More than 300 homologs were found in PanDaTox collection
for query gene Cphamn1_2429 on replicon NC_010831
Organism: Chlorobium phaeobacteroides BS1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010831  Cphamn1_2429  Holliday junction resolvase YqgF  100 
 
 
144 aa  294  3e-79  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal 
 
 
-
 
NC_011059  Paes_2162  Holliday junction resolvase YqgF  56.03 
 
 
142 aa  168  3e-41  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.337322  normal 
 
 
-
 
NC_011060  Ppha_2805  Holliday junction resolvase YqgF  52.45 
 
 
145 aa  161  2.0000000000000002e-39  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_010803  Clim_2406  Holliday junction resolvase YqgF  54.89 
 
 
142 aa  160  5.0000000000000005e-39  Chlorobium limicola DSM 245  Bacteria  normal  0.406379  n/a   
 
 
-
 
NC_008639  Cpha266_2570  Holliday junction resolvase YqgF  53.57 
 
 
142 aa  159  1e-38  Chlorobium phaeobacteroides DSM 266  Bacteria  hitchhiker  0.00347975  n/a   
 
 
-
 
NC_007512  Plut_2047  Holliday junction resolvase YqgF  51.82 
 
 
141 aa  147  3e-35  Chlorobium luteolum DSM 273  Bacteria  normal  normal 
 
 
-
 
NC_007514  Cag_0014  Holliday junction resolvase YqgF  51.49 
 
 
140 aa  147  6e-35  Chlorobium chlorochromatii CaD3  Bacteria  normal  0.639301  n/a   
 
 
-
 
NC_013132  Cpin_1903  Holliday junction resolvase YqgF  42.96 
 
 
136 aa  112  1.0000000000000001e-24  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_2528  Holliday junction resolvase-like protein  39.1 
 
 
138 aa  110  4.0000000000000004e-24  Flavobacterium johnsoniae UW101  Bacteria  normal  0.551236  n/a   
 
 
-
 
NC_013501  Rmar_0873  Holliday junction resolvase YqgF  39.1 
 
 
145 aa  107  4.0000000000000004e-23  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_5430  Holliday junction resolvase YqgF  39.55 
 
 
142 aa  105  2e-22  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_0074  Holliday junction resolvase YqgF  39.1 
 
 
138 aa  104  4e-22  Pedobacter heparinus DSM 2366  Bacteria  normal  0.974882  normal 
 
 
-
 
NC_013162  Coch_1395  Holliday junction resolvase YqgF  36.76 
 
 
143 aa  102  2e-21  Capnocytophaga ochracea DSM 7271  Bacteria  normal  n/a   
 
 
-
 
NC_002950  PG2202  Holliday junction resolvase-like protein  35.34 
 
 
138 aa  99.8  1e-20  Porphyromonas gingivalis W83  Bacteria  n/a    normal 
 
 
-
 
NC_010830  Aasi_1327  Holliday junction resolvase-like protein  37.59 
 
 
141 aa  99.8  1e-20  Candidatus Amoebophilus asiaticus 5a2  Bacteria  n/a    normal  0.513618 
 
 
-
 
NC_014230  CA2559_06155  Holliday junction resolvase-like protein  38.17 
 
 
135 aa  98.2  4e-20  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_4051  Holliday junction resolvase YqgF  35.34 
 
 
137 aa  95.5  2e-19  Dyadobacter fermentans DSM 18053  Bacteria  normal  hitchhiker  0.00000789262 
 
 
-
 
NC_013522  Taci_1032  Holliday junction resolvase YqgF  35.82 
 
 
142 aa  94.4  5e-19  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_008255  CHU_0692  Holliday junction resolvase-like protein  31.16 
 
 
152 aa  89.4  1e-17  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.458381 
 
 
-
 
NC_011899  Hore_05800  Holliday junction resolvase YqgF  40.3 
 
 
140 aa  87.8  5e-17  Halothermothrix orenii H 168  Bacteria  normal  0.209228  n/a   
 
