Gene Patl_1154 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_1154 
Symbol 
ID4173205 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand+ 
Start bp1395566 
End bp1395997 
Gene Length432 bp 
Protein Length143 aa 
Translation table11 
GC content47% 
IMG OID638054161 
ProductHolliday junction resolvase YqgF 
Protein accessionYP_660734 
Protein GI109897479 
COG category[L] Replication, recombination and repair 
COG ID[COG0816] Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) 
TIGRFAM ID[TIGR00250] RNAse H-fold protein YqgF 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCAAAAA CTGGACAGCG TACTGTTCTC GCATTTGATT TTGGCACAAA GAGTATTGGC 
GTTGCTGTAG GCCAAGAGGT GACGGGTACG GCTTCGCCAC TAGATGCGAT CAAAGCCGTA 
GATGGGATAC CAAATTGGGA CGTTGTCGCT AAGGTGTTTG AGCAGTGGCA ACCTGACCTA 
GCGCTTGTGG GCTTACCCTT GAATATGGAT GGTACCTTTC AACAGGTAAC GTTTGCAGCG 
AAAAAGTTTG GCAATCGATT AAGCGCGAAG TACAGAGTCC CAGTTGAAAC AGTAGACGAG 
CGTCTGACAA CCGTCGATGC TAAAGCTCGT TTGTTTGAAA TGGGCGGTTT CAAAAAGCTC 
GATAAGCAGA AGATTGATAG TGCATCTGCC TGTCTAATCT TTGAGAGTTG GGTGGAGCAA 
TCCTACTCCT AA
 
Protein sequence
MAKTGQRTVL AFDFGTKSIG VAVGQEVTGT ASPLDAIKAV DGIPNWDVVA KVFEQWQPDL 
ALVGLPLNMD GTFQQVTFAA KKFGNRLSAK YRVPVETVDE RLTTVDAKAR LFEMGGFKKL 
DKQKIDSASA CLIFESWVEQ SYS