More than 300 homologs were found in PanDaTox collection
for query gene PP_3833 on replicon NC_002947
Organism: Pseudomonas putida KT2440



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002947  PP_3833  response regulator receiver protein  100 
 
 
117 aa  236  6.999999999999999e-62  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_1937  response regulator receiver protein  98.29 
 
 
117 aa  234  3e-61  Pseudomonas putida F1  Bacteria  normal  0.29733  normal 
 
 
-
 
NC_010322  PputGB1_3548  response regulator receiver protein  94.87 
 
 
117 aa  226  1e-58  Pseudomonas putida GB-1  Bacteria  normal  normal  0.0400953 
 
 
-
 
NC_010501  PputW619_3202  response regulator receiver protein  80.34 
 
 
117 aa  186  9e-47  Pseudomonas putida W619  Bacteria  normal  0.529191  normal 
 
 
-
 
NC_010623  Bphy_4784  response regulator receiver protein  46.96 
 
 
131 aa  96.3  1e-19  Burkholderia phymatum STM815  Bacteria  normal  0.724017  normal  0.683358 
 
 
-
 
NC_010623  Bphy_4785  response regulator receiver protein  42.24 
 
 
118 aa  89.7  1e-17  Burkholderia phymatum STM815  Bacteria  normal  0.526141  normal  0.692787 
 
 
-
 
NC_010511  M446_5172  response regulator receiver protein  41.28 
 
 
129 aa  81.3  0.000000000000004  Methylobacterium sp. 4-46  Bacteria  normal  0.611676  normal  0.0583946 
 
 
-
 
NC_013525  Tter_0173  response regulator receiver protein  36.75 
 
 
119 aa  79  0.00000000000002  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009675  Anae109_3956  response regulator receiver protein  38.05 
 
 
128 aa  78.6  0.00000000000003  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.314568 
 
 
-
 
NC_007484  Noc_2401  phosphate regulon transcriptional regulatory protein phoB  35.4 
 
 
229 aa  78.2  0.00000000000003  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B0483  response regulator receiver domain-containing protein  35.96 
 
 
116 aa  77.8  0.00000000000004  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_007760  Adeh_1095  response regulator receiver domain-containing protein  34.48 
 
 
138 aa  77.8  0.00000000000005  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.117755  n/a   
 
 
-
 
NC_011891  A2cp1_1223  response regulator receiver protein  34.48 
 
 
132 aa  77.8  0.00000000000005  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_1134  response regulator receiver protein  34.48 
 
 
138 aa  77.4  0.00000000000005  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.461969  hitchhiker  0.00297359 
 
 
-
 
NC_011145  AnaeK_1155  response regulator receiver protein  34.48 
 
 
132 aa  77.8  0.00000000000005  Anaeromyxobacter sp. K  Bacteria  normal  0.194588  n/a   
 
 
-
 
NC_011831  Cagg_2064  response regulator receiver protein  36.13 
 
 
128 aa  77  0.00000000000007  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_011891  A2cp1_0828  response regulator receiver protein  36.84 
 
 
122 aa  77  0.00000000000007  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  hitchhiker  0.0000089442  n/a   
 
 
-
 
NC_008009  Acid345_0488  response regulator receiver protein  39.56 
 
 
123 aa  77  0.00000000000007  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_4677  response regulator receiver domain-containing protein  37.82 
 
 
121 aa  76.6  0.00000000000009  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_0442  response regulator receiver protein  38.26 
 
 
126 aa  76.3  0.0000000000001  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.0489543  normal 
 
 
-
 
NC_013440  Hoch_6875  response regulator receiver protein  36.75 
 
 
129 aa  76.6  0.0000000000001  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_5999  response regulator receiver protein  36.94 
 
 
280 aa  76.3  0.0000000000001  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_011145  AnaeK_0824  response regulator receiver protein  35.96 
 
 
122 aa  75.5  0.0000000000002  Anaeromyxobacter sp. K  Bacteria  normal  0.0263767  n/a   
 
 
-
 
NC_011884  Cyan7425_4627  two component transcriptional regulator, LuxR family  37.07 
 
 
226 aa  75.9  0.0000000000002  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_1343  response regulator receiver protein  33.33 
 
