More than 300 homologs were found in PanDaTox collection
for query gene Clim_2406 on replicon NC_010803
Organism: Chlorobium limicola DSM 245



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010803  Clim_2406  Holliday junction resolvase YqgF  100 
 
 
142 aa  287  3e-77  Chlorobium limicola DSM 245  Bacteria  normal  0.406379  n/a   
 
 
-
 
NC_008639  Cpha266_2570  Holliday junction resolvase YqgF  65.49 
 
 
142 aa  196  1.0000000000000001e-49  Chlorobium phaeobacteroides DSM 266  Bacteria  hitchhiker  0.00347975  n/a   
 
 
-
 
NC_011060  Ppha_2805  Holliday junction resolvase YqgF  61.15 
 
 
145 aa  176  1e-43  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_007514  Cag_0014  Holliday junction resolvase YqgF  61.03 
 
 
140 aa  174  3e-43  Chlorobium chlorochromatii CaD3  Bacteria  normal  0.639301  n/a   
 
 
-
 
NC_011059  Paes_2162  Holliday junction resolvase YqgF  53.96 
 
 
142 aa  162  2.0000000000000002e-39  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.337322  normal 
 
 
-
 
NC_010831  Cphamn1_2429  Holliday junction resolvase YqgF  54.89 
 
 
144 aa  160  5.0000000000000005e-39  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal 
 
 
-
 
NC_007512  Plut_2047  Holliday junction resolvase YqgF  57.66 
 
 
141 aa  155  1e-37  Chlorobium luteolum DSM 273  Bacteria  normal  normal 
 
 
-
 
NC_013501  Rmar_0873  Holliday junction resolvase YqgF  39.55 
 
 
145 aa  105  2e-22  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_1903  Holliday junction resolvase YqgF  39.55 
 
 
136 aa  100  5e-21  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013162  Coch_1395  Holliday junction resolvase YqgF  35.82 
 
 
143 aa  98.6  3e-20  Capnocytophaga ochracea DSM 7271  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_2528  Holliday junction resolvase-like protein  34.07 
 
 
138 aa  94.4  4e-19  Flavobacterium johnsoniae UW101  Bacteria  normal  0.551236  n/a   
 
 
-
 
NC_013730  Slin_5430  Holliday junction resolvase YqgF  36.3 
 
 
142 aa  93.2  1e-18  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_0074  Holliday junction resolvase YqgF  33.33 
 
 
138 aa  91.3  4e-18  Pedobacter heparinus DSM 2366  Bacteria  normal  0.974882  normal 
 
 
-
 
NC_013037  Dfer_4051  Holliday junction resolvase YqgF  33.33 
 
 
137 aa  90.9  6e-18  Dyadobacter fermentans DSM 18053  Bacteria  normal  hitchhiker  0.00000789262 
 
 
-
 
NC_013205  Aaci_2024  Holliday junction resolvase YqgF  39.71 
 
 
144 aa  89.7  1e-17  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.330713  n/a   
 
 
-
 
NC_014230  CA2559_06155  Holliday junction resolvase-like protein  37.4 
 
 
135 aa  88.6  2e-17  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_010830  Aasi_1327  Holliday junction resolvase-like protein  33.33 
 
 
141 aa  88.2  3e-17  Candidatus Amoebophilus asiaticus 5a2  Bacteria  n/a    normal  0.513618 
 
 
-
 
NC_008255  CHU_0692  Holliday junction resolvase-like protein  31.85 
 
 
152 aa  85.9  2e-16  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.458381 
 
 
-
 
NC_002950  PG2202  Holliday junction resolvase-like protein  33.33 
 
 
138 aa  81.6  0.000000000000003  Porphyromonas gingivalis W83  Bacteria  n/a    normal 
 
 
-
 
NC_009767  Rcas_3713  Holliday junction resolvase YqgF  31.03 
 
 
146 aa  77.8  0.00000000000005  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0658941  hitchhiker  0.00476179 
 
 
-
 
NC_011830  Dhaf_3562  Holliday junction resolvase-like protein  38.97 
 
 
142 aa  76.6  0.00000000000009  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000000000000329746  n/a   
 
 
-
 
NC_010718  Nther_1778  Holliday junction resolvase YqgF  38.52 
 
 
141 aa  77  0.00000000000009  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal  0.140554 
 
 
-
 
NC_011661  Dtur_1024  Holliday junction resolvase YqgF  33.09 
 
 
141 aa  75.5  0.0000000000002  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_010655  Amuc_1191  Holliday junction resolvase YqgF  31.43 
 
 
141 aa  75.9  0.0000000000002  Akkermansia muciniphila ATCC BAA-835  Bacteria  hitchhiker  0.0000237997  normal 
 
