299 homologs were found in PanDaTox collection
for query gene Ndas_3074 on replicon NC_014210
Organism: Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_014210  Ndas_3074  Holliday junction resolvase YqgF  100 
 
 
161 aa  313  8e-85  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.459764 
 
 
-
 
NC_007333  Tfu_2069  Holliday junction resolvase-like protein  74.05 
 
 
159 aa  174  3e-43  Thermobifida fusca YX  Bacteria  normal  0.0705886  n/a   
 
 
-
 
NC_013595  Sros_6093  endonuclease involved in recombination-like protein  59.87 
 
 
163 aa  166  9e-41  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0746227  normal 
 
 
-
 
NC_008699  Noca_2408  Holliday junction resolvase-like protein  57.67 
 
 
156 aa  166  1e-40  Nocardioides sp. JS614  Bacteria  normal  0.332292  n/a   
 
 
-
 
NC_008578  Acel_1329  Holliday junction resolvase YqgF  56.96 
 
 
173 aa  146  1.0000000000000001e-34  Acidothermus cellulolyticus 11B  Bacteria  normal  0.0531797  normal  0.27422 
 
 
-
 
NC_014165  Tbis_2046  Holliday junction resolvase YqgF  59.38 
 
 
163 aa  145  2.0000000000000003e-34  Thermobispora bispora DSM 43833  Bacteria  normal  0.0425259  normal 
 
 
-
 
NC_013510  Tcur_2136  Holliday junction resolvase YqgF  59.49 
 
 
152 aa  139  1.9999999999999998e-32  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.000271405  n/a   
 
 
-
 
NC_012669  Bcav_2015  Holliday junction resolvase YqgF  53.59 
 
 
163 aa  135  2e-31  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.756916  normal  0.07881 
 
 
-
 
NC_007777  Francci3_3213  Holliday junction resolvase-like protein  51.32 
 
 
202 aa  130  7.999999999999999e-30  Frankia sp. CcI3  Bacteria  normal  0.0825611  normal 
 
 
-
 
NC_013131  Caci_2379  Holliday junction resolvase-like protein  52.44 
 
 
171 aa  129  2.0000000000000002e-29  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_1819  Holliday junction resolvase YqgF  50.94 
 
 
190 aa  129  2.0000000000000002e-29  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0503115  normal 
 
 
-
 
NC_008146  Mmcs_2347  Holliday junction resolvase-like protein  50.98 
 
 
169 aa  124  8.000000000000001e-28  Mycobacterium sp. MCS  Bacteria  normal  0.502005  n/a   
 
 
-
 
NC_008705  Mkms_2394  Holliday junction resolvase-like protein  50.98 
 
 
169 aa  124  8.000000000000001e-28  Mycobacterium sp. KMS  Bacteria  normal  normal  0.345644 
 
 
-
 
NC_009077  Mjls_2388  Holliday junction resolvase-like protein  50.98 
 
 
169 aa  123  1e-27  Mycobacterium sp. JLS  Bacteria  normal  normal  0.0472019 
 
 
-
 
NC_013172  Bfae_16350  conserved hypothetical protein TIGR00250  47.53 
 
 
181 aa  122  2e-27  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_1695  Holliday junction resolvase-like protein  51.39 
 
 
188 aa  121  4e-27  Frankia sp. EAN1pec  Bacteria  normal  0.0458229  normal  0.165399 
 
 
-
 
NC_013530  Xcel_1690  Holliday junction resolvase YqgF  50.62 
 
 
184 aa  120  7e-27  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.480738  n/a   
 
 
-
 
NC_013757  Gobs_3157  Holliday junction resolvase YqgF  51.06 
 
 
222 aa  118  3e-26  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.588989  n/a   
 
 
-
 
NC_008726  Mvan_2641  Holliday junction resolvase YqgF  49.03 
 
 
175 aa  117  4.9999999999999996e-26  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_17700  conserved hypothetical protein TIGR00250  46.43 
 
