More than 300 homologs were found in PanDaTox collection
for query gene Rmar_0873 on replicon NC_013501
Organism: Rhodothermus marinus DSM 4252



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013501  Rmar_0873  Holliday junction resolvase YqgF  100 
 
 
145 aa  281  2.0000000000000002e-75  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_010831  Cphamn1_2429  Holliday junction resolvase YqgF  39.1 
 
 
144 aa  111  4.0000000000000004e-24  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal 
 
 
-
 
NC_010830  Aasi_1327  Holliday junction resolvase-like protein  40.6 
 
 
141 aa  111  4.0000000000000004e-24  Candidatus Amoebophilus asiaticus 5a2  Bacteria  n/a    normal  0.513618 
 
 
-
 
NC_011060  Ppha_2805  Holliday junction resolvase YqgF  40.15 
 
 
145 aa  110  5e-24  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_007512  Plut_2047  Holliday junction resolvase YqgF  38.13 
 
 
141 aa  109  1.0000000000000001e-23  Chlorobium luteolum DSM 273  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_4051  Holliday junction resolvase YqgF  35.82 
 
 
137 aa  109  1.0000000000000001e-23  Dyadobacter fermentans DSM 18053  Bacteria  normal  hitchhiker  0.00000789262 
 
 
-
 
NC_011059  Paes_2162  Holliday junction resolvase YqgF  37.23 
 
 
142 aa  108  3e-23  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.337322  normal 
 
 
-
 
NC_013162  Coch_1395  Holliday junction resolvase YqgF  38.93 
 
 
143 aa  107  4.0000000000000004e-23  Capnocytophaga ochracea DSM 7271  Bacteria  normal  n/a   
 
 
-
 
NC_008639  Cpha266_2570  Holliday junction resolvase YqgF  36.76 
 
 
142 aa  107  6e-23  Chlorobium phaeobacteroides DSM 266  Bacteria  hitchhiker  0.00347975  n/a   
 
 
-
 
NC_010803  Clim_2406  Holliday junction resolvase YqgF  39.55 
 
 
142 aa  106  1e-22  Chlorobium limicola DSM 245  Bacteria  normal  0.406379  n/a   
 
 
-
 
NC_013061  Phep_0074  Holliday junction resolvase YqgF  36.3 
 
 
138 aa  105  2e-22  Pedobacter heparinus DSM 2366  Bacteria  normal  0.974882  normal 
 
 
-
 
NC_008255  CHU_0692  Holliday junction resolvase-like protein  35.56 
 
 
152 aa  104  5e-22  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.458381 
 
 
-
 
NC_009441  Fjoh_2528  Holliday junction resolvase-like protein  31.85 
 
 
138 aa  103  6e-22  Flavobacterium johnsoniae UW101  Bacteria  normal  0.551236  n/a   
 
 
-
 
NC_007514  Cag_0014  Holliday junction resolvase YqgF  41.18 
 
 
140 aa  103  7e-22  Chlorobium chlorochromatii CaD3  Bacteria  normal  0.639301  n/a   
 
 
-
 
NC_013132  Cpin_1903  Holliday junction resolvase YqgF  38.81 
 
 
136 aa  102  2e-21  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_5430  Holliday junction resolvase YqgF  36.57 
 
 
142 aa  100  8e-21  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_014230  CA2559_06155  Holliday junction resolvase-like protein  35.61 
 
 
135 aa  99.4  2e-20  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_002950  PG2202  Holliday junction resolvase-like protein  36.3 
 
 
138 aa  93.6  9e-19  Porphyromonas gingivalis W83  Bacteria  n/a    normal 
 
 
-
 
NC_011898  Ccel_2239  Holliday junction resolvase-like protein  35.29 
 
 
142 aa  87.8  4e-17  Clostridium cellulolyticum H10  Bacteria  decreased coverage  0.0000140275  n/a   
 
 
-
 
NC_009012  Cthe_0153  Holliday junction resolvase-like protein  34.78 
 
 
141 aa  86.3  1e-16  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.0185653  n/a   
 