 
-
 
NC_013515  Smon_0417  Holliday junction resolvase YqgF  32.14 
 
 
142 aa  74.3  0.0000000000005  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_007760  Adeh_1232  Holliday junction resolvase-like protein  37.96 
 
 
137 aa  73.6  0.0000000000009  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_2633  Holliday junction resolvase-like protein  37.96 
 
 
137 aa  73.6  0.0000000000009  Anaeromyxobacter sp. K  Bacteria  normal  0.854397  n/a   
 
 
-
 
NC_014248  Aazo_4148  Holliday junction resolvase YqgF  34.81 
 
 
158 aa  73.2  0.000000000001  'Nostoc azollae' 0708  Bacteria  normal  0.927535  n/a   
 
 
-
 
NC_013595  Sros_6093  endonuclease involved in recombination-like protein  35.82 
 
 
163 aa  72.8  0.000000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0746227  normal 
 
 
-
 
NC_011891  A2cp1_2727  Holliday junction resolvase-like protein  37.96 
 
 
137 aa  73.2  0.000000000001  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_2488  Holliday junction resolvase YqgF  36.43 
 
 
138 aa  72.4  0.000000000002  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.0000000680199  n/a   
 
 
-
 
NC_009523  RoseRS_3225  Holliday junction resolvase YqgF  30.28 
 
 
141 aa  72.4  0.000000000002  Roseiflexus sp. RS-1  Bacteria  normal  0.387387  normal 
 
 
-
 
NC_010622  Bphy_2326  Holliday junction resolvase-like protein  35.25 
 
 
151 aa  72  0.000000000003  Burkholderia phymatum STM815  Bacteria  normal  normal  0.0635951 
 
 
-
 
NC_013216  Dtox_2265  Holliday junction resolvase YqgF  37.68 
 
 
139 aa  71.6  0.000000000003  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  hitchhiker  0.0000233904 
 
 
-
 
NC_013411  GYMC61_0964  Holliday junction resolvase YqgF  36.43 
 
 
138 aa  70.9  0.000000000006  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013385  Adeg_1438  Holliday junction resolvase YqgF  35.51 
 
 
146 aa  70.5  0.000000000008  Ammonifex degensii KC4  Bacteria  normal  0.0335959  n/a   
 
 
-
 
NC_013517  Sterm_2739  Holliday junction resolvase YqgF  29.93 
 
 
137 aa  70.1  0.000000000009  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A3810  Holliday junction resolvase-like protein  35.62 
 
 
146 aa  69.7  0.00000000001  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008312  Tery_4379  Holliday junction resolvase-like protein  34.27 
 
 
149 aa  69.7  0.00000000001  Trichodesmium erythraeum IMS101  Bacteria  normal  0.556882  normal  0.251804 
 
 
-
 
NC_011761  AFE_3061  hypothetical protein  34.53 
 
 
143 aa  68.9  0.00000000002  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_013522  Taci_1032  Holliday junction resolvase YqgF  30.71 
 
 
142 aa  68.9  0.00000000002  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_3804  Holliday junction resolvase-like protein  33.82 
 
 
151 aa  69.3  0.00000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0796335  normal 
 
 
-
 
NC_007510  Bcep18194_A3963  Holliday junction resolvase-like protein  36.11 
 
 
149 aa  68.9  0.00000000002  Burkholderia sp. 383  Bacteria  normal  normal  0.539384 
 
 
-
 
NC_010084  Bmul_2523  Holliday junction resolvase-like protein  36.11 
 
 
149 aa  69.3  0.00000000002  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.159244 
 
 
-
 
NC_008346  Swol_0470  Holliday junction resolvase YqgF  35.29 
 
 
141 aa  68.9  0.00000000002  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  unclonable  0.00000000599692  n/a   
 
 
-
 
NC_011206  Lferr_2668  Holliday junction resolvase YqgF  34.53 
 
 
143 aa  68.9  0.00000000002  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.933138  normal 
 
 
-
 
NC_011729  PCC7424_3098  Holliday junction resolvase-like protein  33.09 
 
 
151 aa  68.2  0.00000000003  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_008060  Bcen_0383  Holliday junction resolvase-like protein  36.11 
 
 
149 aa  68.6  0.00000000003  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_0836  Holliday junction resolvase-like protein  36.11 
 
 
149 aa  68.6  0.00000000003  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.311364  hitchhiker  0.00221177 
 
 
-
 
NC_008542  Bcen2424_0865  Holliday junction resolvase-like protein  36.11 
 
 
149 aa  68.6  0.00000000003  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_0869  Holliday junction resolvase-like protein  36.3 
 
 
146 aa  68.2  0.00000000004  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.0747835 
 