 
167 aa  114  6.9999999999999995e-25  Sanguibacter keddieii DSM 10542  Bacteria  hitchhiker  0.00726332  normal  0.269027 
 
 
-
 
NC_009338  Mflv_3762  Holliday junction resolvase YqgF  47.74 
 
 
175 aa  112  2.0000000000000002e-24  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.454353 
 
 
-
 
NC_013947  Snas_3877  Holliday junction resolvase YqgF  47.33 
 
 
151 aa  112  3e-24  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.843962  normal 
 
 
-
 
NC_009953  Sare_1820  Holliday junction resolvase YqgF  45.33 
 
 
153 aa  111  5e-24  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.0000610168 
 
 
-
 
NC_009380  Strop_1829  Holliday junction resolvase YqgF  45.33 
 
 
153 aa  110  7.000000000000001e-24  Salinispora tropica CNB-440  Bacteria  normal  0.0551936  normal 
 
 
-
 
NC_014158  Tpau_1976  Holliday junction resolvase YqgF  46.71 
 
 
161 aa  108  4.0000000000000004e-23  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.133397  n/a   
 
 
-
 
NC_013441  Gbro_2321  Holliday junction resolvase YqgF  51.03 
 
 
143 aa  105  2e-22  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_010655  Amuc_1191  Holliday junction resolvase YqgF  47.45 
 
 
141 aa  103  9e-22  Akkermansia muciniphila ATCC BAA-835  Bacteria  hitchhiker  0.0000237997  normal 
 
 
-
 
NC_009664  Krad_3031  Holliday junction resolvase YqgF  50.31 
 
 
188 aa  103  1e-21  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_3296  Holliday junction resolvase YqgF  48.05 
 
 
169 aa  100  6e-21  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.000134676  normal  0.0641237 
 
 
-
 
NC_013174  Jden_1350  Holliday junction resolvase YqgF  40.72 
 
 
167 aa  99  2e-20  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_009565  TBFG_12575  Holliday junction resolvase-like protein  45.77 
 
 
170 aa  97.8  6e-20  Mycobacterium tuberculosis F11  Bacteria  hitchhiker  0.00396279  normal  0.126571 
 
 
-
 
NC_013159  Svir_15280  conserved hypothetical protein TIGR00250  49.3 
 
 
154 aa  95.9  2e-19  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.0307172  normal  0.652486 
 
 
-
 
NC_008347  Mmar10_1708  Holliday junction resolvase YqgF  41.96 
 
 
151 aa  93.2  1e-18  Maricaulis maris MCS10  Bacteria  normal  normal  0.180151 
 
 
-
 
NC_013093  Amir_5264  Holliday junction resolvase YqgF  47.18 
 
 
170 aa  91.3  5e-18  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_1942  Holliday junction resolvase-like protein  39.86 
 
 
139 aa  90.9  6e-18  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_1969  Holliday junction resolvase-like protein  39.86 
 
 
139 aa  90.9  6e-18  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.0212683 
 
 
-
 
NC_013525  Tter_0088  Holliday junction resolvase YqgF  41.96 
 
 
149 aa  90.9  6e-18  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008541  Arth_2277  Holliday junction resolvase YqgF  40.38 
 
 
199 aa  90.9  8e-18  Arthrobacter sp. FB24  Bacteria  normal  0.117352  n/a   
 
 
-
 
NC_009952  Dshi_1064  Holliday junction resolvase-like protein  41.1 
 
 
163 aa  89.7  1e-17  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.282287  normal 
 
 
-
 
NC_009523  RoseRS_3225  Holliday junction resolvase YqgF  40.43 
 
 
141 aa  89.7  1e-17  Roseiflexus sp. RS-1  Bacteria  normal  0.387387  normal 
 
 
-
 
NC_008686  Pden_0510  Holliday junction resolvase-like protein  42.38 
 
 
158 aa  89  2e-17  Paracoccus denitrificans PD1222  Bacteria  normal  0.556579  normal 
 