 
-
 
NC_009767  Rcas_3713  Holliday junction resolvase YqgF  33.57 
 
 
146 aa  85.5  2e-16  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0658941  hitchhiker  0.00476179 
 
 
-
 
NC_008346  Swol_0470  Holliday junction resolvase YqgF  40 
 
 
141 aa  83.6  9e-16  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  unclonable  0.00000000599692  n/a   
 
 
-
 
NC_011661  Dtur_1024  Holliday junction resolvase YqgF  32.35 
 
 
141 aa  79  0.00000000000002  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_1640  Holliday junction resolvase YqgF  32.37 
 
 
140 aa  79  0.00000000000002  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.278901  normal  0.163549 
 
 
-
 
NC_009523  RoseRS_3225  Holliday junction resolvase YqgF  30.88 
 
 
141 aa  78.6  0.00000000000002  Roseiflexus sp. RS-1  Bacteria  normal  0.387387  normal 
 
 
-
 
NC_013947  Snas_3877  Holliday junction resolvase YqgF  33.11 
 
 
151 aa  77.4  0.00000000000007  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.843962  normal 
 
 
-
 
NC_011831  Cagg_0094  Holliday junction resolvase YqgF  34.06 
 
 
142 aa  77  0.00000000000008  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.0018567  normal 
 
 
-
 
NC_013205  Aaci_2024  Holliday junction resolvase YqgF  32.61 
 
 
144 aa  77  0.00000000000009  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.330713  n/a   
 
 
-
 
NC_011145  AnaeK_2633  Holliday junction resolvase-like protein  35.29 
 
 
137 aa  76.6  0.0000000000001  Anaeromyxobacter sp. K  Bacteria  normal  0.854397  n/a   
 
 
-
 
NC_008009  Acid345_0556  Holliday junction resolvase YqgF  35.51 
 
 
153 aa  76.6  0.0000000000001  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.901255  normal  0.0480752 
 
 
-
 
NC_011891  A2cp1_2727  Holliday junction resolvase-like protein  35.29 
 
 
137 aa  76.3  0.0000000000002  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_0153  Holliday junction resolvase-like protein  33.33 
 
 
141 aa  74.7  0.0000000000003  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.0185653  n/a   
 
 
-
 
NC_010718  Nther_1778  Holliday junction resolvase YqgF  35.25 
 
 
141 aa  74.7  0.0000000000004  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal  0.140554 
 
 
-
 
NC_009675  Anae109_2535  Holliday junction resolvase-like protein  35.56 
 
 
137 aa  74.7  0.0000000000004  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.52249 
 
 
-
 
NC_009253  Dred_0775  Holliday junction resolvase YqgF  34.56 
 
 
137 aa  74.3  0.0000000000005  Desulfotomaculum reducens MI-1  Bacteria  unclonable  0.00000000463594  n/a   
 
 
-
 
NC_011898  Ccel_2239  Holliday junction resolvase-like protein  33.82 
 
 
142 aa  74.3  0.0000000000005  Clostridium cellulolyticum H10  Bacteria  decreased coverage  0.0000140275  n/a   
 
 
-
 
NC_011830  Dhaf_3562  Holliday junction resolvase-like protein  35.34 
 
 
142 aa  73.9  0.0000000000007  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000000000000329746  n/a   
 
 
-
 
NC_007760  Adeh_1232  Holliday junction resolvase-like protein  34.56 
 
 
137 aa  73.6  0.000000000001  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_2265  Holliday junction resolvase YqgF  33.09 
 
 
139 aa  72.4  0.000000000002  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  hitchhiker  0.0000233904 
 
 
-
 
NC_013165  Shel_07810  conserved hypothetical protein TIGR00250  29.5 
 
 
138 aa  71.2  0.000000000004  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal  0.0182311 
 
