More than 300 homologs were found in PanDaTox collection
for query gene Patl_1154 on replicon NC_008228
Organism: Pseudoalteromonas atlantica T6c



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_008228  Patl_1154  Holliday junction resolvase YqgF  100 
 
 		 143 aa  291  2e-78  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_011138  MADE_03294  Holliday junction resolvase-like protein  67.61 
 
 		 143 aa  209  9e-54  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.659098  n/a   
 
 
-
 
NC_011663  Sbal223_1343  Holliday junction resolvase-like protein  63.5 
 
 		 141 aa  191  2e-48  Shewanella baltica OS223  Bacteria  hitchhiker  0.00897927  hitchhiker  0.00000000052642 
 
 
-
 
NC_009052  Sbal_3020  Holliday junction resolvase-like protein  63.5 
 
 		 141 aa  191  2e-48  Shewanella baltica OS155  Bacteria  hitchhiker  0.00101053  n/a   
 
 
-
 
NC_009665  Shew185_3035  Holliday junction resolvase-like protein  63.5 
 
 		 141 aa  191  2e-48  Shewanella baltica OS185  Bacteria  hitchhiker  0.00000814628  n/a   
 
 
-
 
NC_009997  Sbal195_3178  Holliday junction resolvase-like protein  63.5 
 
 		 141 aa  191  2e-48  Shewanella baltica OS195  Bacteria  hitchhiker  0.000555794  normal  0.0157194 
 
 
-
 
NC_004347  SO_3347  Holliday junction resolvase-like protein  63.97 
 
 		 141 aa  189  1e-47  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008321  Shewmr4_1198  Holliday junction resolvase-like protein  63.24 
 
 		 141 aa  189  2e-47  Shewanella sp. MR-4  Bacteria  hitchhiker  0.000276178  normal  1 
 
 
-
 
NC_008322  Shewmr7_1269  Holliday junction resolvase-like protein  63.24 
 
 		 141 aa  189  2e-47  Shewanella sp. MR-7  Bacteria  hitchhiker  0.000329275  normal  1 
 
 
-
 
NC_008577  Shewana3_1199  Holliday junction resolvase-like protein  63.24 
 
 		 141 aa  189  2e-47  Shewanella sp. ANA-3  Bacteria  normal  0.0107111  normal  0.529497 
 
 
-
 
NC_003910  CPS_1251  Holliday junction resolvase-like protein  61.87 
 
 		 148 aa  185  2e-46  Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_007954  Sden_2673  Holliday junction resolvase-like protein  63.31 
 
 		 141 aa  185  2e-46  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.0000201914  n/a   
 
 
-
 
NC_009438  Sputcn32_2682  Holliday junction resolvase-like protein  62.5 
 
 		 141 aa  185  2e-46  Shewanella putrefaciens CN-32  Bacteria  normal  0.0331396  n/a   
 
 
-
 
NC_008700  Sama_2473  Holliday junction resolvase-like protein  61.48 
 
 		 139 aa  184  4e-46  Shewanella amazonensis SB2B  Bacteria  normal  0.641283  normal  1 
 
 
-
 
NC_009901  Spea_1131  Holliday junction resolvase-like protein  60.14 
 
 		 141 aa  181  2.0000000000000003e-45  Shewanella pealeana ATCC 700345  Bacteria  normal  0.111461  n/a   
 
 
-
 
NC_010506  Swoo_1336  Holliday junction resolvase-like protein  61.03 
 
 		 139 aa  181  3e-45  Shewanella woodyi ATCC 51908  Bacteria  normal  0.164432  hitchhiker  0.000378103 
 
 
-
 
NC_008345  Sfri_2849  Holliday junction resolvase-like protein  61.03 
 
 		 139 aa  181  3e-45  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_012912  Dd1591_0500  Holliday junction resolvase-like protein  60.43 
 
 		 143 aa  180  6e-45  Dickeya zeae Ech1591  Bacteria  normal  0.23587  n/a   
 
 
-
 
NC_012917  PC1_3713  Holliday junction resolvase-like protein  61.03 
 
 		 139 aa  179  1e-44  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0641904  n/a   
 