 
121 aa  75.9  0.0000000000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_0981  two component transcriptional regulator, LuxR family  37.19 
 
 
221 aa  75.1  0.0000000000003  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.416641 
 
 
-
 
NC_009831  Ssed_0187  response regulator receiver protein  36.67 
 
 
120 aa  74.3  0.0000000000005  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_1702  response regulator receiver protein  39.13 
 
 
145 aa  74.3  0.0000000000005  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_013385  Adeg_0644  two component transcriptional regulator, winged helix family  39.32 
 
 
236 aa  73.9  0.0000000000007  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_4445  two component transcriptional regulator  35.59 
 
 
229 aa  73.6  0.0000000000009  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.14031 
 
 
-
 
NC_007413  Ava_0301  two component LuxR family transcriptional regulator  33.62 
 
 
231 aa  73.6  0.0000000000009  Anabaena variabilis ATCC 29413  Bacteria  normal  0.54347  normal 
 
 
-
 
NC_007760  Adeh_0776  response regulator receiver domain-containing protein  36.61 
 
 
122 aa  73.6  0.0000000000009  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.0195762  n/a   
 
 
-
 
NC_009523  RoseRS_0761  two component transcriptional regulator  35.59 
 
 
229 aa  73.6  0.0000000000009  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.179681 
 
 
-
 
NC_010676  Bphyt_5729  response regulator receiver protein  36.79 
 
 
145 aa  73.2  0.000000000001  Burkholderia phytofirmans PsJN  Bacteria  normal  0.327194  normal 
 
 
-
 
NC_007796  Mhun_0493  response regulator receiver sensor signal transduction histidine kinase  45.57 
 
 
440 aa  73.2  0.000000000001  Methanospirillum hungatei JF-1  Archaea  normal  0.274957  normal 
 
 
-
 
NC_011832  Mpal_1331  multi-sensor signal transduction histidine kinase  33.62 
 
 
576 aa  72.8  0.000000000001  Methanosphaerula palustris E1-9c  Archaea  normal  normal 
 
 
-
 
NC_012034  Athe_0580  response regulator receiver protein  36.13 
 
 
123 aa  73.2  0.000000000001  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_0508  response regulator receiver domain-containing protein  34.96 
 
 
121 aa  72.4  0.000000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  0.481314  normal 
 
 
-
 
NC_011004  Rpal_0146  response regulator receiver protein  33.88 
 
 
121 aa  72.4  0.000000000002  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_3494  response regulator receiver protein  34.17 
 
 
120 aa  72.8  0.000000000002  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.313433 
 
 
-
 
NC_011726  PCC8801_1234  response regulator receiver protein  36.29 
 
 
122 aa  71.6  0.000000000003  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_010676  Bphyt_5913  response regulator receiver protein  35.09 
 
 
163 aa  71.6  0.000000000003  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_1562  response regulator receiver Signal transduction histidine kinase  35.59 
 
 
369 aa  71.6  0.000000000003  Anabaena variabilis ATCC 29413  Bacteria  normal  0.847548  normal  0.236297 
 
 
-
 
NC_007604  Synpcc7942_1860  two component LuxR family transcriptional regulator  37.93 
 
 
235 aa  71.6  0.000000000003  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_008312  Tery_4491  two component LuxR family transcriptional regulator  36.21 
 
 
233 aa  71.6  0.000000000003  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.697305 
 
 
-
 
NC_013161  Cyan8802_1264  response regulator receiver protein  36.29 
 
 
122 aa  71.6  0.000000000003  Cyanothece sp. PCC 8802  Bacteria  normal  0.0578681  hitchhiker  0.00155192 
 
 
-
 
NC_009972  Haur_0725  CheA signal transduction histidine kinase  33.9 
 
 
762 aa  71.2  0.000000000004  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_4086  response regulator receiver protein  36.21 
 
 
123 aa  71.2  0.000000000004  Anaeromyxobacter sp. K  Bacteria  normal  0.0365078  n/a   
 
 
-
 
NC_009485  BBta_1991  two component transcriptional regulator  36.21 
 
 
235 aa  71.2  0.000000000005  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_1834  CheA signal transduction histidine kinases  37.61 
 
