| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_1562 |
|---|
| Symbol | |
|---|
| ID | 8368006 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Capnocytophaga ochracea DSM 7271 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013162 |
|---|
| Strand | + |
|---|
| Start bp | 1860735 |
|---|
| End bp | 1864625 |
|---|
| Gene Length | 3891 bp |
|---|
| Protein Length | 1296 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 644984001 |
|---|
| Product | histidine kinase |
|---|
| Protein accession | YP_003141668 |
|---|
| Protein GI | 256820389 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.655639 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATAA TAAAACTATC ATCGGTGCTT GGCACTTGTA TCTTACTTTT TTTTACGTGG
GTAATCTACG GGCAAAACCC TACGGAATAC TATTTTAAAC GTATTTCCAT TGAACACGGT
CTCTCTCAAT CGGGCGTTAC CGCTATTGTA CGTGACCATA AGGGAATTTT GTGGATAGGT
ACTCGCCAGG GTATCAATAG GGTAGACCGT AATCATATCA AAAGGTATAC TGAGTCTTAC
ATCTATCATC TTTATGAAGA TACCCAGCAT AACCTTTGGG CTGTAACCGA TAAAGGCGTA
TGGCAATACG ACCCAAATAA AGATACTTTT ACCTCTAAAA TCCAGCAACA ACTCTTCTCT
ATTTGTGCTA CTGAACAAGG GGTTTACTTT GGTGGATATA GTGCTATCTA CCAGTATAAC
TACAAAACTA AAAATATAGG GCGTTTGCCT TTGAGGAAAG AACCTAAAAC AAAAGATAAA
GAATGCCTCA TTACCTATCT ATGCCCTGTT GATAATACAA CCTTTCTTGT AGGTACTGAA
AACGATGGTA TTTATAAGTA TTCTCTTACC TCAGAACTGT TGAGTTTGTT TATTGAAAAT
ACAAGCCCGC TGAGTTCTTT GTATTATGAT GCACAACGCA AAGAAGTGTA TTATTCTATT
TTTCAAAAAG GGCTTTTTCG TGCTACCCTT GCAGGTGAAT TGCGCTCACA TTACGATACT
CACAATACTC TTTTGTCCAA TGATATTATC TTAGATATCA AGCCTTATAA AGGCAATATA
TGGTTAGCCA CCGATGGGGG AGGAGTATCG GTTTTTAGTC CTGAGAAGAA CACTTTTTAC
AATATTCAGC ATAGTGCCGG TAATATACAT TCCTTGCCGG TCAATTCCAT TACAGTGCTT
TATGAAGATC CTAATCATAA CCTTTGGGCA GGTACAGTGC GCGATGGTGT TTTTCTCTTT
AAAGAAACCT ATATCAAGAC TTATACTGAT AGTGCGTTAG GAAGTAGCAA TGGGTTAAGT
GAACGCGCTG TAATAAGTTT GTTCGAAGCT CCCAATGGTA TCATATGGAT AGGCACCGAT
GGAGGAGGCA TCAATGCTTT TAACCCCAAA ACAGAACAAT TTGTACATCA TACCAATACG
TATAACGATA AGGTCTCTTC TATAACCTAC TTTTCACCTA ATGAGTTGTT AGTCTCTCTT
TATGGCAAAG GTCTTTTCAT ATATAATATT CTGAGTCGTT CCTACACTCC TTTCTTGCTC
ATCGATGAAG CTACTGACCA GCAAGAGTGT CACGCAGGCT TTACTCCCTT TGTATATCAC
