More than 300 homologs were found in PanDaTox collection
for query gene Coch_1395 on replicon NC_013162
Organism: Capnocytophaga ochracea DSM 7271



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013162  Coch_1395  Holliday junction resolvase YqgF  100 
 
 
143 aa  292  1e-78  Capnocytophaga ochracea DSM 7271  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_1903  Holliday junction resolvase YqgF  61.19 
 
 
136 aa  176  1e-43  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_2528  Holliday junction resolvase-like protein  61.94 
 
 
138 aa  174  5e-43  Flavobacterium johnsoniae UW101  Bacteria  normal  0.551236  n/a   
 
 
-
 
NC_014230  CA2559_06155  Holliday junction resolvase-like protein  63.36 
 
 
135 aa  166  7e-41  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_4051  Holliday junction resolvase YqgF  58.21 
 
 
137 aa  164  4e-40  Dyadobacter fermentans DSM 18053  Bacteria  normal  hitchhiker  0.00000789262 
 
 
-
 
NC_002950  PG2202  Holliday junction resolvase-like protein  57.25 
 
 
138 aa  158  2e-38  Porphyromonas gingivalis W83  Bacteria  n/a    normal 
 
 
-
 
NC_013730  Slin_5430  Holliday junction resolvase YqgF  55.73 
 
 
142 aa  155  2e-37  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_0692  Holliday junction resolvase-like protein  51.47 
 
 
152 aa  150  5.9999999999999996e-36  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.458381 
 
 
-
 
NC_013061  Phep_0074  Holliday junction resolvase YqgF  54.96 
 
 
138 aa  147  7e-35  Pedobacter heparinus DSM 2366  Bacteria  normal  0.974882  normal 
 
 
-
 
NC_010830  Aasi_1327  Holliday junction resolvase-like protein  49.28 
 
 
141 aa  142  2e-33  Candidatus Amoebophilus asiaticus 5a2  Bacteria  n/a    normal  0.513618 
 
 
-
 
NC_008639  Cpha266_2570  Holliday junction resolvase YqgF  41.98 
 
 
142 aa  116  9e-26  Chlorobium phaeobacteroides DSM 266  Bacteria  hitchhiker  0.00347975  n/a   
 
 
-
 
NC_013501  Rmar_0873  Holliday junction resolvase YqgF  38.93 
 
 
145 aa  103  1e-21  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_010831  Cphamn1_2429  Holliday junction resolvase YqgF  36.76 
 
 
144 aa  102  2e-21  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal 
 
 
-
 
NC_010803  Clim_2406  Holliday junction resolvase YqgF  35.82 
 
 
142 aa  98.6  3e-20  Chlorobium limicola DSM 245  Bacteria  normal  0.406379  n/a   
 
 
-
 
NC_011059  Paes_2162  Holliday junction resolvase YqgF  34.35 
 
 
142 aa  96.7  9e-20  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.337322  normal 
 
 
-
 
NC_007514  Cag_0014  Holliday junction resolvase YqgF  35.88 
 
 
140 aa  95.5  2e-19  Chlorobium chlorochromatii CaD3  Bacteria  normal  0.639301  n/a   
 
 
-
 
NC_011060  Ppha_2805  Holliday junction resolvase YqgF  35.04 
 
 
145 aa  94.4  5e-19  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_0556  Holliday junction resolvase YqgF  39.13 
 
 
153 aa  93.2  9e-19  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.901255  normal  0.0480752 
 
 
-
 
NC_007512  Plut_2047  Holliday junction resolvase YqgF  34.35 
 
 
141 aa  92.8  1e-18  Chlorobium luteolum DSM 273  Bacteria  normal  normal 
 
 
-
 
NC_007644  Moth_1640  Holliday junction resolvase YqgF  35.56 
 
 
140 aa  88.6  2e-17  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.278901  normal  0.163549 
 
 
-
 
NC_009513  Lreu_0535  Holliday junction resolvase-like protein  38.85 
 
 
147 aa  87  9e-17  Lactobacillus reuteri DSM 20016  Bacteria  hitchhiker  0.00000331559  n/a   
 
 
-
 
NC_010718  Nther_1778  Holliday junction resolvase YqgF  34.03 
 
 
141 aa  86.7  1e-16  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal  0.140554 
 
 
-
 
NC_009523  RoseRS_3225  Holliday junction resolvase YqgF  39.55 
 
 
141 aa  86.3  1e-16  Roseiflexus sp. RS-1  Bacteria  normal  0.387387  normal 
 
 
-
 
NC_009767  Rcas_3713  Holliday junction resolvase YqgF  37.5 
 
 
146 aa  85.5  2e-16  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0658941  hitchhiker  0.00476179 
 