 
-
 
NC_010511  M446_4344  Holliday junction resolvase YqgF  43.17 
 
 
168 aa  87.8  6e-17  Methylobacterium sp. 4-46  Bacteria  normal  0.892789  normal  0.367855 
 
 
-
 
NC_008044  TM1040_0967  Holliday junction resolvase-like protein  40.71 
 
 
157 aa  87.8  6e-17  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_4721  Holliday junction resolvase-like protein  42.36 
 
 
161 aa  87.4  8e-17  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007406  Nwi_2004  Holliday junction resolvase-like protein  41.67 
 
 
163 aa  86.7  1e-16  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.166059  normal  0.662003 
 
 
-
 
NC_009719  Plav_2841  Holliday junction resolvase YqgF  40.85 
 
 
182 aa  86.7  1e-16  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.636675  normal  0.911101 
 
 
-
 
NC_011886  Achl_2014  Holliday junction resolvase YqgF  39.22 
 
 
207 aa  86.3  2e-16  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.00000000330035 
 
 
-
 
NC_007958  RPD_3023  Holliday junction resolvase-like protein  40.85 
 
 
160 aa  86.3  2e-16  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.438725  normal  0.394583 
 
 
-
 
NC_013440  Hoch_5401  Holliday junction resolvase YqgF  44.37 
 
 
139 aa  85.9  2e-16  Haliangium ochraceum DSM 14365  Bacteria  normal  0.616966  normal  0.68966 
 
 
-
 
NC_013169  Ksed_12520  conserved hypothetical protein TIGR00250  46.41 
 
 
161 aa  85.1  4e-16  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.101388  normal  0.418633 
 
 
-
 
NC_011729  PCC7424_3098  Holliday junction resolvase-like protein  35.92 
 
 
151 aa  85.1  4e-16  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_010320  Teth514_1491  Holliday junction resolvase-like protein  35.66 
 
 
139 aa  85.1  4e-16  Thermoanaerobacter sp. X514  Bacteria  unclonable  0.0000000000748947  n/a   
 
 
-
 
NC_011894  Mnod_3314  Holliday junction resolvase YqgF  41.73 
 
 
163 aa  84.7  5e-16  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_2739  Holliday junction resolvase YqgF  36.69 
 
 
137 aa  84.7  5e-16  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_008531  LEUM_0558  Holliday junction resolvase-like protein  35 
 
 
143 aa  84.7  5e-16  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_007964  Nham_2279  Holliday junction resolvase-like protein  41.26 
 
 
168 aa  84.3  6e-16  Nitrobacter hamburgensis X14  Bacteria  normal  0.273152  n/a   
 
 
-
 
NC_009720  Xaut_3922  Holliday junction resolvase YqgF  41.84 
 
 
176 aa  84.3  7e-16  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_0475  Holliday junction resolvase YqgF  40.27 
 
 
170 aa  84.3  7e-16  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.437798  normal  0.0955854 
 
 
-
 
NC_007778  RPB_2429  Holliday junction resolvase-like protein  40.14 
 
 
160 aa  84  8e-16  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.0446184 
 
 
-
 
NC_010816  BLD_0615  putative endonuclease for recombination  36.31 
 
 
152 aa  83.2  0.000000000000001  Bifidobacterium longum DJO10A  Bacteria  normal  0.105236  n/a   
 
 
-
 
NC_011831  Cagg_0094  Holliday junction resolvase YqgF  39.86 
 
 
142 aa  83.6  0.000000000000001  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.0018567  normal 
 
 
-
 
NC_007493  RSP_2684  Holliday junction resolvase-like protein  38.96 
 
 
160 aa  83.2  0.000000000000001  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.173322  n/a   
 
 
-
 
NC_009049  Rsph17029_1342  Holliday junction resolvase-like protein  38.96 
 
 
160 aa  83.2  0.000000000000001  Rhodobacter sphaeroides ATCC 17029  Bacteria  decreased coverage  0.00888056  normal  0.184568 
 