 
-
 
NC_009831  Ssed_1236  Holliday junction resolvase-like protein  60 
 
 		 139 aa  177  2.9999999999999997e-44  Shewanella sediminis HAW-EB3  Bacteria  normal  0.578906  normal  0.405452 
 
 
-
 
NC_009092  Shew_1143  Holliday junction resolvase-like protein  60 
 
 		 139 aa  177  2.9999999999999997e-44  Shewanella loihica PV-4  Bacteria  normal  0.997205  normal  0.0325702 
 
 
-
 
NC_013421  Pecwa_3911  Holliday junction resolvase-like protein  60.58 
 
 		 139 aa  177  4e-44  Pectobacterium wasabiae WPP163  Bacteria  normal  0.0877728  n/a   
 
 
-
 
CP001509  ECD_02779  Holliday junction resolvase-like protein  59.26 
 
 		 138 aa  176  7e-44  Escherichia coli BL21(DE3)  Bacteria  normal  0.358182  n/a   
 
 
-
 
NC_011353  ECH74115_4252  Holliday junction resolvase-like protein  60 
 
 		 138 aa  176  7e-44  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.367892  normal  0.370097 
 
 
-
 
NC_012892  B21_02742  hypothetical protein  59.26 
 
 		 138 aa  176  7e-44  Escherichia coli BL21  Bacteria  normal  0.395069  n/a   
 
 
-
 
CP001637  EcDH1_0746  Holliday junction resolvase YqgF  59.26 
 
 		 138 aa  176  8e-44  Escherichia coli DH1  Bacteria  normal  0.61838  n/a   
 
 
-
 
NC_009800  EcHS_A3107  Holliday junction resolvase-like protein  59.26 
 
 		 138 aa  176  8e-44  Escherichia coli HS  Bacteria  normal  1  n/a   
 
 
-
 
NC_010468  EcolC_0765  Holliday junction resolvase-like protein  59.26 
 
 		 138 aa  176  8e-44  Escherichia coli ATCC 8739  Bacteria  normal  0.809741  hitchhiker  0.0000191582 
 
 
-
 
NC_010658  SbBS512_E3381  Holliday junction resolvase-like protein  59.26 
 
 		 138 aa  176  1e-43  Shigella boydii CDC 3083-94  Bacteria  normal  1  n/a   
 
 
-
 
NC_009801  EcE24377A_3292  Holliday junction resolvase-like protein  59.26 
 
 		 138 aa  176  1e-43  Escherichia coli E24377A  Bacteria  normal  0.684819  n/a   
 
 
-
 
NC_010498  EcSMS35_3091  Holliday junction resolvase-like protein  59.26 
 
 		 138 aa  176  1e-43  Escherichia coli SMS-3-5  Bacteria  normal  0.372008  decreased coverage  0.00000514809 
 
 
-
 
NC_012880  Dd703_0543  Holliday junction resolvase-like protein  58.96 
 
 		 139 aa  175  2e-43  Dickeya dadantii Ech703  Bacteria  normal  0.0491649  n/a   
 
 
-
 
NC_011080  SNSL254_A3344  Holliday junction resolvase-like protein  58.52 
 
 		 138 aa  173  6e-43  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.130119  normal  0.247443 
 
 
-
 
NC_011149  SeAg_B3260  Holliday junction resolvase-like protein  58.52 
 
 		 138 aa  173  7e-43  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.254908  n/a   
 
 
-
 
NC_011094  SeSA_A3271  Holliday junction resolvase-like protein  58.52 
 
 		 138 aa  173  7e-43  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  1  normal  0.0744312 
 
 
-
 
NC_011083  SeHA_C3336  Holliday junction resolvase-like protein  58.52 
 
 		 138 aa  173  7e-43  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  1  normal  0.392173 
 
 
-
 
NC_011205  SeD_A3440  Holliday junction resolvase-like protein  58.52 
 
 		 138 aa  172  9.999999999999999e-43  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  1  hitchhiker  0.00956364 
 
 
-
 
NC_008709  Ping_1285  Holliday junction resolvase YqgF  62.22 
 
 		 145 aa  172  9.999999999999999e-43  Psychromonas ingrahamii 37  Bacteria  normal  0.0394867  normal  1 
 