 
-
 
NC_009012  Cthe_0153  Holliday junction resolvase-like protein  34.29 
 
 
141 aa  84.7  4e-16  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.0185653  n/a   
 
 
-
 
NC_008346  Swol_0470  Holliday junction resolvase YqgF  37.23 
 
 
141 aa  84.3  5e-16  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  unclonable  0.00000000599692  n/a   
 
 
-
 
NC_013411  GYMC61_0964  Holliday junction resolvase YqgF  34.31 
 
 
138 aa  78.6  0.00000000000002  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009253  Dred_0775  Holliday junction resolvase YqgF  32.37 
 
 
137 aa  79.3  0.00000000000002  Desulfotomaculum reducens MI-1  Bacteria  unclonable  0.00000000463594  n/a   
 
 
-
 
NC_008530  LGAS_0423  Holliday junction resolvase-like protein  34.06 
 
 
143 aa  77  0.00000000000009  Lactobacillus gasseri ATCC 33323  Bacteria  normal  normal 
 
 
-
 
NC_011898  Ccel_2239  Holliday junction resolvase-like protein  33.82 
 
 
142 aa  76.6  0.0000000000001  Clostridium cellulolyticum H10  Bacteria  decreased coverage  0.0000140275  n/a   
 
 
-
 
NC_013223  Dret_1130  Holliday junction resolvase YqgF  33.79 
 
 
142 aa  75.5  0.0000000000002  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_3098  Holliday junction resolvase-like protein  34.78 
 
 
151 aa  75.1  0.0000000000003  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_009972  Haur_3633  Holliday junction resolvase YqgF  36.3 
 
 
158 aa  75.1  0.0000000000003  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_008527  LACR_0138  Holliday junction resolvase-like protein  33.1 
 
 
143 aa  75.1  0.0000000000003  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_2031  Holliday junction resolvase-like protein  33.82 
 
 
137 aa  74.3  0.0000000000005  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_1748  Holliday junction resolvase-like protein  33.82 
 
 
137 aa  74.3  0.0000000000005  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_013515  Smon_0417  Holliday junction resolvase YqgF  33.83 
 
 
142 aa  72.8  0.000000000001  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_011661  Dtur_1024  Holliday junction resolvase YqgF  33.82 
 
 
141 aa  72.8  0.000000000001  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_05800  Holliday junction resolvase YqgF  30.88 
 
 
140 aa  72.8  0.000000000001  Halothermothrix orenii H 168  Bacteria  normal  0.209228  n/a   
 
 
-
 
NC_011831  Cagg_0094  Holliday junction resolvase YqgF  32.14 
 
 
142 aa  72.4  0.000000000002  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.0018567  normal 
 
 
-
 
NC_008528  OEOE_1165  RNase H-like ribonuclease  37.41 
 
 
144 aa  72  0.000000000002  Oenococcus oeni PSU-1  Bacteria  normal  0.345189  n/a   
 
 
-
 
NC_009428  Rsph17025_1879  Holliday junction resolvase-like protein  33.08 
 
 
160 aa  71.6  0.000000000003  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.620593  normal 
 
 
-
 
NC_012793  GWCH70_2488  Holliday junction resolvase YqgF  32.86 
 
 
138 aa  72  0.000000000003  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.0000000680199  n/a   
 
 
-
 
NC_013171  Apre_0938  Holliday junction resolvase YqgF  29.5 
 
 
139 aa  71.2  0.000000000004  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_3804  Holliday junction resolvase-like protein  33.8 
 
 
151 aa  70.9  0.000000000006  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0796335  normal 
 
 
-
 
NC_008532  STER_1938  Holliday junction resolvase-like protein  32.37 
 
 
139 aa  70.9  0.000000000006  Streptococcus thermophilus LMD-9  Bacteria  unclonable  0.0000000471473  n/a   
 
 
-
 
NC_010655  Amuc_1191  Holliday junction resolvase YqgF  30.53 
 
 
141 aa  70.5  0.000000000008  Akkermansia muciniphila ATCC BAA-835  Bacteria  hitchhiker  0.0000237997  normal 
 
 
-
 
NC_013757  Gobs_3157  Holliday junction resolvase YqgF  29.55 
 
 
222 aa  70.1  0.00000000001  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.588989  n/a   
 
 
-
 
NC_014248  Aazo_4148  Holliday junction resolvase YqgF  31.39 
 
 
158 aa  68.9  0.00000000002  'Nostoc azollae' 0708  Bacteria  normal  0.927535  n/a   
 
 
-
 
NC_009512  Pput_4870  Holliday junction resolvase-like protein  32.09 
 
 
141 aa  68.6  0.00000000003  Pseudomonas putida F1  Bacteria  normal  normal  0.0143218 
 