 
-
 
NC_009428  Rsph17025_1879  Holliday junction resolvase-like protein  40 
 
 
160 aa  83.2  0.000000000000001  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.620593  normal 
 
 
-
 
NC_007413  Ava_3804  Holliday junction resolvase-like protein  37.24 
 
 
151 aa  81.6  0.000000000000004  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0796335  normal 
 
 
-
 
NC_011004  Rpal_3523  Holliday junction resolvase-like protein  43.66 
 
 
160 aa  81.3  0.000000000000005  Rhodopseudomonas palustris TIE-1  Bacteria  hitchhiker  0.00889049  n/a   
 
 
-
 
NC_007644  Moth_1640  Holliday junction resolvase YqgF  42.45 
 
 
140 aa  80.9  0.000000000000006  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.278901  normal  0.163549 
 
 
-
 
NC_011830  Dhaf_3562  Holliday junction resolvase-like protein  35.97 
 
 
142 aa  80.9  0.000000000000007  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000000000000329746  n/a   
 
 
-
 
NC_012793  GWCH70_2488  Holliday junction resolvase YqgF  35.66 
 
 
138 aa  80.5  0.000000000000008  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.0000000680199  n/a   
 
 
-
 
NC_009767  Rcas_3713  Holliday junction resolvase YqgF  39.01 
 
 
146 aa  80.5  0.000000000000009  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0658941  hitchhiker  0.00476179 
 
 
-
 
NC_010184  BcerKBAB4_4233  Holliday junction resolvase-like protein  38.57 
 
 
137 aa  79.7  0.00000000000001  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.000272031  n/a   
 
 
-
 
NC_007643  Rru_A3178  Holliday junction resolvase YqgF  42.45 
 
 
161 aa  79.3  0.00000000000002  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.825708  n/a   
 
 
-
 
NC_008528  OEOE_1165  RNase H-like ribonuclease  32.87 
 
 
144 aa  79  0.00000000000002  Oenococcus oeni PSU-1  Bacteria  normal  0.345189  n/a   
 
 
-
 
NC_011899  Hore_05800  Holliday junction resolvase YqgF  37.32 
 
 
140 aa  79.7  0.00000000000002  Halothermothrix orenii H 168  Bacteria  normal  0.209228  n/a   
 
 
-
 
NC_011725  BCB4264_A4506  Holliday junction resolvase-like protein  37.32 
 
 
137 aa  78.6  0.00000000000003  Bacillus cereus B4264  Bacteria  normal  0.860088  n/a   
 
 
-
 
NC_003909  BCE_4469  Holliday junction resolvase-like protein  37.86 
 
 
137 aa  79  0.00000000000003  Bacillus cereus ATCC 10987  Bacteria  decreased coverage  0.000000240455  n/a   
 
 
-
 
NC_005945  BAS4282  Holliday junction resolvase-like protein  37.86 
 
 
137 aa  79  0.00000000000003  Bacillus anthracis str. Sterne  Bacteria  hitchhiker  0.000000036093  n/a   
 
 
-
 
NC_005957  BT9727_4119  Holliday junction resolvase-like protein  37.86 
 
 
137 aa  79  0.00000000000003  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  decreased coverage  3.61572e-18  n/a   
 
 
-
 
NC_006274  BCZK4130  Holliday junction resolvase-like protein  37.86 
 
 
137 aa  79  0.00000000000003  Bacillus cereus E33L  Bacteria  unclonable  0.000000000000238321  n/a   
 
 
-
 
NC_011772  BCG9842_B0730  Holliday junction resolvase-like protein  37.86 
 
 
137 aa  78.6  0.00000000000003  Bacillus cereus G9842  Bacteria  decreased coverage  0.0000000542239  normal 
 
 
-
 
NC_007530  GBAA_4614  Holliday junction resolvase-like protein  37.86 
 
 
137 aa  79  0.00000000000003  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  decreased coverage  0.0000000000846091  n/a   
 