 
-
 
NC_011126  HY04AAS1_0205  Holliday junction resolvase YqgF  36.09 
 
 
123 aa  83.2  0.000000000000001  Hydrogenobaculum sp. Y04AAS1  Bacteria  normal  n/a   
 
 
-
 
NC_010655  Amuc_1191  Holliday junction resolvase YqgF  37.31 
 
 
141 aa  82.4  0.000000000000002  Akkermansia muciniphila ATCC BAA-835  Bacteria  hitchhiker  0.0000237997  normal 
 
 
-
 
NC_011831  Cagg_0094  Holliday junction resolvase YqgF  38.81 
 
 
142 aa  80.9  0.000000000000005  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.0018567  normal 
 
 
-
 
NC_009767  Rcas_3713  Holliday junction resolvase YqgF  38.03 
 
 
146 aa  80.9  0.000000000000006  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0658941  hitchhiker  0.00476179 
 
 
-
 
NC_010730  SYO3AOP1_0474  Holliday junction resolvase YqgF  35.56 
 
 
145 aa  80.1  0.000000000000008  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  hitchhiker  0.00800439  n/a   
 
 
-
 
NC_009972  Haur_3633  Holliday junction resolvase YqgF  37.14 
 
 
158 aa  80.1  0.00000000000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_0964  Holliday junction resolvase YqgF  36.69 
 
 
138 aa  79  0.00000000000002  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009523  RoseRS_3225  Holliday junction resolvase YqgF  37.96 
 
 
141 aa  78.6  0.00000000000003  Roseiflexus sp. RS-1  Bacteria  normal  0.387387  normal 
 
 
-
 
NC_011661  Dtur_1024  Holliday junction resolvase YqgF  36.03 
 
 
141 aa  77.8  0.00000000000005  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_013522  Taci_1032  Holliday junction resolvase YqgF  34.33 
 
 
142 aa  77  0.00000000000008  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_007799  ECH_0460  hypothetical protein  31.85 
 
 
156 aa  77  0.00000000000008  Ehrlichia chaffeensis str. Arkansas  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_2673  Holliday junction resolvase-like protein  32.86 
 
 
141 aa  76.3  0.0000000000001  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.0000201914  n/a   
 
 
-
 
NC_008700  Sama_2473  Holliday junction resolvase-like protein  36.03 
 
 
139 aa  76.3  0.0000000000001  Shewanella amazonensis SB2B  Bacteria  normal  0.641283  normal 
 
 
-
 
NC_008009  Acid345_0556  Holliday junction resolvase YqgF  35.04 
 
 
153 aa  75.9  0.0000000000002  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.901255  normal  0.0480752 
 
 
-
 
NC_008345  Sfri_2849  Holliday junction resolvase-like protein  34.75 
 
 
139 aa  75.5  0.0000000000002  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_007354  Ecaj_0565  hypothetical protein  29.58 
 
 
156 aa  74.3  0.0000000000005  Ehrlichia canis str. Jake  Bacteria  normal  0.690098  n/a   
 
 
-
 
NC_007614  Nmul_A2479  Holliday junction resolvase-like protein  38.24 
 
 
151 aa  74.3  0.0000000000005  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_1130  Holliday junction resolvase YqgF  38.81 
 
 
142 aa  74.3  0.0000000000005  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_05800  Holliday junction resolvase YqgF  35.92 
 
 
140 aa  74.3  0.0000000000005  Halothermothrix orenii H 168  Bacteria  normal  0.209228  n/a   
 
 
-
 
NC_008346  Swol_0470  Holliday junction resolvase YqgF  35.56 
 
 
141 aa  74.3  0.0000000000005  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  unclonable  0.00000000599692  n/a   
 
 
-
 
NC_009831  Ssed_1236  Holliday junction resolvase-like protein  33.33 
 
 
139 aa  73.9  0.0000000000007  Shewanella sediminis HAW-EB3  Bacteria  normal  0.578906  normal  0.405452 
 
 
-
 
NC_013173  Dbac_1790  Holliday junction resolvase YqgF  37.68 
 
 
133 aa  73.9  0.0000000000007  Desulfomicrobium baculatum DSM 4028  Bacteria  decreased coverage  0.00751815  n/a   
 