 
-
 
NC_002947  PP_4996  Holliday junction resolvase-like protein  32.09 
 
 
141 aa  68.6  0.00000000003  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_007519  Dde_0314  Holliday junction resolvase YqgF  31.62 
 
 
144 aa  68.6  0.00000000003  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_2100  Holliday junction resolvase-like protein  30.43 
 
 
146 aa  68.6  0.00000000003  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_5046  Holliday junction resolvase-like protein  32.09 
 
 
141 aa  68.6  0.00000000003  Pseudomonas putida GB-1  Bacteria  normal  0.433304  normal 
 
 
-
 
NC_011725  BCB4264_A4506  Holliday junction resolvase-like protein  30.99 
 
 
137 aa  67.8  0.00000000004  Bacillus cereus B4264  Bacteria  normal  0.860088  n/a   
 
 
-
 
NC_013161  Cyan8802_1969  Holliday junction resolvase-like protein  32.61 
 
 
139 aa  67.4  0.00000000006  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.0212683 
 
 
-
 
NC_003909  BCE_4469  Holliday junction resolvase-like protein  30.56 
 
 
137 aa  67.4  0.00000000006  Bacillus cereus ATCC 10987  Bacteria  decreased coverage  0.000000240455  n/a   
 
 
-
 
NC_004116  SAG2090  Holliday junction resolvase-like protein  33.58 
 
 
136 aa  67.4  0.00000000006  Streptococcus agalactiae 2603V/R  Bacteria  hitchhiker  0.000724166  n/a   
 
 
-
 
NC_005945  BAS4282  Holliday junction resolvase-like protein  30.56 
 
 
137 aa  67.4  0.00000000006  Bacillus anthracis str. Sterne  Bacteria  hitchhiker  0.000000036093  n/a   
 
 
-
 
NC_005957  BT9727_4119  Holliday junction resolvase-like protein  30.56 
 
 
137 aa  67.4  0.00000000006  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  decreased coverage  3.61572e-18  n/a   
 
 
-
 
NC_006274  BCZK4130  Holliday junction resolvase-like protein  30.56 
 
 
137 aa  67.4  0.00000000006  Bacillus cereus E33L  Bacteria  unclonable  0.000000000000238321  n/a   
 
 
-
 
NC_011773  BCAH820_4466  Holliday junction resolvase-like protein  30.56 
 
 
137 aa  67.4  0.00000000006  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.0000283196 
 
 
-
 
NC_007530  GBAA_4614  Holliday junction resolvase-like protein  30.56 
 
 
137 aa  67.4  0.00000000006  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  decreased coverage  0.0000000000846091  n/a   
 
 
-
 
NC_013173  Dbac_1790  Holliday junction resolvase YqgF  34.07 
 
 
133 aa  67.4  0.00000000006  Desulfomicrobium baculatum DSM 4028  Bacteria  decreased coverage  0.00751815  n/a   
 
 
-
 
NC_011726  PCC8801_1942  Holliday junction resolvase-like protein  32.61 
 
 
139 aa  67.4  0.00000000006  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011772  BCG9842_B0730  Holliday junction resolvase-like protein  30.56 
 
 
137 aa  67.4  0.00000000006  Bacillus cereus G9842  Bacteria  decreased coverage  0.0000000542239  normal 
 
 
-
 
NC_011658  BCAH187_A4519  Holliday junction resolvase-like protein  30.99 
 
 
137 aa  67.4  0.00000000006  Bacillus cereus AH187  Bacteria  hitchhiker  0.000203205  n/a   
 
 
-
 
NC_010320  Teth514_1491  Holliday junction resolvase-like protein  30.99 
 
 
139 aa  67.4  0.00000000007  Thermoanaerobacter sp. X514  Bacteria  unclonable  0.0000000000748947  n/a   
 
 
-
 
NC_008312  Tery_4379  Holliday junction resolvase-like protein  31.11 
 
 
149 aa  67.4  0.00000000007  Trichodesmium erythraeum IMS101  Bacteria  normal  0.556882  normal  0.251804 
 
 
-
 
NC_011830  Dhaf_3562  Holliday junction resolvase-like protein  29.85 
 
 
142 aa  66.6  0.00000000009  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000000000000329746  n/a   
 
 
-
 
NC_013889  TK90_2407  Holliday junction resolvase YqgF  31.34 
 
 
130 aa  66.6  0.00000000009  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.664688  normal  0.90932 
 
 
-
 
NC_013947  Snas_3877  Holliday junction resolvase YqgF  30.22 
 
 
151 aa  67  0.00000000009  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.843962  normal 
 
 
-
 
NC_008751  Dvul_0307  Holliday junction resolvase YqgF  32.35 
 
 
142 aa  67  0.00000000009  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_002620  TC0456  Holliday junction resolvase-like protein  34.78 
 
