282 homologs were found in PanDaTox collection
for query gene Ppha_2805 on replicon NC_011060
Organism: Pelodictyon phaeoclathratiforme BU-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011060  Ppha_2805  Holliday junction resolvase YqgF  100 
 
 
145 aa  301  3.0000000000000004e-81  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_007514  Cag_0014  Holliday junction resolvase YqgF  63.97 
 
 
140 aa  188  2.9999999999999997e-47  Chlorobium chlorochromatii CaD3  Bacteria  normal  0.639301  n/a   
 
 
-
 
NC_008639  Cpha266_2570  Holliday junction resolvase YqgF  58.16 
 
 
142 aa  177  2.9999999999999997e-44  Chlorobium phaeobacteroides DSM 266  Bacteria  hitchhiker  0.00347975  n/a   
 
 
-
 
NC_010803  Clim_2406  Holliday junction resolvase YqgF  61.15 
 
 
142 aa  176  1e-43  Chlorobium limicola DSM 245  Bacteria  normal  0.406379  n/a   
 
 
-
 
NC_007512  Plut_2047  Holliday junction resolvase YqgF  57.55 
 
 
141 aa  173  6e-43  Chlorobium luteolum DSM 273  Bacteria  normal  normal 
 
 
-
 
NC_010831  Cphamn1_2429  Holliday junction resolvase YqgF  52.45 
 
 
144 aa  161  2.0000000000000002e-39  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal 
 
 
-
 
NC_011059  Paes_2162  Holliday junction resolvase YqgF  50 
 
 
142 aa  150  4e-36  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.337322  normal 
 
 
-
 
NC_013501  Rmar_0873  Holliday junction resolvase YqgF  40.15 
 
 
145 aa  108  3e-23  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_013162  Coch_1395  Holliday junction resolvase YqgF  35.04 
 
 
143 aa  94.4  5e-19  Capnocytophaga ochracea DSM 7271  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_1903  Holliday junction resolvase YqgF  35.82 
 
 
136 aa  91.3  4e-18  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_010830  Aasi_1327  Holliday junction resolvase-like protein  33.08 
 
 
141 aa  86.3  1e-16  Candidatus Amoebophilus asiaticus 5a2  Bacteria  n/a    normal  0.513618 
 
 
-
 
NC_008255  CHU_0692  Holliday junction resolvase-like protein  29.41 
 
 
152 aa  84.3  5e-16  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.458381 
 
 
-
 
NC_013730  Slin_5430  Holliday junction resolvase YqgF  32.61 
 
 
142 aa  82.8  0.000000000000001  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_2528  Holliday junction resolvase-like protein  32.09 
 
 
138 aa  82.8  0.000000000000002  Flavobacterium johnsoniae UW101  Bacteria  normal  0.551236  n/a   
 
 
-
 
NC_014230  CA2559_06155  Holliday junction resolvase-like protein  34.35 
 
 
135 aa  80.5  0.000000000000007  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_4051  Holliday junction resolvase YqgF  29.85 
 
 
137 aa  79  0.00000000000002  Dyadobacter fermentans DSM 18053  Bacteria  normal  hitchhiker  0.00000789262 
 
 
-
 
NC_013061  Phep_0074  Holliday junction resolvase YqgF  30.6 
 
 
138 aa  76.3  0.0000000000001  Pedobacter heparinus DSM 2366  Bacteria  normal  0.974882  normal 
 
 
-
 
NC_013205  Aaci_2024  Holliday junction resolvase YqgF  32.35 
 
 
144 aa  74.7  0.0000000000004  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.330713  n/a   
 
 
-
 
NC_002950  PG2202  Holliday junction resolvase-like protein  30.37 
 
 
138 aa  72.8  0.000000000002  Porphyromonas gingivalis W83  Bacteria  n/a    normal 
 
 
-
 
NC_009767  Rcas_3713  Holliday junction resolvase YqgF  30.28 
 
 
146 aa  72.8  0.000000000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0658941  hitchhiker  0.00476179 
 