 
-
 
NC_009901  Spea_1131  Holliday junction resolvase-like protein  35.29 
 
 
141 aa  73.2  0.000000000001  Shewanella pealeana ATCC 700345  Bacteria  normal  0.111461  n/a   
 
 
-
 
NC_008321  Shewmr4_1198  Holliday junction resolvase-like protein  33.78 
 
 
141 aa  73.2  0.000000000001  Shewanella sp. MR-4  Bacteria  hitchhiker  0.000276178  normal 
 
 
-
 
NC_008322  Shewmr7_1269  Holliday junction resolvase-like protein  33.78 
 
 
141 aa  73.2  0.000000000001  Shewanella sp. MR-7  Bacteria  hitchhiker  0.000329275  normal 
 
 
-
 
NC_009438  Sputcn32_2682  Holliday junction resolvase-like protein  33.11 
 
 
141 aa  73.2  0.000000000001  Shewanella putrefaciens CN-32  Bacteria  normal  0.0331396  n/a   
 
 
-
 
NC_009092  Shew_1143  Holliday junction resolvase-like protein  35.46 
 
 
139 aa  73.2  0.000000000001  Shewanella loihica PV-4  Bacteria  normal  0.997205  normal  0.0325702 
 
 
-
 
NC_008577  Shewana3_1199  Holliday junction resolvase-like protein  33.78 
 
 
141 aa  73.2  0.000000000001  Shewanella sp. ANA-3  Bacteria  normal  0.0107111  normal  0.529497 
 
 
-
 
NC_004347  SO_3347  Holliday junction resolvase-like protein  33.82 
 
 
141 aa  72  0.000000000002  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_012034  Athe_1211  Holliday junction resolvase YqgF  34.06 
 
 
138 aa  72.4  0.000000000002  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.271637  n/a   
 
 
-
 
NC_011894  Mnod_3314  Holliday junction resolvase YqgF  35.04 
 
 
163 aa  72.4  0.000000000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_2024  Holliday junction resolvase YqgF  35 
 
 
144 aa  72  0.000000000002  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.330713  n/a   
 
 
-
 
NC_014212  Mesil_0224  Holliday junction resolvase YqgF  32.86 
 
 
135 aa  71.2  0.000000000004  Meiothermus silvanus DSM 9946  Bacteria  normal  0.776353  normal  0.0108713 
 
 
-
 
NC_012917  PC1_3713  Holliday junction resolvase-like protein  33.8 
 
 
139 aa  71.2  0.000000000005  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0641904  n/a   
 
 
-
 
NC_008578  Acel_1329  Holliday junction resolvase YqgF  35.92 
 
 
173 aa  70.5  0.000000000008  Acidothermus cellulolyticus 11B  Bacteria  normal  0.0531797  normal  0.27422 
 
 
-
 
NC_010511  M446_4344  Holliday junction resolvase YqgF  34.78 
 
 
168 aa  70.1  0.000000000009  Methylobacterium sp. 4-46  Bacteria  normal  0.892789  normal  0.367855 
 
 
-
 
NC_012793  GWCH70_2488  Holliday junction resolvase YqgF  34.29 
 
 
138 aa  69.7  0.00000000001  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.0000000680199  n/a   
 
 
-
 
NC_007604  Synpcc7942_2398  Holliday junction resolvase-like protein  36.88 
 
 
149 aa  70.1  0.00000000001  Synechococcus elongatus PCC 7942  Bacteria  normal  0.0366153  hitchhiker  0.00151496 
 
 
-
 
NC_010506  Swoo_1336  Holliday junction resolvase-like protein  32.65 
 
 
139 aa  70.1  0.00000000001  Shewanella woodyi ATCC 51908  Bacteria  normal  0.164432  hitchhiker  0.000378103 
 
 
-
 
NC_011138  MADE_03294  Holliday junction resolvase-like protein  32.85 
 
 
143 aa  69.7  0.00000000001  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.659098  n/a   
 