 
-
 
NC_010320  Teth514_1491  Holliday junction resolvase-like protein  37.14 
 
 
139 aa  71.2  0.000000000005  Thermoanaerobacter sp. X514  Bacteria  unclonable  0.0000000000748947  n/a   
 
 
-
 
NC_010655  Amuc_1191  Holliday junction resolvase YqgF  32.09 
 
 
141 aa  70.9  0.000000000006  Akkermansia muciniphila ATCC BAA-835  Bacteria  hitchhiker  0.0000237997  normal 
 
 
-
 
NC_013203  Apar_0458  Holliday junction resolvase YqgF  33.09 
 
 
140 aa  70.5  0.000000000007  Atopobium parvulum DSM 20469  Bacteria  normal  normal 
 
 
-
 
NC_013204  Elen_2554  Holliday junction resolvase YqgF  32.86 
 
 
138 aa  70.5  0.000000000008  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_008261  CPF_2031  Holliday junction resolvase-like protein  33.33 
 
 
137 aa  70.1  0.000000000009  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_1748  Holliday junction resolvase-like protein  33.33 
 
 
137 aa  70.1  0.000000000009  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_006055  Mfl464  Holliday junction resolvase  32.14 
 
 
142 aa  68.9  0.00000000002  Mesoplasma florum L1  Bacteria  normal  0.564085  n/a   
 
 
-
 
NC_010622  Bphy_2326  Holliday junction resolvase-like protein  33.58 
 
 
151 aa  68.6  0.00000000002  Burkholderia phymatum STM815  Bacteria  normal  normal  0.0635951 
 
 
-
 
NC_011206  Lferr_2668  Holliday junction resolvase YqgF  35.25 
 
 
143 aa  68.6  0.00000000003  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.933138  normal 
 
 
-
 
NC_007298  Daro_3892  Holliday junction resolvase-like protein  34.07 
 
 
146 aa  68.6  0.00000000003  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_014212  Mesil_0224  Holliday junction resolvase YqgF  32.12 
 
 
135 aa  68.6  0.00000000003  Meiothermus silvanus DSM 9946  Bacteria  normal  0.776353  normal  0.0108713 
 
 
-
 
NC_011761  AFE_3061  hypothetical protein  35.25 
 
 
143 aa  68.6  0.00000000003  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_008530  LGAS_0423  Holliday junction resolvase-like protein  30.94 
 
 
143 aa  68.6  0.00000000003  Lactobacillus gasseri ATCC 33323  Bacteria  normal  normal 
 
 
-
 
NC_012793  GWCH70_2488  Holliday junction resolvase YqgF  33.33 
 
 
138 aa  67.8  0.00000000005  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.0000000680199  n/a   
 
 
-
 
NC_008254  Meso_1361  Holliday junction resolvase YqgF  35.61 
 
 
160 aa  67.4  0.00000000006  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_2100  Holliday junction resolvase-like protein  32.09 
 
 
146 aa  67.4  0.00000000007  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_1829  Holliday junction resolvase YqgF  29.5 
 
 
153 aa  67  0.00000000008  Salinispora tropica CNB-440  Bacteria  normal  0.0551936  normal 
 
 
-
 
NC_009513  Lreu_0535  Holliday junction resolvase-like protein  27.86 
 
 
147 aa  67  0.00000000009  Lactobacillus reuteri DSM 20016  Bacteria  hitchhiker  0.00000331559  n/a   
 
 
-
 
NC_008048  Sala_0925  Holliday junction resolvase YqgF  32.59 
 
 
152 aa  66.6  0.0000000001  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.233016  normal 
 
 
-
 
NC_013411  GYMC61_0964  Holliday junction resolvase YqgF  31.88 
 
 
138 aa  66.6  0.0000000001  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013171  Apre_0938  Holliday junction resolvase YqgF  31.21 
 
 
139 aa  66.6  0.0000000001  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_1768  Holliday junction resolvase-like protein  31.65 
 
 
158 aa  65.9  0.0000000002  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_5401  Holliday junction resolvase YqgF  31.16 
 