 
878 aa  71.2  0.000000000005  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_0725  response regulator receiver  34.45 
 
 
121 aa  70.9  0.000000000006  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.537285 
 
 
-
 
NC_011071  Smal_1853  response regulator receiver protein  34.19 
 
 
121 aa  70.9  0.000000000006  Stenotrophomonas maltophilia R551-3  Bacteria  hitchhiker  0.00571982  normal  0.853875 
 
 
-
 
NC_008751  Dvul_1541  response regulator receiver protein  36.75 
 
 
120 aa  70.9  0.000000000006  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_0505  response regulator receiver  35.04 
 
 
1334 aa  70.5  0.000000000007  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_4016  response regulator receiver protein  33.33 
 
 
116 aa  70.5  0.000000000007  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_1866  response regulator receiver modulated diguanylate cyclase  36.84 
 
 
326 aa  70.5  0.000000000008  Salinispora arenicola CNS-205  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_4456  PAS/PAC sensor hybrid histidine kinase  38.14 
 
 
1415 aa  70.1  0.000000000008  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_4050  two component transcriptional regulator, winged helix family  45.12 
 
 
227 aa  70.1  0.000000000009  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.00552008  n/a   
 
 
-
 
NC_009092  Shew_0114  response regulator receiver protein  35.29 
 
 
120 aa  70.1  0.000000000009  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_1246  CheA signal transduction histidine kinases  34.78 
 
 
1643 aa  70.1  0.000000000009  Methylobacillus flagellatus KT  Bacteria  normal  0.0708097  normal  0.755815 
 
 
-
 
NC_006274  BCZK1689  response regulator  40.35 
 
 
232 aa  69.3  0.00000000001  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_1011  two component transcriptional regulator, winged helix family  42.17 
 
 
231 aa  69.7  0.00000000001  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_0289  two component transcriptional regulator, winged helix family  37.5 
 
 
232 aa  70.1  0.00000000001  Sebaldella termitidis ATCC 33386  Bacteria  hitchhiker  0.0000126796  n/a   
 
 
-
 
NC_010814  Glov_0372  response regulator receiver protein  37.93 
 
 
340 aa  70.1  0.00000000001  Geobacter lovleyi SZ  Bacteria  normal  0.463682  n/a   
 
 
-
 
NC_014248  Aazo_4952  response regulator receiver protein  34.15 
 
 
121 aa  69.7  0.00000000001  'Nostoc azollae' 0708  Bacteria  normal  0.699568  n/a   
 
 
-
 
NC_007964  Nham_0640  two component transcriptional regulator  35.34 
 
 
233 aa  69.3  0.00000000001  Nitrobacter hamburgensis X14  Bacteria  normal  0.772339  n/a   
 
 
-
 
NC_008752  Aave_2238  response regulator receiver protein  38.66 
 
 
140 aa  69.7  0.00000000001  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0218186  hitchhiker  0.00000354209 
 
 
-
 
NC_005945  BAS1739  DNA-binding response regulator  40.35 
 
 
232 aa  68.6  0.00000000002  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_2142  chemotaxis protein cheY  33.04 
 
 
121 aa  69.3  0.00000000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_1873  response regulator receiver  37.5 
 
 
326 aa  68.9  0.00000000002  Salinispora tropica CNB-440  Bacteria  normal  normal  0.402703 
 
 
-
 
NC_010717  PXO_00031  chemotaxis response regulator  33.62 
 
 
116 aa  69.3  0.00000000002  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.371607  n/a   
 
 
-
 
NC_007335  PMN2A_1537  two component LuxR family transcriptional regulator  37.07 
 
 
242 aa  68.9  0.00000000002  Prochlorococcus marinus str. NATL2A  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_2324  two component LuxR family transcriptional regulator  34.19 
 
 
245 aa  68.9  0.00000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  0.42123  normal 
 
 
-
 
NC_009943  Dole_2257  response regulator receiver protein  36.28 
 
 
120 aa  68.9  0.00000000002  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_5261  two component transcriptional regulator, winged helix family  35.34 
 
 
237 aa  69.3  0.00000000002  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.909356  n/a   
 