 
-
 
NC_013522  Taci_1032  Holliday junction resolvase YqgF  31.11 
 
 
142 aa  69.3  0.00000000002  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_3225  Holliday junction resolvase YqgF  30.66 
 
 
141 aa  68.9  0.00000000002  Roseiflexus sp. RS-1  Bacteria  normal  0.387387  normal 
 
 
-
 
NC_008009  Acid345_0556  Holliday junction resolvase YqgF  34.04 
 
 
153 aa  68.6  0.00000000003  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.901255  normal  0.0480752 
 
 
-
 
NC_006369  lpl0621  Holliday junction resolvase-like protein  31.21 
 
 
139 aa  67.4  0.00000000007  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_010718  Nther_1778  Holliday junction resolvase YqgF  34.29 
 
 
141 aa  66.6  0.00000000009  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal  0.140554 
 
 
-
 
NC_011661  Dtur_1024  Holliday junction resolvase YqgF  31.62 
 
 
141 aa  66.2  0.0000000001  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_3562  Holliday junction resolvase-like protein  33.08 
 
 
142 aa  65.5  0.0000000002  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000000000000329746  n/a   
 
 
-
 
NC_011138  MADE_03294  Holliday junction resolvase-like protein  31.16 
 
 
143 aa  65.1  0.0000000003  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.659098  n/a   
 
 
-
 
NC_009901  Spea_1131  Holliday junction resolvase-like protein  31.88 
 
 
141 aa  65.1  0.0000000003  Shewanella pealeana ATCC 700345  Bacteria  normal  0.111461  n/a   
 
 
-
 
NC_006368  lpp0637  Holliday junction resolvase-like protein  30.5 
 
 
139 aa  64.3  0.0000000006  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_013517  Sterm_2739  Holliday junction resolvase YqgF  28.89 
 
 
137 aa  63.5  0.0000000009  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_008346  Swol_0470  Holliday junction resolvase YqgF  32.35 
 
 
141 aa  63.5  0.0000000009  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  unclonable  0.00000000599692  n/a   
 
 
-
 
NC_011126  HY04AAS1_0205  Holliday junction resolvase YqgF  28.57 
 
 
123 aa  63.2  0.000000001  Hydrogenobaculum sp. Y04AAS1  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_1236  Holliday junction resolvase-like protein  31.85 
 
 
139 aa  62.8  0.000000002  Shewanella sediminis HAW-EB3  Bacteria  normal  0.578906  normal  0.405452 
 
 
-
 
NC_013173  Dbac_1790  Holliday junction resolvase YqgF  32.35 
 
 
133 aa  62  0.000000002  Desulfomicrobium baculatum DSM 4028  Bacteria  decreased coverage  0.00751815  n/a   
 
 
-
 
NC_013411  GYMC61_0964  Holliday junction resolvase YqgF  34.29 
 
 
138 aa  62.4  0.000000002  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_012793  GWCH70_2488  Holliday junction resolvase YqgF  32.62 
 
 
138 aa  62  0.000000003  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.0000000680199  n/a   
 
 
-
 
NC_011898  Ccel_2239  Holliday junction resolvase-like protein  30.88 
 
 
142 aa  62  0.000000003  Clostridium cellulolyticum H10  Bacteria  decreased coverage  0.0000140275  n/a   
 
 
-
 
NC_013946  Mrub_2951  Holliday junction resolvase YqgF  33.82 
 
 
136 aa  61.2  0.000000004  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_2326  Holliday junction resolvase-like protein  31.34 
 
 
151 aa  61.2  0.000000005  Burkholderia phymatum STM815  Bacteria  normal  normal  0.0635951 
 
 
-
 
NC_007947  Mfla_2100  Holliday junction resolvase-like protein  32.59 
 
 
146 aa  61.2  0.000000005  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_013203  Apar_0458  Holliday junction resolvase YqgF  32.86 
 