 
-
 
NC_009832  Spro_4028  Holliday junction resolvase-like protein  58.52 
 
 		 140 aa  170  5.999999999999999e-42  Serratia proteamaculans 568  Bacteria  normal  0.290268  hitchhiker  0.00115108 
 
 
-
 
NC_010159  YpAngola_A3340  Holliday junction resolvase-like protein  57.78 
 
 		 140 aa  169  1e-41  Yersinia pestis Angola  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009708  YpsIP31758_0834  Holliday junction resolvase-like protein  57.78 
 
 		 140 aa  169  1e-41  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  1  n/a   
 
 
-
 
NC_010465  YPK_0836  Holliday junction resolvase-like protein  57.78 
 
 		 140 aa  169  1e-41  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.0695104  n/a   
 
 
-
 
NC_009436  Ent638_3353  Holliday junction resolvase-like protein  56.3 
 
 		 138 aa  167  3e-41  Enterobacter sp. 638  Bacteria  normal  0.2584  decreased coverage  0.0020385 
 
 
-
 
NC_008309  HS_0010  Holliday junction resolvase-like protein  58.65 
 
 		 141 aa  166  7e-41  Haemophilus somnus 129PT  Bacteria  normal  1  n/a   
 
 
-
 
NC_013456  VEA_002460  putative Holliday junction resolvase  57.46 
 
 		 141 aa  165  2e-40  Vibrio sp. Ex25  Bacteria  normal  1  n/a   
 
 
-
 
NC_009457  VC0395_A0018  Holliday junction resolvase-like protein  55.47 
 
 		 140 aa  163  8e-40  Vibrio cholerae O395  Bacteria  normal  1  n/a   
 
 
-
 
NC_009783  VIBHAR_03575  Holliday junction resolvase-like protein  58.21 
 
 		 136 aa  162  1.0000000000000001e-39  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011312  VSAL_I0546  Holliday junction resolvase-like protein  56.2 
 
 		 141 aa  160  8.000000000000001e-39  Aliivibrio salmonicida LFI1238  Bacteria  normal  1  n/a   
 
 
-
 
NC_007912  Sde_3638  Holliday junction resolvase-like protein  53.33 
 
 		 142 aa  150  4e-36  Saccharophagus degradans 2-40  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009654  Mmwyl1_0540  Holliday junction resolvase YqgF  45.59 
 
 		 156 aa  149  2e-35  Marinomonas sp. MWYL1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008740  Maqu_3763  Holliday junction resolvase YqgF  47.86 
 
 		 143 aa  147  6e-35  Marinobacter aquaeolei VT8  Bacteria  normal  1  n/a   
 
 
-
 
NC_006369  lpl0621  Holliday junction resolvase-like protein  48.48 
 
 		 139 aa  143  8.000000000000001e-34  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_006368  lpp0637  Holliday junction resolvase-like protein  48.48 
 
 		 139 aa  143  9e-34  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_007963  Csal_0059  Holliday junction resolvase-like protein  50.36 
 
 		 148 aa  137  3.9999999999999997e-32  Chromohalobacter salexigens DSM 3043  Bacteria  normal  1  n/a   
 
 
-
 
NC_007484  Noc_0367  Holliday junction resolvase YqgF  48.51 
 
 		 152 aa  135  1e-31  Nitrosococcus oceani ATCC 19707  Bacteria  normal  1  n/a   
 
 
-
 
NC_009727  CBUD_2194  Holliday junction resolvase-like protein  45.45 
 
 		 141 aa  131  3e-30  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  0.401443  n/a   
 
 
-
 
NC_010117  COXBURSA331_A2220  Holliday junction resolvase-like protein  45.45 
 
 		 141 aa  131  3.9999999999999996e-30  Coxiella burnetii RSA 331  Bacteria  hitchhiker  0.0000000031992  n/a   
 
 
-
 
NC_009439  Pmen_0399  Holliday junction resolvase-like protein  43.07 
 
 		 144 aa  130  5e-30  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010501  PputW619_0468  Holliday junction resolvase-like protein  45.52 
 
 		 141 aa  129  1.0000000000000001e-29  Pseudomonas putida W619  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009512  Pput_4870  Holliday junction resolvase-like protein  44.78 
 