 
139 aa  65.9  0.0000000002  Haliangium ochraceum DSM 14365  Bacteria  normal  0.616966  normal  0.68966 
 
 
-
 
CP001509  ECD_02779  Holliday junction resolvase-like protein  33.33 
 
 
138 aa  65.1  0.0000000003  Escherichia coli BL21(DE3)  Bacteria  normal  0.358182  n/a   
 
 
-
 
CP001637  EcDH1_0746  Holliday junction resolvase YqgF  33.33 
 
 
138 aa  65.1  0.0000000003  Escherichia coli DH1  Bacteria  normal  0.61838  n/a   
 
 
-
 
NC_011094  SeSA_A3271  Holliday junction resolvase-like protein  33.33 
 
 
138 aa  65.1  0.0000000003  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal  0.0744312 
 
 
-
 
NC_011080  SNSL254_A3344  Holliday junction resolvase-like protein  33.33 
 
 
138 aa  65.1  0.0000000003  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.130119  normal  0.247443 
 
 
-
 
NC_011083  SeHA_C3336  Holliday junction resolvase-like protein  33.33 
 
 
138 aa  65.1  0.0000000003  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.392173 
 
 
-
 
NC_010468  EcolC_0765  Holliday junction resolvase-like protein  33.33 
 
 
138 aa  65.1  0.0000000003  Escherichia coli ATCC 8739  Bacteria  normal  0.809741  hitchhiker  0.0000191582 
 
 
-
 
NC_012892  B21_02742  hypothetical protein  33.33 
 
 
138 aa  65.1  0.0000000003  Escherichia coli BL21  Bacteria  normal  0.395069  n/a   
 
 
-
 
NC_011149  SeAg_B3260  Holliday junction resolvase-like protein  33.33 
 
 
138 aa  65.1  0.0000000003  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.254908  n/a   
 
 
-
 
NC_008528  OEOE_1165  RNase H-like ribonuclease  32.41 
 
 
144 aa  65.1  0.0000000003  Oenococcus oeni PSU-1  Bacteria  normal  0.345189  n/a   
 
 
-
 
NC_009800  EcHS_A3107  Holliday junction resolvase-like protein  33.33 
 
 
138 aa  65.1  0.0000000003  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_1820  Holliday junction resolvase YqgF  29.5 
 
 
153 aa  64.7  0.0000000004  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.0000610168 
 
 
-
 
NC_013173  Dbac_1790  Holliday junction resolvase YqgF  32.85 
 
 
133 aa  64.7  0.0000000004  Desulfomicrobium baculatum DSM 4028  Bacteria  decreased coverage  0.00751815  n/a   
 
 
-
 
NC_008578  Acel_1329  Holliday junction resolvase YqgF  29.1 
 
 
173 aa  64.7  0.0000000004  Acidothermus cellulolyticus 11B  Bacteria  normal  0.0531797  normal  0.27422 
 
 
-
 
NC_011353  ECH74115_4252  Holliday junction resolvase-like protein  32.59 
 
 
138 aa  64.3  0.0000000005  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.367892  normal  0.370097 
 
 
-
 
NC_004311  BRA0597  Holliday junction resolvase-like protein  32.37 
 
 
162 aa  64.3  0.0000000006  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E3381  Holliday junction resolvase-like protein  32.59 
 
 
138 aa  63.9  0.0000000006  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_3091  Holliday junction resolvase-like protein  32.59 
 
 
138 aa  63.9  0.0000000006  Escherichia coli SMS-3-5  Bacteria  normal  0.372008  decreased coverage  0.00000514809 
 
 
-
 
NC_009801  EcE24377A_3292  Holliday junction resolvase-like protein  32.59 
 
 
138 aa  63.9  0.0000000006  Escherichia coli E24377A  Bacteria  normal  0.684819  n/a   
 
