAACC CGGGGGGAAA TTGCGGCTCT GATACAGCAA 
AACAAACATT TACAAGATAC AACTGCTCTT ACAGTAAAAA ATAATGAGTT TGTTGAAAAA 
TTGGAGAAAT GCCTGGACAG TCTGGATAAA ATTGAAGAGG ATGAAGCGCA AAATCTTATA 
GACCGATCCG CCAAAATACA GAAATACCAT AAAAACAGTA TATTCTATTG GACCGGGATA 
ATAGTGTTTA CTTCGGTTGT TCTGTTTACC ATTGTGATAC GGAGCATAAT GTGGCCCGTT 
TCATATTTGC AGCATATAAT GCGAACCAGC GCAAATACCA GAGAGATTAT TGAAGCTGAA 
CTTCCCGGGA AAAATGAATT GGTTAACATG GCCAATTACT ACAACAAGCT TGTAAGAAAT 
CTAAAGGAGC AGTTCTGGAT AAAAGACAAT TGCAGTGCTC TAAATGAGGA ACTTGCCGGC 
AAATTTGATC TTAAGGAAAT TACGGATAAA GCGGTAACTT TTTTGGCAAG GATTTTGGAT 
GCAGGAAACG GTGTGCTTTA TCTTTATAAT GATGAGGATA AAAAGCTGTA TTTGAATTCA 
TCCTATGCCT TTACCGAAAG GGACCGTCTG TCAAACCAAT ATGAACTGGG AGAAGGGATA 
ATAGGTCAGG TGGCCCTTGA AAGAAAGCCG ATTCTTTTAA AAAATGTCAA AAGGCAGGAA 
GCACTGATTA CCACGGGCAC CGTAACTGAA GCACCTCTTA ATGTTTATGC CGTGCCGCTC 
TTATATCAAG GTCATCTTTA TGGCGTCTTG GAACTGTCAT CTTTTGAACC TTTTGTGGAA 
TTAAAACAGG AATTGATGAA CGAGGCTGCC AAGATTGTAT CCACGTATTT ATATACCGCC 
GTACAAAATA ACAGGATTGT AAACCTCTTG AAAATTACAG AGGCTGCAAA ACAAGAGGCG 
GGCAGGAAAG CAAGCGAGCT GGAAGAGGCC AACAGGGTGC TGGAAGAGCA GCAAATTCTT 
CTGCAAAAAC AGACTGAAGA GCTTCAGCAA ACCAATATCC AGCTTGAATA TCAGCAGCAG 
AAACTTCAGC AGCAGAGTGA GGAATTGCAG CAGACCAATT CCCAGCTTGA GGAACAACAA 
CAGCTTCTTG AAGAACAGGC AAGGCTTTTG AATATTAAAA ATGAAGATCT TGAAAGAACA 
ACCCGGGAGC TTAGATTAAG AACTGAAGAA TTGGAAAAGG TCAATAAATA CAGATCAGAG 
TTTCTGGCCA ATATGTCCCA TGAGCTCAGG ACTCCGCTCA ATTCAATTAT TCTCCTTTCC 
AAAATGCTTG CACGAAAGAA AATAAATGAG TTTGATGAAA AAGATATGGA GAAGATTGAG 
GTAATCAATA AAGCCGGTCA GGAACTTTTG CGTTTAATTA ATGATGTTTT GGATCTTTCC 
AAAGTTGAAT CGGGCAAAAT GAATTTGAAT ATTTTCACTT TCCATTCCAG TGAACTGATG 
GAGGACTTAA GGCAGATGTT TGAAAGCTCT GCAAAAGAGA AAAATATATC CTTTTTTGTG 
GAGGATTCAA TAAACTCCAT GTTGGTCGGA GACAGGGATA AAATTTCCCA GATACTGAGA 
AATTTCCTTT CCAATGCGTT TAAATTCACT TCAGAGGGTT CTGTAATTTT AAAGGCGGAA 
ATGGACAAGG ACAGAGAAAA CGATCTCATA TTCTCGGTAA CCGACACCGG AATCGGTATT 
CCTGAAGAAC ACATTTCTGA TATATTCCAG GAGTTTCGGC AGGTGGACGG AACAATATCA 
AGAAAGTATG GGGGGACCGG ACTTGGTTTG TCCATATCAA AGAAACTTGC CGACCTTATG 
AAAGGAGAAA TAGAAGTCCG AAGCAAAATT GGAGAGGGAA GTACGTTTTT CCTCAAACTG 
CCCGGTCTTG TTTGCAAAAA AGAGGATGGC AGGGAAAAGG TGACGGTAAA GAAAGACATG 
GACAGGAAAA TCTCAACGGA TCGAAAAAAT GACAAGGTAA TACTGGTTAT TGAAGACAAT 
GAGAATTTTG CAAAGTACCT GAAAGAAATA AATGACGGCA TGGGATTTGA CACCATTATC 
GCAGGCAGCG GAAAGGAAGG CCTGGAGACA GCCAAAAACA CCAGGGTGGA CGGAATTTTG 
CTGGACATTA TGCTTCCTGA TATGAGTGGA ATTGAAGTGC TAAGAGAGCT AAAAAGCATT 
GTGGAGCTTG GAAAAATTCC GGTACATGTA ATTTCCGACC TTGAAGAAGA TGACGTTTCG 
CAAATTATTG CGTATTTGTT GAATTATTCC GCACGGCACC CCGAACGGAT TATGATTGTC 
GGAGGGGATG CAATCTGGCA GAGTACCATC AAAAAGCCGT TTGAAGAAAG AAATATAACA 
ACAAAAACGG TATCGACTGA GGAAGAGGTA AAGTTCGAAT TTAAAAAGGA AATGTATGAT 
GCTGTGATTT TGAATATGGA ATTGGATGAC AAAGATGTTG CAGGCATTTG CGAATATATA 
GCTGAGCAAA ATGTGGACAT TCCTCTGATT GTTTACGCCG AAAAAAGTCT TTCACAAGAA 
CGGCAGAAGG AAATAAAAAA ATATGCAGAT AAAATAATTA TTAAGACAGC GGATTCAAAA 
GAAAGGTTTC AGGATGAACT GACTGCTTTC CTTAAAGGAA TTAAAGAAAA CATGGACAAT 
GGCTGCTATT TGTTTTCGAA AGTAAAAAAA GAATATGCGT TGAATTTGGA CGGAAAAACC 
ATTATGATTG TCGATGATGA CCACAGAAAT GTTTTTGTCC TGGCAGCGGC TCTTGAAGAT 
TACGGAGCCA ACATCATAGC TGCGGAAAAC GGTAAAATGG CTCTTGAATT GCTTAGGACC 
AATAAAGTAG ACTTAATATT GATGGATATT ATGATGCCGG TGATGGACGG ATATGAGACT 
ATCAGAGCGA TAAAGGGAGA TAAAGAGCTA AAAGGTATTC CGGTTATCGC AGTTACGGCA 
AAGTCTCTAA AATCCGACAA GGAAAAGTGC ATCGAAGCCG GAGCGGATGA CTATATTTCA 
AAACCTGTGG ATTACGATGT CCTGATACGG CTTATAAAAG CCTGGACAGC CAAAGAAAAC 
TAA 

