More than 300 homologs were found in PanDaTox collection
for query gene Dole_1977 on replicon NC_009943
Organism: Desulfococcus oleovorans Hxd3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009943  Dole_1977  response regulator receiver protein  100 
 
 
265 aa  541  1e-153  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_1938  response regulator receiver protein  44.3 
 
 
244 aa  218  7e-56  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_1048  response regulator receiver protein  42.53 
 
 
814 aa  175  9e-43  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_1260  response regulator receiver protein  38.05 
 
 
331 aa  145  5e-34  Meiothermus ruber DSM 1279  Bacteria  normal  0.208704  normal 
 
 
-
 
NC_013440  Hoch_6827  response regulator receiver protein  33.76 
 
 
389 aa  124  2e-27  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_009943  Dole_0049  response regulator receiver protein  31.56 
 
 
226 aa  114  1.0000000000000001e-24  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_3814  response regulator receiver protein  29.78 
 
 
735 aa  88.2  1e-16  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.706947  hitchhiker  0.0056347 
 
 
-
 
NC_007760  Adeh_3688  response regulator receiver domain-containing protein  29.11 
 
 
718 aa  85.9  6e-16  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_6888  response regulator receiver protein  28.03 
 
 
875 aa  85.5  7e-16  Haliangium ochraceum DSM 14365  Bacteria  normal  0.3668  normal 
 
 
-
 
NC_011891  A2cp1_3829  response regulator receiver protein  28.12 
 
 
713 aa  84.3  0.000000000000002  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.0106552  n/a   
 
 
-
 
NC_011145  AnaeK_3746  response regulator receiver protein  28.64 
 
 
714 aa  84.3  0.000000000000002  Anaeromyxobacter sp. K  Bacteria  normal  0.374039  n/a   
 
 
-
 
NC_014150  Bmur_2539  response regulator receiver protein  36.75 
 
 
130 aa  80.1  0.00000000000004  Brachyspira murdochii DSM 12563  Bacteria  normal  0.745401  n/a   
 
 
-
 
NC_009092  Shew_0114  response regulator receiver protein  38.02 
 
 
120 aa  80.1  0.00000000000004  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_013162  Coch_1562  histidine kinase  34.43 
 
 
1296 aa  78.2  0.0000000000001  Capnocytophaga ochracea DSM 7271  Bacteria  normal  0.655639  n/a   
 
 
-
 
NC_013501  Rmar_1797  two component, sigma54 specific, transcriptional regulator, Fis family  36.67 
 
 
461 aa  78.2  0.0000000000001  Rhodothermus marinus DSM 4252  Bacteria  normal  0.774224  n/a   
 
 
-
 
NC_002967  TDE1969  sigma-54 dependent transcriptional regulator/response regulator  37.19 
 
 
473 aa  77.4  0.0000000000002  Treponema denticola ATCC 35405  Bacteria  normal  0.440374  n/a   
 
 
-
 
NC_009456  VC0395_0147  chemotaxis protein CheY  32.23 
 
 
119 aa  77.4  0.0000000000002  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_011883  Ddes_0816  response regulator receiver protein  34.62 
 
 
157 aa  77.8  0.0000000000002  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_0435  response regulator receiver protein  41.8 
 
 
124 aa  77.4  0.0000000000002  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.00876892  n/a   
 
 
-
 
NC_009523  RoseRS_0338  response regulator receiver modulated metal dependent phosphohydrolase  34.75 
 
 
513 aa  76.6  0.0000000000004  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.102838 
 
 
-
 
NC_010571  Oter_0680  two component, sigma54 specific, Fis family transcriptional regulator  36.67 
 
 
418 aa  75.9  0.0000000000006  Opitutus terrae PB90-1  Bacteria  normal  0.736075  normal 
 
 
-
 
NC_009943  Dole_1341  response regulator receiver protein  38.79 
 
 
301 aa  76.3  0.0000000000006  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_008346  Swol_0334  response regulator receiver protein  35.58 
 
 
124 aa  75.9  0.0000000000006  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  hitchhiker  0.00357504  n/a   
 
 
-
 
NC_007643  Rru_A1398  response regulator receiver domain-containing protein  33.33 
 