 		 141 aa  128  2.0000000000000002e-29  Pseudomonas putida F1  Bacteria  normal  1  normal  0.0143218 
 
 
-
 
NC_010322  PputGB1_5046  Holliday junction resolvase-like protein  44.78 
 
 		 141 aa  128  2.0000000000000002e-29  Pseudomonas putida GB-1  Bacteria  normal  0.433304  normal  1 
 
 
-
 
NC_002947  PP_4996  Holliday junction resolvase-like protein  44.78 
 
 		 141 aa  128  3e-29  Pseudomonas putida KT2440  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007492  Pfl01_5312  Holliday junction resolvase-like protein  43.38 
 
 		 145 aa  126  1.0000000000000001e-28  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.0190801  normal  0.217295 
 
 
-
 
NC_012560  Avin_03140  Holliday junction resolvase-like protein  42.34 
 
 		 142 aa  123  9e-28  Azotobacter vinelandii DJ  Bacteria  normal  0.567501  n/a   
 
 
-
 
NC_004578  PSPTO_5038  hypothetical protein  43.38 
 
 		 146 aa  123  1e-27  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
-
 
NC_009656  PSPA7_0504  Holliday junction resolvase-like protein  44.44 
 
 		 144 aa  122  1e-27  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_007005  Psyr_0484  Holliday junction resolvase-like protein  43.38 
 
 		 146 aa  122  2e-27  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008463  PA14_05280  Holliday junction resolvase-like protein  44.44 
 
 		 144 aa  122  2e-27  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007298  Daro_3892  Holliday junction resolvase-like protein  43.38 
 
 		 146 aa  119  9.999999999999999e-27  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007520  Tcr_1828  Holliday junction resolvase YqgF  38.85 
 
 		 134 aa  118  3e-26  Thiomicrospira crunogena XCL-2  Bacteria  normal  1  n/a   
 
 
-
 
NC_008340  Mlg_0348  Holliday junction resolvase YqgF  42.86 
 
 		 144 aa  112  2.0000000000000002e-24  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.180305  normal  1 
 
 
-
 
NC_011901  Tgr7_2911  Holliday junction resolvase YqgF  36.23 
 
 		 163 aa  105  2e-22  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.816073  n/a   
 
 
-
 
NC_010622  Bphy_2326  Holliday junction resolvase-like protein  37.31 
 
 		 151 aa  103  6e-22  Burkholderia phymatum STM815  Bacteria  normal  1  normal  0.0635951 
 
 
-
 
NC_002977  MCA2335  hypothetical protein  38.17 
 
 		 151 aa  102  1e-21  Methylococcus capsulatus str. Bath  Bacteria  normal  1  n/a   
 
 
-
 
NC_009524  PsycPRwf_0143  Holliday junction resolvase YqgF  37.06 
 
 		 177 aa  102  1e-21  Psychrobacter sp. PRwf-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007510  Bcep18194_A3963  Holliday junction resolvase-like protein  37.59 
 
 		 149 aa  101  3e-21  Burkholderia sp. 383  Bacteria  normal  1  normal  0.539384 
 
 
-
 
NC_007951  Bxe_A3810  Holliday junction resolvase-like protein  35.25 
 
 		 146 aa  100  5e-21  Burkholderia xenovorans LB400  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010508  Bcenmc03_0836  Holliday junction resolvase-like protein  36.84 
 
 		 149 aa  100  9e-21  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.311364  hitchhiker  0.00221177 
 
 
-
 
NC_008060  Bcen_0383  Holliday junction resolvase-like protein  36.84 
 
 		 149 aa  100  9e-21  Burkholderia cenocepacia AU 1054  Bacteria  normal  1  n/a   
 
 
-
 
NC_008542  Bcen2424_0865  Holliday junction resolvase-like protein  36.84 
 
 		 149 aa  100  9e-21  Burkholderia cenocepacia HI2424  Bacteria  normal  1  n/a   
 
 
-
 
NC_010551  BamMC406_0755  Holliday junction resolvase-like protein  36.09 
 
 		 149 aa  99.8  1e-20  Burkholderia ambifaria MC40-6  Bacteria  normal  0.302865  normal  0.26532 
 