 
-
 
NC_002976  SERP1180  Holliday junction resolvase-like protein  31.25 
 
 
142 aa  68.9  0.00000000002  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_2297  Holliday junction resolvase YqgF  34.01 
 
 
150 aa  68.9  0.00000000002  Clostridium phytofermentans ISDg  Bacteria  normal  0.470334  n/a   
 
 
-
 
NC_008148  Rxyl_1360  Holliday junction resolvase YqgF  37.78 
 
 
139 aa  68.9  0.00000000002  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0122615  n/a   
 
 
-
 
NC_008261  CPF_2031  Holliday junction resolvase-like protein  31.85 
 
 
137 aa  68.6  0.00000000003  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_1748  Holliday junction resolvase-like protein  31.85 
 
 
137 aa  68.6  0.00000000003  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_0475  Holliday junction resolvase YqgF  36.23 
 
 
170 aa  68.2  0.00000000003  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.437798  normal  0.0955854 
 
 
-
 
NC_009380  Strop_1829  Holliday junction resolvase YqgF  37.14 
 
 
153 aa  68.2  0.00000000004  Salinispora tropica CNB-440  Bacteria  normal  0.0551936  normal 
 
 
-
 
NC_010320  Teth514_1491  Holliday junction resolvase-like protein  31.43 
 
 
139 aa  68.2  0.00000000004  Thermoanaerobacter sp. X514  Bacteria  unclonable  0.0000000000748947  n/a   
 
 
-
 
NC_011830  Dhaf_3562  Holliday junction resolvase-like protein  33.33 
 
 
142 aa  67.8  0.00000000004  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000000000000329746  n/a   
 
 
-
 
NC_009953  Sare_1820  Holliday junction resolvase YqgF  36.11 
 
 
153 aa  67.8  0.00000000004  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.0000610168 
 
 
-
 
CP001509  ECD_02779  Holliday junction resolvase-like protein  31.43 
 
 
138 aa  67.8  0.00000000005  Escherichia coli BL21(DE3)  Bacteria  normal  0.358182  n/a   
 
 
-
 
NC_007298  Daro_3892  Holliday junction resolvase-like protein  35.56 
 
 
146 aa  67.8  0.00000000005  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_3877  Holliday junction resolvase YqgF  35.42 
 
 
151 aa  67.8  0.00000000005  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.843962  normal 
 
 
-
 
NC_012892  B21_02742  hypothetical protein  31.43 
 
 
138 aa  67.8  0.00000000005  Escherichia coli BL21  Bacteria  normal  0.395069  n/a   
 
 
-
 
NC_012880  Dd703_0543  Holliday junction resolvase-like protein  35.04 
 
 
139 aa  67.8  0.00000000005  Dickeya dadantii Ech703  Bacteria  normal  0.0491649  n/a   
 
 
-
 
NC_009997  Sbal195_3178  Holliday junction resolvase-like protein  30.46 
 
 
141 aa  67.4  0.00000000006  Shewanella baltica OS195  Bacteria  hitchhiker  0.000555794  normal  0.0157194 
 
 
-
 
NC_011663  Sbal223_1343  Holliday junction resolvase-like protein  30.46 
 
 
141 aa  67.4  0.00000000006  Shewanella baltica OS223  Bacteria  hitchhiker  0.00897927  hitchhiker  0.00000000052642 
 
 
-
 
NC_009665  Shew185_3035  Holliday junction resolvase-like protein  30.46 
 
 
141 aa  67.4  0.00000000006  Shewanella baltica OS185  Bacteria  hitchhiker  0.00000814628  n/a   
 
 
-
 
NC_012912  Dd1591_0500  Holliday junction resolvase-like protein  33.82 
 
 
143 aa  67.4  0.00000000006  Dickeya zeae Ech1591  Bacteria  normal  0.23587  n/a   
 
 
-
 
NC_009052  Sbal_3020  Holliday junction resolvase-like protein  30.46 
 
 
141 aa  67.4  0.00000000006  Shewanella baltica OS155  Bacteria  hitchhiker  0.00101053  n/a   
 