 
123 aa  75.9  0.0000000000007  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.503734  n/a   
 
 
-
 
NC_008340  Mlg_0359  CheA signal transduction histidine kinases  35.54 
 
 
1834 aa  75.5  0.0000000000009  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.505566  normal  0.609353 
 
 
-
 
NC_013385  Adeg_0532  two component, sigma54 specific, transcriptional regulator, Fis family  39.66 
 
 
470 aa  74.7  0.000000000001  Ammonifex degensii KC4  Bacteria  hitchhiker  0.00706375  n/a   
 
 
-
 
NC_012918  GM21_0684  two component, sigma54 specific, transcriptional regulator, Fis family  41.51 
 
 
469 aa  74.7  0.000000000001  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.0000000000150794 
 
 
-
 
NC_007517  Gmet_2679  response regulator receiver domain-containing protein  38.33 
 
 
129 aa  75.1  0.000000000001  Geobacter metallireducens GS-15  Bacteria  normal  0.380915  normal  0.27601 
 
 
-
 
NC_007908  Rfer_2738  response regulator receiver domain-containing protein  37.84 
 
 
194 aa  75.1  0.000000000001  Rhodoferax ferrireducens T118  Bacteria  hitchhiker  0.000186206  n/a   
 
 
-
 
NC_009831  Ssed_0187  response regulator receiver protein  36.36 
 
 
120 aa  75.1  0.000000000001  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_0913  response regulator receiver sensor hybrid histidine kinase  37.9 
 
 
544 aa  74.7  0.000000000001  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_1085  putative two component, sigma54 specific, transcriptional regulator, Fis family  39.47 
 
 
445 aa  75.1  0.000000000001  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_3494  response regulator receiver protein  36.36 
 
 
120 aa  74.7  0.000000000001  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.313433 
 
 
-
 
NC_013061  Phep_2648  response regulator receiver  30.4 
 
 
1363 aa  74.3  0.000000000002  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_2553  response regulator receiver protein  36 
 
 
126 aa  73.9  0.000000000002  Geobacter sp. M21  Bacteria  n/a    hitchhiker  2.1194499999999997e-20 
 
 
-
 
NC_009784  VIBHAR_06228  hypothetical protein  36.29 
 
 
334 aa  73.9  0.000000000002  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009943  Dole_1357  response regulator receiver protein  39.32 
 
 
144 aa  74.3  0.000000000002  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.48275  n/a   
 
 
-
 
NC_009943  Dole_1777  two component, sigma54 specific, Fis family transcriptional regulator  36.89 
 
 
465 aa  74.3  0.000000000002  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1660  response regulator receiver protein  36 
 
 
126 aa  73.9  0.000000000002  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_3651  two component, sigma54 specific, Fis family transcriptional regulator  40.35 
 
 
445 aa  73.9  0.000000000002  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A2938  transcriptional regulator ZraR  38.84 
 
 
445 aa  73.6  0.000000000003  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C2825  transcriptional regulator ZraR  38.84 
 
 
445 aa  73.6  0.000000000003  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.479389  normal 
 
 
-
 
NC_011004  Rpal_0146  response regulator receiver protein  33.87 
 
 
121 aa  73.9  0.000000000003  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A2804  transcriptional regulatory protein ZraR  38.84 
 
 
445 aa  73.6  0.000000000003  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B2721  sigma-54 dependent transcriptional regulator/response regulator  38.84 
 
 
445 aa  73.6  0.000000000003  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_3404  two component, sigma54 specific, Fis family transcriptional regulator  36.52 
 
 
455 aa  73.9  0.000000000003  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.235439  normal  0.675632 
 
 
-
 
NC_011146  Gbem_0671  two component, sigma54 specific, transcriptional regulator, Fis family  40.57 
 
 
469 aa  73.6  0.000000000003  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_2980  response regulator receiver protein  35.54 
 
 
138 aa  73.9  0.000000000003  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_2284  response regulator receiver protein  33.33 
 
 
121 aa  73.9  0.000000000003  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_4153  two component, sigma54 specific, transcriptional regulator, Fis family  37.21 
 