 
-
 
NC_010184  BcerKBAB4_4233  Holliday junction resolvase-like protein  33.1 
 
 
137 aa  63.9  0.0000000007  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.000272031  n/a   
 
 
-
 
NC_011772  BCG9842_B0730  Holliday junction resolvase-like protein  33.1 
 
 
137 aa  63.9  0.0000000007  Bacillus cereus G9842  Bacteria  decreased coverage  0.0000000542239  normal 
 
 
-
 
NC_009636  Smed_0941  Holliday junction resolvase-like protein  32.37 
 
 
165 aa  63.9  0.0000000007  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.22726 
 
 
-
 
NC_010730  SYO3AOP1_0474  Holliday junction resolvase YqgF  33.09 
 
 
145 aa  63.5  0.0000000009  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  hitchhiker  0.00800439  n/a   
 
 
-
 
NC_003909  BCE_4469  Holliday junction resolvase-like protein  33.1 
 
 
137 aa  63.2  0.000000001  Bacillus cereus ATCC 10987  Bacteria  decreased coverage  0.000000240455  n/a   
 
 
-
 
NC_011901  Tgr7_2911  Holliday junction resolvase YqgF  30.56 
 
 
163 aa  63.5  0.000000001  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.816073  n/a   
 
 
-
 
NC_005945  BAS4282  Holliday junction resolvase-like protein  33.1 
 
 
137 aa  63.2  0.000000001  Bacillus anthracis str. Sterne  Bacteria  hitchhiker  0.000000036093  n/a   
 
 
-
 
NC_005957  BT9727_4119  Holliday junction resolvase-like protein  33.1 
 
 
137 aa  63.2  0.000000001  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  decreased coverage  3.61572e-18  n/a   
 
 
-
 
NC_006274  BCZK4130  Holliday junction resolvase-like protein  33.1 
 
 
137 aa  63.2  0.000000001  Bacillus cereus E33L  Bacteria  unclonable  0.000000000000238321  n/a   
 
 
-
 
NC_011725  BCB4264_A4506  Holliday junction resolvase-like protein  33.33 
 
 
137 aa  63.2  0.000000001  Bacillus cereus B4264  Bacteria  normal  0.860088  n/a   
 
 
-
 
NC_010084  Bmul_2523  Holliday junction resolvase-like protein  32.09 
 
 
149 aa  63.2  0.000000001  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.159244 
 
 
-
 
NC_007413  Ava_3804  Holliday junction resolvase-like protein  30.83 
 
 
151 aa  63.2  0.000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0796335  normal 
 
 
-
 
NC_007530  GBAA_4614  Holliday junction resolvase-like protein  33.1 
 
 
137 aa  63.2  0.000000001  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  decreased coverage  0.0000000000846091  n/a   
 
 
-
 
NC_011773  BCAH820_4466  Holliday junction resolvase-like protein  33.1 
 
 
137 aa  63.2  0.000000001  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.0000283196 
 
 
-
 
NC_011205  SeD_A3440  Holliday junction resolvase-like protein  32.59 
 
 
138 aa  62.8  0.000000001  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  hitchhiker  0.00956364 
 
 
-
 
NC_007951  Bxe_A3810  Holliday junction resolvase-like protein  33.58 
 
 
146 aa  63.2  0.000000001  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_3353  Holliday junction resolvase-like protein  32.59 
 
 
138 aa  63.2  0.000000001  Enterobacter sp. 638  Bacteria  normal  0.2584  decreased coverage  0.0020385 
 
 
-
 
NC_011658  BCAH187_A4519  Holliday junction resolvase-like protein  33.33 
 
 
137 aa  63.2  0.000000001  Bacillus cereus AH187  Bacteria  hitchhiker  0.000203205  n/a   
 
 
-
 
NC_010511  M446_4344  Holliday junction resolvase YqgF  32.37 
 
 
168 aa  62.8  0.000000002  Methylobacterium sp. 4-46  Bacteria  normal  0.892789  normal  0.367855 
 
 
-
 
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