 
140 aa  61.2  0.000000005  Atopobium parvulum DSM 20469  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_0500  Holliday junction resolvase-like protein  30.94 
 
 
143 aa  60.8  0.000000006  Dickeya zeae Ech1591  Bacteria  normal  0.23587  n/a   
 
 
-
 
NC_013385  Adeg_1438  Holliday junction resolvase YqgF  33.33 
 
 
146 aa  60.8  0.000000006  Ammonifex degensii KC4  Bacteria  normal  0.0335959  n/a   
 
 
-
 
NC_009665  Shew185_3035  Holliday junction resolvase-like protein  29.71 
 
 
141 aa  60.5  0.000000007  Shewanella baltica OS185  Bacteria  hitchhiker  0.00000814628  n/a   
 
 
-
 
NC_009997  Sbal195_3178  Holliday junction resolvase-like protein  29.71 
 
 
141 aa  60.5  0.000000007  Shewanella baltica OS195  Bacteria  hitchhiker  0.000555794  normal  0.0157194 
 
 
-
 
NC_012880  Dd703_0543  Holliday junction resolvase-like protein  34.27 
 
 
139 aa  60.5  0.000000007  Dickeya dadantii Ech703  Bacteria  normal  0.0491649  n/a   
 
 
-
 
NC_009052  Sbal_3020  Holliday junction resolvase-like protein  29.71 
 
 
141 aa  60.5  0.000000007  Shewanella baltica OS155  Bacteria  hitchhiker  0.00101053  n/a   
 
 
-
 
NC_011663  Sbal223_1343  Holliday junction resolvase-like protein  29.71 
 
 
141 aa  60.5  0.000000007  Shewanella baltica OS223  Bacteria  hitchhiker  0.00897927  hitchhiker  0.00000000052642 
 
 
-
 
NC_009438  Sputcn32_2682  Holliday junction resolvase-like protein  30.43 
 
 
141 aa  60.5  0.000000008  Shewanella putrefaciens CN-32  Bacteria  normal  0.0331396  n/a   
 
 
-
 
NC_004347  SO_3347  Holliday junction resolvase-like protein  30.43 
 
 
141 aa  60.1  0.000000009  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
CP001509  ECD_02779  Holliday junction resolvase-like protein  33.57 
 
 
138 aa  60.1  0.00000001  Escherichia coli BL21(DE3)  Bacteria  normal  0.358182  n/a   
 
 
-
 
NC_009080  BMA10247_1858  Holliday junction resolvase-like protein  33.57 
 
 
146 aa  59.3  0.00000001  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_3074  Holliday junction resolvase YqgF  31.21 
 
 
161 aa  59.7  0.00000001  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.459764 
 
 
-
 
NC_006348  BMA1996  Holliday junction resolvase-like protein  33.57 
 
 
146 aa  59.3  0.00000001  Burkholderia mallei ATCC 23344  Bacteria  normal  0.391575  n/a   
 
 
-
 
NC_009076  BURPS1106A_3147  Holliday junction resolvase-like protein  33.57 
 
 
146 aa  59.3  0.00000001  Burkholderia pseudomallei 1106a  Bacteria  normal  0.822464  n/a   
 
 
-
 
NC_007434  BURPS1710b_3169  Holliday junction resolvase-like protein  33.57 
 
 
146 aa  59.3  0.00000001  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A2747  Holliday junction resolvase-like protein  33.57 
 
 
146 aa  59.3  0.00000001  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_1336  Holliday junction resolvase-like protein  30.66 
 
 
139 aa  60.1  0.00000001  Shewanella woodyi ATCC 51908  Bacteria  normal  0.164432  hitchhiker  0.000378103 
 