 
-
 
NC_008390  Bamb_0738  Holliday junction resolvase-like protein  36.09 
 
 		 149 aa  99.8  1e-20  Burkholderia ambifaria AMMD  Bacteria  normal  0.89107  n/a   
 
 
-
 
NC_010084  Bmul_2523  Holliday junction resolvase-like protein  35.92 
 
 		 149 aa  99.4  2e-20  Burkholderia multivorans ATCC 17616  Bacteria  normal  1  normal  0.159244 
 
 
-
 
NC_007947  Mfla_2100  Holliday junction resolvase-like protein  36.03 
 
 		 146 aa  99  2e-20  Methylobacillus flagellatus KT  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010681  Bphyt_0869  Holliday junction resolvase-like protein  37.12 
 
 		 146 aa  98.6  3e-20  Burkholderia phytofirmans PsJN  Bacteria  normal  1  normal  0.0747835 
 
 
-
 
NC_009074  BURPS668_3111  Holliday junction resolvase-like protein  36.36 
 
 		 146 aa  95.9  2e-19  Burkholderia pseudomallei 668  Bacteria  normal  1  n/a   
 
 
-
 
NC_008836  BMA10229_A2747  Holliday junction resolvase-like protein  36.36 
 
 		 146 aa  95.5  2e-19  Burkholderia mallei NCTC 10229  Bacteria  normal  1  n/a   
 
 
-
 
NC_009080  BMA10247_1858  Holliday junction resolvase-like protein  36.36 
 
 		 146 aa  95.5  2e-19  Burkholderia mallei NCTC 10247  Bacteria  normal  1  n/a   
 
 
-
 
NC_006348  BMA1996  Holliday junction resolvase-like protein  36.36 
 
 		 146 aa  95.5  2e-19  Burkholderia mallei ATCC 23344  Bacteria  normal  0.391575  n/a   
 
 
-
 
NC_007434  BURPS1710b_3169  Holliday junction resolvase-like protein  36.36 
 
 		 146 aa  95.5  2e-19  Burkholderia pseudomallei 1710b  Bacteria  normal  1  n/a   
 
 
-
 
NC_008785  BMASAVP1_A0917  Holliday junction resolvase-like protein  36.36 
 
 		 146 aa  95.5  2e-19  Burkholderia mallei SAVP1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009076  BURPS1106A_3147  Holliday junction resolvase-like protein  36.36 
 
 		 146 aa  95.5  2e-19  Burkholderia pseudomallei 1106a  Bacteria  normal  0.822464  n/a   
 
 
-
 
NC_007614  Nmul_A2479  Holliday junction resolvase-like protein  36.09 
 
 		 151 aa  95.1  3e-19  Nitrosospira multiformis ATCC 25196  Bacteria  normal  1  n/a   
 
 
-
 
NC_007404  Tbd_2580  Holliday junction resolvase-like protein  37.69 
 
 		 145 aa  93.2  1e-18  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  1  normal  0.0863234 
 
 
-
 
NC_008789  Hhal_0939  Holliday junction resolvase YqgF  42.31 
 
 		 142 aa  93.2  1e-18  Halorhodospira halophila SL1  Bacteria  normal  0.193573  n/a   
 
 
-
 
NC_007651  BTH_I1463  Holliday junction resolvase-like protein  35.61 
 
 		 146 aa  92.8  2e-18  Burkholderia thailandensis E264  Bacteria  normal  1  n/a   
 
 
-
 
NC_009379  Pnuc_0244  Holliday junction resolvase-like protein  37.88 
 
 		 138 aa  92  3e-18  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  0.535412  n/a   
 
 
-
 
NC_007969  Pcryo_0061  Holliday junction resolvase YqgF  35 
 
 		 173 aa  91.3  4e-18  Psychrobacter cryohalolentis K5  Bacteria  normal  1  normal  0.498043 
 
 
-
 
NC_010531  Pnec_0265  Holliday junction resolvase-like protein  37.16 
 
 		 147 aa  89  2e-17  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013422  Hneap_1355  Holliday junction resolvase YqgF  35.04 
 
 		 165 aa  87.8  5e-17  Halothiobacillus neapolitanus c2  Bacteria  normal  1  n/a   
 
 
-
 
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