ATTGATAAAG ATAAAATACT TATTACAGCT AAAAACACCT ATCTGTATAA TCTTCAAAAC
AAAGAGTTTA ATAAAATTTC TTTTGCCGAA GGACTTACTC CTAAAAATGC CCTACAACTC
AAAGCACAAC AAGGTGATAC TTTATTTCTC TCCAAAGGAA ATGTACTCTA CCAAATGAAG
TTATCGGAAG CTAAGATAAC ACGTTATCTA ACTCTTAATG AGGGGTATAC TATTAGTGCA
GTATGCAATG ATAAAGCTCA TCACACCCTG TGGATTGCTA CTTCCAACGG GTTATTTAGC
TATGCGATAC CACAAAAGAA GCTCAGTGCC GTAGGAACCG ATAATATGTT CCACCAAATT
AGCTATATGC AACTCGATAC TGAACAGCGT TTGTGGATTA ATGCTTCCAA TGTGCTATTT
TCTTATCATA TTCCCGATAA GAAGATAATG ATTTGGGACG ATTCTGATGG TTTTCTCCAC
AACGATGTGC TTACAGGCTA TGTACAGTTG TTGCCTTCCC CTTACATCTA TATGGGAGGA
GTGGGTGGTT TTGTGAAGAT AAATAAGAAT ATTCACACCG AAGAGAGTAG TACTCCTTTA
CTCTTTTTGC AAAATATAGA ATTGAACGGC AAAATATACA CCGCCGAAAA CTTTCCTAAA
GAGGTACCCC CTTATTTCAA AACCTTAAAA CTAAATGTAG GATTGAATGA AAAAGATATG
TTTAGGCGCA TACTCTTCCG TTTTAAGATT AAAAATAACG CCCAAACTTC GGTGATTGAA
ACTTATGACA ATAGTTTAGA TATCTCTTTG CTTTCAGTAG GAAAATACCA AGTAGAAGTC
GCTTGTATGA CTAAAAATGG CTATTGGACG AAAGATACCT CATTGCTCAA CTTCGAAGTG
CTTCCTGTGT GGTATCAGCG CACTTCTTTT TTGGTAGGAA TTTCTTTGCT TTTGTTGGCT
ATTATTGCAG GTGTAATGTG GGGTTATCTG CGTCGTAAAA AACAACAACT CAAATGGCAA
ATAGCTTTGC ATCAGCAGGA ACTCAATGAA GATAAAATAC AATTCCTCAC CAATGTAAGT
CACGAATTGC GCACGCCTCT TACCCTCATT TATGCACCGT TAAAGCGTCT GCTTAATCAT
ACCGAGAGTA GTAAACTCAC GCGTTCACAG AAAACTCAGT TAGAGAGTGC TTTCCGTCAA
GCTACTACTA TGAAGAATAT TATCAATTGG GTATTAGACT ATAACCGTAA TACTTCGTTA
GAAAATACAC TCACCAAAGC CTATACTGAT TTGAATCACC TTATCACCGA TAGTGCTAAA
GATTTTGAAC AAGAATTTGA AACAAAGCAT ATAAGTTTAG AACTACATCT CGATAAAAAT
TTACCCCCTG TAGAGTTAGA TAGTGCCAAA ATAAGGGTAG TCCTTTCTAA CTTACTAATG
AATGCAGTAA AGTTTAGTAA TGAGTATTCT ACTATACACA TTCGCAGTAG TTATAACGAA
CAAAAAGTGC GTTTTCAAGT AGAAAATACC GGTATAGGAT TGCATAATAT TGATATGGAT
AAGCTCTTTA CTCGCTTTGA ACAAGGAAAA CACAACCAGC GAGGTAGTGG TATAGGGTTG
GCTTATTGTA AAGAATTAGT AGAGAAACAT CTCGGTACTA TTGGGGCTTA TCAAGATGAA
GAAGAGCAAA CAGTTTTTTA TGTAGAATTA CCTTACTCTC ATAGCACTGA GGGCGTCCTT
CACAAGTTTG AAGGTGAAGA AGAACAAACT GAAGCCCCAG AGAAGATAGC AGTAACTATG
GATACCTCTA TGTATTCTGT ACTCTTGGTA GATGATAATC CTGATTTTTT AAATTATCTT
TATGATGAAC TTCGTCCGTT GTTTAAAAGC GTTTTAAAAG CAGTAAATGG TGAGGAGGCT
TTGTTGTTAT TAAAAACGCA TCAGCCCGAT ATTATCATTA GCGATGTGAT GATGCCTGTA