 
-
 
NC_010551  BamMC406_0755  Holliday junction resolvase-like protein  35.42 
 
 
149 aa  67.8  0.00000000005  Burkholderia ambifaria MC40-6  Bacteria  normal  0.302865  normal  0.26532 
 
 
-
 
NC_008390  Bamb_0738  Holliday junction resolvase-like protein  35.42 
 
 
149 aa  67.8  0.00000000005  Burkholderia ambifaria AMMD  Bacteria  normal  0.89107  n/a   
 
 
-
 
NC_007298  Daro_3892  Holliday junction resolvase-like protein  32.59 
 
 
146 aa  67.4  0.00000000006  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_0775  Holliday junction resolvase YqgF  35.29 
 
 
137 aa  67.4  0.00000000006  Desulfotomaculum reducens MI-1  Bacteria  unclonable  0.00000000463594  n/a   
 
 
-
 
NC_009675  Anae109_2535  Holliday junction resolvase-like protein  35.77 
 
 
137 aa  67  0.00000000009  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.52249 
 
 
-
 
NC_007644  Moth_1640  Holliday junction resolvase YqgF  34.81 
 
 
140 aa  67  0.00000000009  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.278901  normal  0.163549 
 
 
-
 
NC_010184  BcerKBAB4_4233  Holliday junction resolvase-like protein  33.81 
 
 
137 aa  66.6  0.0000000001  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.000272031  n/a   
 
 
-
 
NC_011831  Cagg_0094  Holliday junction resolvase YqgF  34.29 
 
 
142 aa  66.2  0.0000000001  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.0018567  normal 
 
 
-
 
NC_013757  Gobs_3157  Holliday junction resolvase YqgF  36.5 
 
 
222 aa  66.2  0.0000000001  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.588989  n/a   
 
 
-
 
NC_008836  BMA10229_A2747  Holliday junction resolvase-like protein  36.17 
 
 
146 aa  65.9  0.0000000002  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_1858  Holliday junction resolvase-like protein  36.17 
 
 
146 aa  65.9  0.0000000002  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_4469  Holliday junction resolvase-like protein  33.81 
 
 
137 aa  65.9  0.0000000002  Bacillus cereus ATCC 10987  Bacteria  decreased coverage  0.000000240455  n/a   
 
 
-
 
NC_005945  BAS4282  Holliday junction resolvase-like protein  33.81 
 
 
137 aa  65.9  0.0000000002  Bacillus anthracis str. Sterne  Bacteria  hitchhiker  0.000000036093  n/a   
 
 
-
 
NC_005957  BT9727_4119  Holliday junction resolvase-like protein  33.81 
 
 
137 aa  65.9  0.0000000002  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  decreased coverage  3.61572e-18  n/a   
 
 
-
 
NC_006274  BCZK4130  Holliday junction resolvase-like protein  33.81 
 
 
137 aa  65.9  0.0000000002  Bacillus cereus E33L  Bacteria  unclonable  0.000000000000238321  n/a   
 
 
-
 
NC_006348  BMA1996  Holliday junction resolvase-like protein  36.17 
 
 
146 aa  65.9  0.0000000002  Burkholderia mallei ATCC 23344  Bacteria  normal  0.391575  n/a   
 
 
-
 
NC_008785  BMASAVP1_A0917  Holliday junction resolvase-like protein  36.17 
 
 
146 aa  65.9  0.0000000002  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_4466  Holliday junction resolvase-like protein  33.81 
 
 
137 aa  65.9  0.0000000002  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.0000283196 
 
 
-
 
NC_007434  BURPS1710b_3169  Holliday junction resolvase-like protein  36.17 
 
 
146 aa  65.9  0.0000000002  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_3111  Holliday junction resolvase-like protein  36.17 
 
 
146 aa  65.9  0.0000000002  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_4614  Holliday junction resolvase-like protein  33.81 
 
 
137 aa  65.9  0.0000000002  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  decreased coverage  0.0000000000846091  n/a   
 
 
-
 
NC_008009  Acid345_0556  Holliday junction resolvase YqgF  37.59 
 
 
153 aa  65.9  0.0000000002  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.901255  normal  0.0480752 
 
 
-
 
NC_009076  BURPS1106A_3147  Holliday junction resolvase-like protein  36.17 
 
 
146 aa  65.9  0.0000000002  Burkholderia pseudomallei 1106a  Bacteria  normal  0.822464  n/a   
 
 
-
 
NC_009674  Bcer98_3099  Holliday junction resolvase-like protein  34.53 
 
 
137 aa  65.9  0.0000000002  Bacillus cytotoxicus NVH 391-98  Bacteria  hitchhiker  0.00212776  n/a   
 