 
-
 
CP001637  EcDH1_0746  Holliday junction resolvase YqgF  31.65 
 
 
138 aa  67  0.00000000008  Escherichia coli DH1  Bacteria  normal  0.61838  n/a   
 
 
-
 
NC_011083  SeHA_C3336  Holliday junction resolvase-like protein  34.97 
 
 
138 aa  67  0.00000000008  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.392173 
 
 
-
 
NC_010468  EcolC_0765  Holliday junction resolvase-like protein  31.65 
 
 
138 aa  67  0.00000000008  Escherichia coli ATCC 8739  Bacteria  normal  0.809741  hitchhiker  0.0000191582 
 
 
-
 
NC_009800  EcHS_A3107  Holliday junction resolvase-like protein  31.65 
 
 
138 aa  67  0.00000000008  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_4233  Holliday junction resolvase-like protein  32.37 
 
 
137 aa  67  0.00000000008  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.000272031  n/a   
 
 
-
 
NC_011094  SeSA_A3271  Holliday junction resolvase-like protein  34.97 
 
 
138 aa  67  0.00000000008  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal  0.0744312 
 
 
-
 
NC_011149  SeAg_B3260  Holliday junction resolvase-like protein  34.97 
 
 
138 aa  67  0.00000000008  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.254908  n/a   
 
 
-
 
NC_011353  ECH74115_4252  Holliday junction resolvase-like protein  35.66 
 
 
138 aa  67  0.00000000009  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.367892  normal  0.370097 
 
 
-
 
NC_011772  BCG9842_B0730  Holliday junction resolvase-like protein  32.37 
 
 
137 aa  66.6  0.00000000009  Bacillus cereus G9842  Bacteria  decreased coverage  0.0000000542239  normal 
 
 
-
 
NC_009832  Spro_4028  Holliday junction resolvase-like protein  32.35 
 
 
140 aa  66.6  0.00000000009  Serratia proteamaculans 568  Bacteria  normal  0.290268  hitchhiker  0.00115108 
 
 
-
 
NC_010498  EcSMS35_3091  Holliday junction resolvase-like protein  34.97 
 
 
138 aa  66.2  0.0000000001  Escherichia coli SMS-3-5  Bacteria  normal  0.372008  decreased coverage  0.00000514809 
 
 
-
 
NC_005945  BAS4282  Holliday junction resolvase-like protein  32.37 
 
 
137 aa  66.2  0.0000000001  Bacillus anthracis str. Sterne  Bacteria  hitchhiker  0.000000036093  n/a   
 
 
-
 
NC_009632  SaurJH1_1707  Holliday junction resolvase-like protein  32.64 
 
 
142 aa  66.6  0.0000000001  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.24342  n/a   
 
 
-
 
NC_013385  Adeg_1438  Holliday junction resolvase YqgF  35.66 
 
 
146 aa  66.2  0.0000000001  Ammonifex degensii KC4  Bacteria  normal  0.0335959  n/a   
 
 
-
 
NC_010658  SbBS512_E3381  Holliday junction resolvase-like protein  34.97 
 
 
138 aa  66.2  0.0000000001  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A3440  Holliday junction resolvase-like protein  34.97 
 
 
138 aa  66.6  0.0000000001  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  hitchhiker  0.00956364 
 
 
-
 
NC_010718  Nther_1778  Holliday junction resolvase YqgF  31.69 
 
 
141 aa  66.6  0.0000000001  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal  0.140554 
 
 
-
 
NC_011725  BCB4264_A4506  Holliday junction resolvase-like protein  32.37 
 
 
137 aa  66.2  0.0000000001  Bacillus cereus B4264  Bacteria  normal  0.860088  n/a   
 
 
-
 
NC_009801  EcE24377A_3292  Holliday junction resolvase-like protein  34.97 
 
 
138 aa  66.2  0.0000000001  Escherichia coli E24377A  Bacteria  normal  0.684819  n/a   
 
 
-
 
NC_011080  SNSL254_A3344  Holliday junction resolvase-like protein  34.97 
 
 
138 aa  66.6  0.0000000001  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.130119  normal  0.247443 
 
 
-
 
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