ATGAATGGTT ATCAGTTGTG TAAAGAGGTG AAAGAGCATT TACAAATCAG TCATATTCCC
GTAATATTAC TCACGGCTAA AAGTGATACC GAAAGTCAAA AGATAGGCTA TAAATTAGGT
GCCGATGCTT ATCTCTCTAA ACCTTTTGAT ATAGACCTTT TGCTTTCAGT AATAAGTAAT
TTGTTCAAAC AAAAAGAGCT CATCAAGCAA CGTTATGAAA AAGAACTATT GATTCCTTCA
CCTGCACTTA CTACTATCAG CAATGCTGAC GAAGTGTTTA TGATAAAACT TAATGAAATC
ATCAAAAAGC ACTATAGTAA TATTGACTTA GATGTAACAA AGATTTCTGA AGCAATGGCA
ATGAGTCGTG CTTCGGTGTA TAATAAAATG AAACAAATTA CAGGTATTGG TATCAGTGAA
TATATCAATA AGTATCGCAT AGAAGTAGCT TGTCAGCTCT TAAAACAAAC AGAAAAATCA
GTTACTGATA TAGCTTTTGA AGTAGGATTT AACTCTTCTA AGTATTTTAG TACAGTTTTT
AAACAAGCTA CTAAAATAAC GCCACGTGAT TATAGAGAAG GTATGAAGTG A
|
|---|
| Protein sequence | MKIIKLSSVL GTCILLFFTW VIYGQNPTEY YFKRISIEHG LSQSGVTAIV RDHKGILWIG
TRQGINRVDR NHIKRYTESY IYHLYEDTQH NLWAVTDKGV WQYDPNKDTF TSKIQQQLFS
ICATEQGVYF GGYSAIYQYN YKTKNIGRLP LRKEPKTKDK ECLITYLCPV DNTTFLVGTE
NDGIYKYSLT SELLSLFIEN TSPLSSLYYD AQRKEVYYSI FQKGLFRATL AGELRSHYDT
HNTLLSNDII LDIKPYKGNI WLATDGGGVS VFSPEKNTFY NIQHSAGNIH SLPVNSITVL
YEDPNHNLWA GTVRDGVFLF KETYIKTYTD SALGSSNGLS ERAVISLFEA PNGIIWIGTD
GGGINAFNPK TEQFVHHTNT YNDKVSSITY FSPNELLVSL YGKGLFIYNI LSRSYTPFLL
IDEATDQQEC HAGFTPFVYH IDKDKILITA KNTYLYNLQN KEFNKISFAE GLTPKNALQL
KAQQGDTLFL SKGNVLYQMK LSEAKITRYL TLNEGYTISA VCNDKAHHTL WIATSNGLFS
YAIPQKKLSA VGTDNMFHQI SYMQLDTEQR LWINASNVLF SYHIPDKKIM IWDDSDGFLH
NDVLTGYVQL LPSPYIYMGG VGGFVKINKN IHTEESSTPL LFLQNIELNG KIYTAENFPK
EVPPYFKTLK LNVGLNEKDM FRRILFRFKI KNNAQTSVIE TYDNSLDISL LSVGKYQVEV
ACMTKNGYWT KDTSLLNFEV LPVWYQRTSF LVGISLLLLA IIAGVMWGYL RRKKQQLKWQ
IALHQQELNE DKIQFLTNVS HELRTPLTLI YAPLKRLLNH TESSKLTRSQ KTQLESAFRQ
ATTMKNIINW VLDYNRNTSL ENTLTKAYTD LNHLITDSAK DFEQEFETKH ISLELHLDKN
LPPVELDSAK IRVVLSNLLM NAVKFSNEYS TIHIRSSYNE QKVRFQVENT GIGLHNIDMD
KLFTRFEQGK HNQRGSGIGL AYCKELVEKH LGTIGAYQDE EEQTVFYVEL PYSHSTEGVL
HKFEGEEEQT EAPEKIAVTM DTSMYSVLLV DDNPDFLNYL YDELRPLFKS VLKAVNGEEA
LLLLKTHQPD IIISDVMMPV MNGYQLCKEV KEHLQISHIP VILLTAKSDT ESQKIGYKLG
ADAYLSKPFD IDLLLSVISN LFKQKELIKQ RYEKELLIPS PALTTISNAD EVFMIKLNEI
IKKHYSNIDL DVTKISEAMA MSRASVYNKM KQITGIGISE YINKYRIEVA CQLLKQTEKS
VTDIAFEVGF NSSKYFSTVF KQATKITPRD YREGMK
|
|---|
| |