 
148 aa  66.2  0.0000000001  Chlamydia muridarum Nigg  Bacteria  normal  0.0531997  n/a   
 
 
-
 
NC_008148  Rxyl_1360  Holliday junction resolvase YqgF  30.53 
 
 
139 aa  66.2  0.0000000001  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0122615  n/a   
 
 
-
 
NC_010501  PputW619_0468  Holliday junction resolvase-like protein  31.34 
 
 
141 aa  66.2  0.0000000001  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_2514  Holliday junction resolvase-like protein  34.81 
 
 
150 aa  65.9  0.0000000002  Cyanothece sp. PCC 7425  Bacteria  normal  0.36708  normal 
 
 
-
 
NC_013739  Cwoe_3035  Holliday junction resolvase YqgF  35.92 
 
 
133 aa  65.9  0.0000000002  Conexibacter woesei DSM 14684  Bacteria  normal  0.0101605  normal  0.0662243 
 
 
-
 
NC_009674  Bcer98_3099  Holliday junction resolvase-like protein  29.86 
 
 
137 aa  65.9  0.0000000002  Bacillus cytotoxicus NVH 391-98  Bacteria  hitchhiker  0.00212776  n/a   
 
 
-
 
NC_011883  Ddes_0031  Holliday junction resolvase YqgF  31.34 
 
 
140 aa  65.5  0.0000000003  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_4233  Holliday junction resolvase-like protein  29.86 
 
 
137 aa  65.1  0.0000000003  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.000272031  n/a   
 
 
-
 
NC_007493  RSP_2684  Holliday junction resolvase-like protein  31.58 
 
 
160 aa  65.1  0.0000000003  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.173322  n/a   
 
 
-
 
NC_009049  Rsph17029_1342  Holliday junction resolvase-like protein  31.58 
 
 
160 aa  65.1  0.0000000003  Rhodobacter sphaeroides ATCC 17029  Bacteria  decreased coverage  0.00888056  normal  0.184568 
 
 
-
 
NC_008531  LEUM_0558  Holliday junction resolvase-like protein  30.28 
 
 
143 aa  65.1  0.0000000003  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_3762  Holliday junction resolvase YqgF  32.37 
 
 
175 aa  64.7  0.0000000004  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.454353 
 
 
-
 
NC_013203  Apar_0458  Holliday junction resolvase YqgF  29.37 
 
 
140 aa  64.7  0.0000000004  Atopobium parvulum DSM 20469  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_2580  Holliday junction resolvase-like protein  33.09 
 
 
145 aa  64.3  0.0000000005  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.0863234 
 
 
-
 
NC_002976  SERP1180  Holliday junction resolvase-like protein  33.58 
 
 
142 aa  64.3  0.0000000006  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_0484  Holliday junction resolvase-like protein  32.84 
 
 
146 aa  64.3  0.0000000006  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_5038  hypothetical protein  32.84 
 
 
146 aa  63.9  0.0000000007  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_2297  Holliday junction resolvase YqgF  29.25 
 
 
150 aa  63.9  0.0000000007  Clostridium phytofermentans ISDg  Bacteria  normal  0.470334  n/a   
 
 
-
 
NC_009953  Sare_1820  Holliday junction resolvase YqgF  27.34 
 
 
153 aa  63.5  0.0000000008  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.0000610168 
 
 
-
 
NC_013441  Gbro_2321  Holliday junction resolvase YqgF  28.87 
 
 
143 aa  63.9  0.0000000008  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_2668  Holliday junction resolvase YqgF  30.88 
 
 
143 aa  63.9  0.0000000008  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.933138  normal 
 
 
-
 
NC_011761  AFE_3061  hypothetical protein  30.88 
 
 
143 aa  63.9  0.0000000008  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_1211  Holliday junction resolvase YqgF  32.85 
 
 
138 aa  62.8  0.000000001  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.271637  n/a   
 
 
-
 
NC_007492  Pfl01_5312  Holliday junction resolvase-like protein  31.34 
 
 
145 aa  63.5  0.000000001  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.0190801  normal  0.217295 
 
 
-
 
NC_013205  Aaci_2024  Holliday junction resolvase YqgF  25.93 
 
 
144 aa  63.5  0.000000001  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.330713  n/a   
 
 
-
 
NC_010571  Oter_3530  Holliday junction resolvase YqgF  32.62 
 
 
145 aa  62.8  0.000000001  Opitutus terrae PB90-1  Bacteria  normal  0.390146  normal 
 
 
-
 
NC_008578  Acel_1329  Holliday junction resolvase YqgF  28.99 
 
 
173 aa  63.5  0.000000001  Acidothermus cellulolyticus 11B  Bacteria  normal  0.0531797  normal  0.27422 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>