 
466 aa  73.6  0.000000000003  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.11717 
 
 
-
 
NC_011080  SNSL254_A2763  transcriptional regulator ZraR  38.84 
 
 
445 aa  73.6  0.000000000003  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_2723  histidine kinase  32 
 
 
1347 aa  73.6  0.000000000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_3076  two component, sigma54 specific, transcriptional regulator, Fis family  37.61 
 
 
454 aa  73.2  0.000000000004  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_2395  response regulator receiver modulated metal dependent phosphohydrolase  36.75 
 
 
491 aa  73.2  0.000000000004  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.357639  normal  0.166027 
 
 
-
 
NC_008228  Patl_1836  two component AraC family transcriptional regulator  34.19 
 
 
1341 aa  73.6  0.000000000004  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_3765  two component, sigma54 specific, Fis family transcriptional regulator  35.65 
 
 
463 aa  73.2  0.000000000004  Syntrophobacter fumaroxidans MPOB  Bacteria  decreased coverage  0.000821276  normal 
 
 
-
 
NC_010501  PputW619_3696  two component, sigma54 specific, Fis family transcriptional regulator  35.96 
 
 
458 aa  73.2  0.000000000005  Pseudomonas putida W619  Bacteria  normal  0.12736  normal 
 
 
-
 
NC_011901  Tgr7_2900  putative CheA signal transduction histidine kinase  35.29 
 
 
1974 aa  72.8  0.000000000005  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_2224  putative two-component regulatory system, sensor kinase protein  38.6 
 
 
1082 aa  72.4  0.000000000006  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_2145  two component, sigma54 specific, Fis family transcriptional regulator  37.01 
 
 
446 aa  72.8  0.000000000006  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_1772  response regulator receiver protein  31.06 
 
 
151 aa  72.8  0.000000000006  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_013411  GYMC61_3444  response regulator receiver protein  38.26 
 
 
120 aa  72.8  0.000000000006  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009012  Cthe_0287  GAF sensor hybrid histidine kinase  38.46 
 
 
1160 aa  72.8  0.000000000006  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_2021  Hpt sensor hybrid histidine kinase  38.6 
 
 
1082 aa  72.4  0.000000000006  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_4812  response regulator receiver protein  33.33 
 
 
121 aa  72.8  0.000000000006  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  hitchhiker  0.00197217 
 
 
-
 
NC_009076  BURPS1106A_2077  sensor histidine kinase/response regulator  38.6 
 
 
1082 aa  72.4  0.000000000006  Burkholderia pseudomallei 1106a  Bacteria  normal  0.981024  n/a   
 
 
-
 
NC_009253  Dred_1312  two component, sigma54 specific, Fis family transcriptional regulator  37.39 
 
 
455 aa  72.8  0.000000000006  Desulfotomaculum reducens MI-1  Bacteria  normal  0.502008  n/a   
 
 
-
 
NC_009483  Gura_2934  response regulator receiver protein  36.36 
 
 
129 aa  72.4  0.000000000007  Geobacter uraniireducens Rf4  Bacteria  unclonable  0.0000000000852899  n/a   
 
 
-
 
NC_013411  GYMC61_1696  two component transcriptional regulator, winged helix family  38.71 
 
 
224 aa  72.4  0.000000000007  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_002939  GSU0372  sigma-54 dependent DNA-binding response regulator  39.17 
 
 
461 aa  72.4  0.000000000008  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU2212  chemotaxis protein CheY  32.5 
 
 
128 aa  72  0.000000000008  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_5047  two component, sigma54 specific, Fis family transcriptional regulator  33.62 
 
 
387 aa  72  0.000000000008  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0897789  n/a   
 
 
-
 
NC_011206  Lferr_0029  two component, sigma54 specific, transcriptional regulator, Fis family  40.77 
 
 
455 aa  72  0.000000000009  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.59486  normal  0.125276 
 
 
-
 
NC_007908  Rfer_2735  response regulator receiver domain-containing protein  42.86 
 
 
242 aa  72  0.000000000009  Rhodoferax ferrireducens T118  Bacteria  normal  0.284606  n/a   
 