 
-
 
NC_011773  BCAH820_4466  Holliday junction resolvase-like protein  37.86 
 
 
137 aa  79  0.00000000000003  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.0000283196 
 
 
-
 
NC_011658  BCAH187_A4519  Holliday junction resolvase-like protein  37.32 
 
 
137 aa  79  0.00000000000003  Bacillus cereus AH187  Bacteria  hitchhiker  0.000203205  n/a   
 
 
-
 
NC_013216  Dtox_2265  Holliday junction resolvase YqgF  38.85 
 
 
139 aa  78.2  0.00000000000004  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  hitchhiker  0.0000233904 
 
 
-
 
NC_008527  LACR_0138  Holliday junction resolvase-like protein  37.14 
 
 
143 aa  78.2  0.00000000000004  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  n/a   
 
 
-
 
NC_013171  Apre_0938  Holliday junction resolvase YqgF  34.51 
 
 
139 aa  78.6  0.00000000000004  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_010730  SYO3AOP1_0474  Holliday junction resolvase YqgF  32.85 
 
 
145 aa  77.8  0.00000000000006  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  hitchhiker  0.00800439  n/a   
 
 
-
 
NC_008312  Tery_4379  Holliday junction resolvase-like protein  34.75 
 
 
149 aa  77.8  0.00000000000006  Trichodesmium erythraeum IMS101  Bacteria  normal  0.556882  normal  0.251804 
 
 
-
 
NC_013515  Smon_0417  Holliday junction resolvase YqgF  32.87 
 
 
142 aa  77.8  0.00000000000006  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_013411  GYMC61_0964  Holliday junction resolvase YqgF  37.76 
 
 
138 aa  77  0.00000000000009  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011884  Cyan7425_2514  Holliday junction resolvase-like protein  35.46 
 
 
150 aa  77  0.0000000000001  Cyanothece sp. PCC 7425  Bacteria  normal  0.36708  normal 
 
 
-
 
NC_013522  Taci_1032  Holliday junction resolvase YqgF  35.25 
 
 
142 aa  77  0.0000000000001  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_009513  Lreu_0535  Holliday junction resolvase-like protein  33.33 
 
 
147 aa  77  0.0000000000001  Lactobacillus reuteri DSM 20016  Bacteria  hitchhiker  0.00000331559  n/a   
 
 
-
 
NC_008532  STER_1938  Holliday junction resolvase-like protein  33.57 
 
 
139 aa  75.9  0.0000000000002  Streptococcus thermophilus LMD-9  Bacteria  unclonable  0.0000000471473  n/a   
 
 
-
 
NC_011898  Ccel_2239  Holliday junction resolvase-like protein  30.71 
 
 
142 aa  75.5  0.0000000000003  Clostridium cellulolyticum H10  Bacteria  decreased coverage  0.0000140275  n/a   
 
 
-
 
NC_007925  RPC_2255  Holliday junction resolvase-like protein  41.55 
 
 
163 aa  75.1  0.0000000000003  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.86844  normal  0.55099 
 
 
-
 
NC_004116  SAG2090  Holliday junction resolvase-like protein  34.29 
 
 
136 aa  75.1  0.0000000000004  Streptococcus agalactiae 2603V/R  Bacteria  hitchhiker  0.000724166  n/a   
 
 
-
 
NC_012803  Mlut_12710  putative Holliday junction resolvase  44.38 
 
 
189 aa  74.7  0.0000000000004  Micrococcus luteus NCTC 2665  Bacteria  normal  0.84059  n/a   
 
 
-
 
NC_008346  Swol_0470  Holliday junction resolvase YqgF  35.51 
 
 
141 aa  74.7  0.0000000000005  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  unclonable  0.00000000599692  n/a   
 
 
-
 
NC_011661  Dtur_1024  Holliday junction resolvase YqgF  32.61 
 
 
141 aa  74.7  0.0000000000005  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
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