| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1236 |
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| Symbol | |
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| ID | 5610432 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1469964 |
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| End bp | 1470383 |
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| Gene Length | 420 bp |
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| Protein Length | 139 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640932089 |
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| Product | Holliday junction resolvase-like protein |
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| Protein accession | YP_001472975 |
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| Protein GI | 157374375 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0816] Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) |
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| TIGRFAM ID | [TIGR00250] RNAse H-fold protein YqgF |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.578906 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.405452 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGTTCAT TAACGGTATT AGGCTTCGAT TACGGCACTA AGAGTATTGG CGTCGCCATA
GGGCAATCGC TCACCGGTAG TGCTAACCCC CTGTTGTCAA TTAACGCGGT CGATGGGATC
CCAAAATGGG AAGAGATAGG CATGCTTATC GAAGAGTGGA AACCAGACCT GGTAGTGGTC
GGCCTACCAC TAAACATGGA CGGCTCAGAA CAGGAGATGA CACAGAGAGC CAAGAAGTTT
GCCAATCGCA TTAATGGTCG GTTTGGGGTA AAAATTGCCA CTCAAGATGA ACGTCTCACT
ACCGCCGATG CTAAAGCCAG ACTCTTTGAG ATGGGCGGCT ATAAAGCGCT AACTAAGGGA
CAAGTCGATG CTATGTCGGC GGTATTGATT ATCGAAAGCT ATTTCGAGAA TTTATACTAA
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| Protein sequence | MSSLTVLGFD YGTKSIGVAI GQSLTGSANP LLSINAVDGI PKWEEIGMLI EEWKPDLVVV
GLPLNMDGSE QEMTQRAKKF ANRINGRFGV KIATQDERLT TADAKARLFE MGGYKALTKG
QVDAMSAVLI IESYFENLY
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