 
-
 
NC_012892  B21_02742  hypothetical protein  33.57 
 
 
138 aa  60.1  0.00000001  Escherichia coli BL21  Bacteria  normal  0.395069  n/a   
 
 
-
 
NC_014151  Cfla_1819  Holliday junction resolvase YqgF  32.17 
 
 
190 aa  59.7  0.00000001  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0503115  normal 
 
 
-
 
NC_008309  HS_0010  Holliday junction resolvase-like protein  30.37 
 
 
141 aa  59.7  0.00000001  Haemophilus somnus 129PT  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_1198  Holliday junction resolvase-like protein  30.5 
 
 
141 aa  60.1  0.00000001  Shewanella sp. MR-4  Bacteria  hitchhiker  0.000276178  normal 
 
 
-
 
NC_008322  Shewmr7_1269  Holliday junction resolvase-like protein  30.5 
 
 
141 aa  60.1  0.00000001  Shewanella sp. MR-7  Bacteria  hitchhiker  0.000329275  normal 
 
 
-
 
NC_008345  Sfri_2849  Holliday junction resolvase-like protein  30.56 
 
 
139 aa  60.1  0.00000001  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_1199  Holliday junction resolvase-like protein  30.5 
 
 
141 aa  60.1  0.00000001  Shewanella sp. ANA-3  Bacteria  normal  0.0107111  normal  0.529497 
 
 
-
 
NC_008785  BMASAVP1_A0917  Holliday junction resolvase-like protein  33.57 
 
 
146 aa  59.3  0.00000001  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_3111  Holliday junction resolvase-like protein  33.57 
 
 
146 aa  59.7  0.00000001  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_0746  Holliday junction resolvase YqgF  34.06 
 
 
138 aa  59.3  0.00000002  Escherichia coli DH1  Bacteria  normal  0.61838  n/a   
 
 
-
 
NC_014212  Mesil_0224  Holliday junction resolvase YqgF  33.33 
 
 
135 aa  58.9  0.00000002  Meiothermus silvanus DSM 9946  Bacteria  normal  0.776353  normal  0.0108713 
 
 
-
 
NC_009800  EcHS_A3107  Holliday junction resolvase-like protein  34.06 
 
 
138 aa  59.3  0.00000002  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_3091  Holliday junction resolvase-like protein  34.06 
 
 
138 aa  59.3  0.00000002  Escherichia coli SMS-3-5  Bacteria  normal  0.372008  decreased coverage  0.00000514809 
 
 
-
 
NC_009801  EcE24377A_3292  Holliday junction resolvase-like protein  34.06 
 
 
138 aa  59.3  0.00000002  Escherichia coli E24377A  Bacteria  normal  0.684819  n/a   
 
 
-
 
NC_010658  SbBS512_E3381  Holliday junction resolvase-like protein  34.06 
 
 
138 aa  59.3  0.00000002  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_0765  Holliday junction resolvase-like protein  34.06 
 
 
138 aa  59.3  0.00000002  Escherichia coli ATCC 8739  Bacteria  normal  0.809741  hitchhiker  0.0000191582 
 
 
-
 
NC_011353  ECH74115_4252  Holliday junction resolvase-like protein  33.33 
 
 
138 aa  58.9  0.00000002  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.367892  normal  0.370097 
 
 
-
 
NC_011083  SeHA_C3336  Holliday junction resolvase-like protein  34.06 
 
 
138 aa  58.5  0.00000003  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.392173 
 
 
-
 
NC_013739  Cwoe_3035  Holliday junction resolvase YqgF  30.37 
 
 
133 aa  58.5  0.00000003  Conexibacter woesei DSM 14684  Bacteria  normal  0.0101605  normal  0.0662243 
 
 
-
 
NC_009674  Bcer98_3099  Holliday junction resolvase-like protein  29.66 
 
 
137 aa  58.2  0.00000003  Bacillus cytotoxicus NVH 391-98  Bacteria  hitchhiker  0.00212776  n/a   
 