 
-
 
NC_007530  GBAA_1877  DNA-binding response regulator  40.35 
 
 
232 aa  68.6  0.00000000002  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_0167  response regulator receiver protein  35 
 
 
120 aa  69.3  0.00000000002  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_3728  response regulator receiver protein  33.91 
 
 
128 aa  68.6  0.00000000002  Frankia sp. CcI3  Bacteria  normal  normal  0.445342 
 
 
-
 
NC_010424  Daud_1419  two component transcriptional regulator  34.78 
 
 
231 aa  69.3  0.00000000002  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.0720218  n/a   
 
 
-
 
NC_013525  Tter_1435  two component transcriptional regulator, winged helix family  35.65 
 
 
233 aa  68.9  0.00000000002  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008819  NATL1_02441  two-component response regulator  37.07 
 
 
242 aa  68.9  0.00000000002  Prochlorococcus marinus str. NATL1A  Bacteria  normal  0.72299  normal 
 
 
-
 
NC_011884  Cyan7425_4611  response regulator receiver sensor signal transduction histidine kinase  40 
 
 
1002 aa  68.9  0.00000000002  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.367657 
 
 
-
 
NC_008576  Mmc1_2112  Cache sensor hybrid histidine kinase  38.14 
 
 
1361 aa  68.6  0.00000000002  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_011773  BCAH820_1912  DNA-binding response regulator  40.35 
 
 
232 aa  68.9  0.00000000002  Bacillus cereus AH820  Bacteria  n/a    normal  0.0928779 
 
 
-
 
NC_013501  Rmar_0776  response regulator receiver protein  33.61 
 
 
121 aa  68.6  0.00000000003  Rhodothermus marinus DSM 4252  Bacteria  normal  0.428997  n/a   
 
 
-
 
NC_010002  Daci_0654  response regulator receiver protein  32.77 
 
 
120 aa  68.6  0.00000000003  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.54464 
 
 
-
 
NC_013757  Gobs_4814  histidine kinase  34.45 
 
 
919 aa  68.6  0.00000000003  Geodermatophilus obscurus DSM 43160  Bacteria  decreased coverage  0.00150972  n/a   
 
 
-
 
NC_007643  Rru_A0603  two component transcriptional regulator  33.62 
 
 
233 aa  68.6  0.00000000003  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0519325  n/a   
 
 
-
 
NC_007650  BTH_II0155  chemotaxis response regulator  34.17 
 
 
120 aa  68.6  0.00000000003  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_0202  two component transcriptional regulator  37.07 
 
 
233 aa  68.2  0.00000000003  Xanthobacter autotrophicus Py2  Bacteria  normal  0.382528  normal 
 
 
-
 
NC_011658  BCAH187_A1985  DNA-binding response regulator  39.47 
 
 
232 aa  68.2  0.00000000003  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A1869  DNA-binding response regulator  39.47 
 
 
232 aa  68.6  0.00000000003  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_3968  response regulator receiver protein  36.97 
 
 
125 aa  68.2  0.00000000003  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_011891  A2cp1_3674  response regulator receiver protein  35.45 
 
 
115 aa  68.2  0.00000000003  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.0959941  n/a   
 
 
-
 
NC_008699  Noca_1748  response regulator receiver  36.13 
 
 
123 aa  68.6  0.00000000003  Nocardioides sp. JS614  Bacteria  normal  0.122601  n/a   
 
 
-
 
NC_003909  BCE_1956  DNA-binding response regulator  39.47 
 
 
232 aa  68.2  0.00000000004  Bacillus cereus ATCC 10987  Bacteria  normal  0.387323  n/a   
 
 
-
 
NC_005957  BT9727_1715  response regulator  39.47 
 
 
232 aa  68.2  0.00000000004  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.0124001  n/a   
 
 
-
 
NC_007760  Adeh_1908  two component, sigma54 specific, Fis family transcriptional regulator  38.74 
 
 
473 aa  68.2  0.00000000004  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_1909  response regulator receiver protein  33.93 
 
 
119 aa  68.2  0.00000000004  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.00400917  n/a   
 
 
-
 
NC_008312  Tery_3248  response regulator receiver protein  31.71 
 
 
121 aa  68.2  0.00000000004  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.500247 
 
 
-
 
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