 
-
 
NC_013525  Tter_0088  Holliday junction resolvase YqgF  35.46 
 
 
149 aa  66.2  0.0000000002  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_011898  Ccel_2239  Holliday junction resolvase-like protein  31.39 
 
 
142 aa  65.5  0.0000000003  Clostridium cellulolyticum H10  Bacteria  decreased coverage  0.0000140275  n/a   
 
 
-
 
NC_011772  BCG9842_B0730  Holliday junction resolvase-like protein  33.81 
 
 
137 aa  65.5  0.0000000003  Bacillus cereus G9842  Bacteria  decreased coverage  0.0000000542239  normal 
 
 
-
 
NC_010320  Teth514_1491  Holliday junction resolvase-like protein  33.81 
 
 
139 aa  65.1  0.0000000003  Thermoanaerobacter sp. X514  Bacteria  unclonable  0.0000000000748947  n/a   
 
 
-
 
NC_007651  BTH_I1463  Holliday junction resolvase-like protein  35.46 
 
 
146 aa  64.7  0.0000000004  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_1942  Holliday junction resolvase-like protein  32.35 
 
 
139 aa  64.3  0.0000000005  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_1969  Holliday junction resolvase-like protein  32.35 
 
 
139 aa  64.3  0.0000000005  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.0212683 
 
 
-
 
NC_011658  BCAH187_A4519  Holliday junction resolvase-like protein  34.31 
 
 
137 aa  64.3  0.0000000005  Bacillus cereus AH187  Bacteria  hitchhiker  0.000203205  n/a   
 
 
-
 
NC_012034  Athe_1211  Holliday junction resolvase YqgF  30.66 
 
 
138 aa  64.3  0.0000000006  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.271637  n/a   
 
 
-
 
NC_007947  Mfla_2100  Holliday junction resolvase-like protein  35.46 
 
 
146 aa  63.9  0.0000000007  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_013223  Dret_1130  Holliday junction resolvase YqgF  35.07 
 
 
142 aa  63.5  0.0000000008  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_009379  Pnuc_0244  Holliday junction resolvase-like protein  28.78 
 
 
138 aa  63.9  0.0000000008  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  0.535412  n/a   
 
 
-
 
NC_011899  Hore_05800  Holliday junction resolvase YqgF  34.81 
 
 
140 aa  63.5  0.0000000009  Halothermothrix orenii H 168  Bacteria  normal  0.209228  n/a   
 
 
-
 
NC_013204  Elen_2554  Holliday junction resolvase YqgF  30.43 
 
 
138 aa  63.5  0.0000000009  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_1819  Holliday junction resolvase YqgF  34.04 
 
 
190 aa  63.2  0.000000001  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0503115  normal 
 
 
-
 
NC_011725  BCB4264_A4506  Holliday junction resolvase-like protein  34.31 
 
 
137 aa  63.5  0.000000001  Bacillus cereus B4264  Bacteria  normal  0.860088  n/a   
 
 
-
 
NC_008048  Sala_0925  Holliday junction resolvase YqgF  33.57 
 
 
152 aa  63.2  0.000000001  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.233016  normal 
 
 
-
 
NC_010001  Cphy_2297  Holliday junction resolvase YqgF  31.88 
 
 
150 aa  63.5  0.000000001  Clostridium phytofermentans ISDg  Bacteria  normal  0.470334  n/a   
 
 
-
 
NC_013173  Dbac_1790  Holliday junction resolvase YqgF  35.56 
 
 
133 aa  62.8  0.000000002  Desulfomicrobium baculatum DSM 4028  Bacteria  decreased coverage  0.00751815  n/a   
 
 
-
 
NC_009484  Acry_0873  Holliday junction resolvase YqgF  32.62 
 
 
158 aa  62.8  0.000000002  Acidiphilium cryptum JF-5  Bacteria  normal  0.205729  n/a   
 
 
-
 
NC_008228  Patl_1154  Holliday junction resolvase YqgF  30.99 
 
 
143 aa  62.8  0.000000002  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_2514  Holliday junction resolvase-like protein  32.35 
 
 
150 aa  62.4  0.000000002  Cyanothece sp. PCC 7425  Bacteria  normal  0.36708  normal 
 
 
-
 
NC_011901  Tgr7_2911  Holliday junction resolvase YqgF  33.58 
 
 
163 aa  62.4  0.000000002  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.816073  n/a   
 
 
-
 
NC_010730  SYO3AOP1_0474  Holliday junction resolvase YqgF  34.33 
 
 
145 aa  62.4  0.000000002  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  hitchhiker  0.00800439  n/a   
 
 
-
 
NC_008527  LACR_0138  Holliday junction resolvase-like protein  33.09 
 
 
143 aa  61.6  0.000000004  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  n/a   
 
 
-
 
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