 

Protein sequence

MKLLKNVRIQ HRMWALFAVW LILYVIFAVA AYRNVSEIGQ VSEDIYTQSL KTSNAAREAR 
VAIMKIQRGI KEILLSDNPD NVYYELEKIR ELDNQVLENF EIIKSNSGGN EEIEKLVNES 
TEIFDEWRKT RGEIAALIQQ NKHLQDTTAL TVKNNEFVEK LEKCLDSLDK IEEDEAQNLI 
DRSAKIQKYH KNSIFYWTGI IVFTSVVLFT IVIRSIMWPV SYLQHIMRTS ANTREIIEAE 
LPGKNELVNM ANYYNKLVRN LKEQFWIKDN CSALNEELAG KFDLKEITDK AVTFLARILD 
AGNGVLYLYN DEDKKLYLNS SYAFTERDRL SNQYELGEGI IGQVALERKP ILLKNVKRQE 
ALITTGTVTE APLNVYAVPL LYQGHLYGVL ELSSFEPFVE LKQELMNEAA KIVSTYLYTA 
VQNNRIVNLL KITEAAKQEA GRKASELEEA NRVLEEQQIL LQKQTEELQQ TNIQLEYQQQ 
KLQQQSEELQ QTNSQLEEQQ QLLEEQARLL NIKNEDLERT TRELRLRTEE LEKVNKYRSE 
FLANMSHELR TPLNSIILLS KMLARKKINE FDEKDMEKIE VINKAGQELL RLINDVLDLS 
KVESGKMNLN IFTFHSSELM EDLRQMFESS AKEKNISFFV EDSINSMLVG DRDKISQILR 
NFLSNAFKFT SEGSVILKAE MDKDRENDLI FSVTDTGIGI PEEHISDIFQ EFRQVDGTIS 
RKYGGTGLGL SISKKLADLM KGEIEVRSKI GEGSTFFLKL PGLVCKKEDG REKVTVKKDM 
DRKISTDRKN DKVILVIEDN ENFAKYLKEI NDGMGFDTII AGSGKEGLET AKNTRVDGIL 
LDIMLPDMSG IEVLRELKSI VELGKIPVHV ISDLEEDDVS QIIAYLLNYS ARHPERIMIV 
GGDAIWQSTI KKPFEERNIT TKTVSTEEEV KFEFKKEMYD AVILNMELDD KDVAGICEYI 
AEQNVDIPLI VYAEKSLSQE RQKEIKKYAD KIIIKTADSK ERFQDELTAF LKGIKENMDN 
GCYLFSKVKK EYALNLDGKT IMIVDDDHRN VFVLAAALED YGANIIAAEN GKMALELLRT 
NKVDLILMDI MMPVMDGYET IRAIKGDKEL KGIPVIAVTA KSLKSDKEKC IEAGADDYIS 
KPVDYDVLIR LIKAWTAKEN