 
-
 
NC_007651  BTH_I1463  Holliday junction resolvase-like protein  33.58 
 
 
146 aa  58.5  0.00000003  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_1211  Holliday junction resolvase YqgF  30.15 
 
 
138 aa  58.5  0.00000003  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.271637  n/a   
 
 
-
 
NC_008228  Patl_1154  Holliday junction resolvase YqgF  29.05 
 
 
143 aa  58.5  0.00000003  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_011149  SeAg_B3260  Holliday junction resolvase-like protein  34.06 
 
 
138 aa  58.5  0.00000003  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.254908  n/a   
 
 
-
 
NC_011080  SNSL254_A3344  Holliday junction resolvase-like protein  34.06 
 
 
138 aa  58.5  0.00000003  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.130119  normal  0.247443 
 
 
-
 
NC_010655  Amuc_1191  Holliday junction resolvase YqgF  28.37 
 
 
141 aa  58.5  0.00000003  Akkermansia muciniphila ATCC BAA-835  Bacteria  hitchhiker  0.0000237997  normal 
 
 
-
 
NC_011094  SeSA_A3271  Holliday junction resolvase-like protein  34.06 
 
 
138 aa  58.5  0.00000003  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal  0.0744312 
 
 
-
 
NC_012917  PC1_3713  Holliday junction resolvase-like protein  32.39 
 
 
139 aa  58.2  0.00000004  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0641904  n/a   
 
 
-
 
NC_010465  YPK_0836  Holliday junction resolvase-like protein  30.77 
 
 
140 aa  58.2  0.00000004  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.0695104  n/a   
 
 
-
 
NC_009708  YpsIP31758_0834  Holliday junction resolvase-like protein  30.77 
 
 
140 aa  58.2  0.00000004  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_007604  Synpcc7942_2398  Holliday junction resolvase-like protein  28.47 
 
 
149 aa  57.8  0.00000004  Synechococcus elongatus PCC 7942  Bacteria  normal  0.0366153  hitchhiker  0.00151496 
 
 
-
 
NC_013515  Smon_0417  Holliday junction resolvase YqgF  28.68 
 
 
142 aa  58.2  0.00000004  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_011205  SeD_A3440  Holliday junction resolvase-like protein  34.06 
 
 
138 aa  58.2  0.00000004  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  hitchhiker  0.00956364 
 
 
-
 
NC_008312  Tery_4379  Holliday junction resolvase-like protein  30.94 
 
 
149 aa  57.8  0.00000004  Trichodesmium erythraeum IMS101  Bacteria  normal  0.556882  normal  0.251804 
 
 
-
 
NC_010159  YpAngola_A3340  Holliday junction resolvase-like protein  30.77 
 
 
140 aa  58.2  0.00000004  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_2473  Holliday junction resolvase-like protein  29.41 
 
 
139 aa  58.2  0.00000004  Shewanella amazonensis SB2B  Bacteria  normal  0.641283  normal 
 
 
-
 
NC_009253  Dred_0775  Holliday junction resolvase YqgF  30.88 
 
 
137 aa  58.2  0.00000004  Desulfotomaculum reducens MI-1  Bacteria  unclonable  0.00000000463594  n/a   
 
 
-
 
NC_010730  SYO3AOP1_0474  Holliday junction resolvase YqgF  29.1 
 
 
145 aa  58.2  0.00000004  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  hitchhiker  0.00800439  n/a   
 
 
-
 
NC_009832  Spro_4028  Holliday junction resolvase-like protein  30.94 
 
 
140 aa  57.8  0.00000005  Serratia proteamaculans 568  Bacteria  normal  0.290268  hitchhiker  0.00115108 
 
 
-
 
NC_011831  Cagg_0094  Holliday junction resolvase YqgF  28.87 
 
 
142 aa  57.8  0.00000005  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.0018567  normal 
 
 
-
 
NC_009972  Haur_3633  Holliday junction resolvase YqgF  30.88 
 
 
158 aa  57.4  0.00000006  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
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