 
-
 
NC_011761  AFE_0027  sigma-54 dependent transcriptional regulator/response regulator  40.77 
 
 
455 aa  72  0.000000000009  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_3334  response regulator receiver protein  37.39 
 
 
120 aa  71.6  0.00000000001  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2786  two component, sigma54 specific, transcriptional regulator, Fis family  36.57 
 
 
480 aa  72  0.00000000001  Geobacter lovleyi SZ  Bacteria  normal  0.543097  n/a   
 
 
-
 
NC_007413  Ava_3779  CheA Signal transduction histidine Kinases (STHK)  35.48 
 
 
1180 aa  71.2  0.00000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.274137 
 
 
-
 
NC_007498  Pcar_2345  two component signal transduction response regulator  35.65 
 
 
455 aa  72  0.00000000001  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00459366  n/a   
 
 
-
 
NC_007512  Plut_0344  two component Fis family transcriptional regulator  36.89 
 
 
452 aa  72  0.00000000001  Chlorobium luteolum DSM 273  Bacteria  normal  0.0882822  normal  0.355114 
 
 
-
 
NC_010814  Glov_1377  two component, sigma54 specific, transcriptional regulator, Fis family  37.72 
 
 
462 aa  72  0.00000000001  Geobacter lovleyi SZ  Bacteria  normal  0.244526  n/a   
 
 
-
 
NC_013440  Hoch_5989  two component, sigma54 specific, transcriptional regulator, Fis family  37.01 
 
 
459 aa  71.6  0.00000000001  Haliangium ochraceum DSM 14365  Bacteria  normal  0.999422  normal 
 
 
-
 
NC_012918  GM21_2828  two component, sigma54 specific, transcriptional regulator, Fis family  34.65 
 
 
444 aa  71.6  0.00000000001  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_008554  Sfum_0643  two component, sigma54 specific, Fis family transcriptional regulator  35.25 
 
 
478 aa  71.6  0.00000000001  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_011060  Ppha_1319  two component, sigma54 specific, transcriptional regulator, Fis family  39.83 
 
 
452 aa  71.2  0.00000000001  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_3553  transcriptional regulator, Crp/Fnr family  39.83 
 
 
348 aa  71.6  0.00000000001  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.528491 
 
 
-
 
NC_012917  PC1_3049  putative two component, sigma54 specific, transcriptional regulator, Fis family  37.93 
 
 
445 aa  71.6  0.00000000001  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_3202  response regulator receiver protein  40 
 
 
117 aa  71.6  0.00000000001  Pseudomonas putida W619  Bacteria  normal  0.529191  normal 
 
 
-
 
NC_002939  GSU1117  response regulator  37.19 
 
 
127 aa  71.2  0.00000000002  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_3138  two component transcriptional regulator  33.09 
 
 
224 aa  70.9  0.00000000002  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_1259  two component, sigma54 specific, Fis family transcriptional regulator  38.6 
 
 
445 aa  70.9  0.00000000002  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_1226  putative two component, sigma54 specific, transcriptional regulator, Fis family  37.72 
 
 
445 aa  70.5  0.00000000002  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_2025  chemotaxis-specific methylesterase  36.75 
 
 
349 aa  70.9  0.00000000002  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009708  YpsIP31758_1152  sigma-54 dependent DNA-binding response regulator  38.6 
 
 
445 aa  70.9  0.00000000002  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_3158  two component, sigma54 specific, Fis family transcriptional regulator  36.67 
 
 
462 aa  70.9  0.00000000002  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_0435  response regulator receiver protein  40.18 
 
 
383 aa  70.9  0.00000000002  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_4648  response regulator receiver protein  26.34 
 
 
253 aa  71.2  0.00000000002  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.485097  normal 
 
 
-
 
NC_009441  Fjoh_3872  histidine kinase  32.23 
 
 
1373 aa  70.5  0.00000000002  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0459124  n/a   
 
 
-
 
NC_011146  Gbem_1426  two component, sigma54 specific, transcriptional regulator, Fis family  34.65 
 
 
444 aa  70.9  0.00000000002  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A3629  two-component system response regulator  38.6 
 
 
445 aa  70.9  0.00000000002  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
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