More than 300 homologs were found in PanDaTox collection
for query gene Tpau_1976 on replicon NC_014158
Organism: Tsukamurella paurometabola DSM 20162



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_014158  Tpau_1976  Holliday junction resolvase YqgF  100 
 
 		 161 aa  313  5e-85  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.133397  n/a   
 
 
-
 
NC_009338  Mflv_3762  Holliday junction resolvase YqgF  58.06 
 
 		 175 aa  149  1e-35  Mycobacterium gilvum PYR-GCK  Bacteria  normal  1  normal  0.454353 
 
 
-
 
NC_008726  Mvan_2641  Holliday junction resolvase YqgF  59.48 
 
 		 175 aa  148  3e-35  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008146  Mmcs_2347  Holliday junction resolvase-like protein  56.76 
 
 		 169 aa  144  6e-34  Mycobacterium sp. MCS  Bacteria  normal  0.502005  n/a   
 
 
-
 
NC_008705  Mkms_2394  Holliday junction resolvase-like protein  56.76 
 
 		 169 aa  144  6e-34  Mycobacterium sp. KMS  Bacteria  normal  1  normal  0.345644 
 
 
-
 
NC_009077  Mjls_2388  Holliday junction resolvase-like protein  56.76 
 
 		 169 aa  142  2e-33  Mycobacterium sp. JLS  Bacteria  normal  1  normal  0.0472019 
 
 
-
 
NC_013441  Gbro_2321  Holliday junction resolvase YqgF  56.94 
 
 		 143 aa  140  6e-33  Gordonia bronchialis DSM 43247  Bacteria  normal  1  n/a   
 
 
-
 
NC_009565  TBFG_12575  Holliday junction resolvase-like protein  59.74 
 
 		 170 aa  138  3e-32  Mycobacterium tuberculosis F11  Bacteria  hitchhiker  0.00396279  normal  0.126571 
 
 
-
 
NC_013595  Sros_6093  endonuclease involved in recombination-like protein  53.02 
 
 		 163 aa  134  7.000000000000001e-31  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0746227  normal  1 
 
 
-
 
NC_009380  Strop_1829  Holliday junction resolvase YqgF  49.02 
 
 		 153 aa  129  1.0000000000000001e-29  Salinispora tropica CNB-440  Bacteria  normal  0.0551936  normal  1 
 
 
-
 
NC_009953  Sare_1820  Holliday junction resolvase YqgF  48.34 
 
 		 153 aa  128  3e-29  Salinispora arenicola CNS-205  Bacteria  normal  1  hitchhiker  0.0000610168 
 
 
-
 
NC_013757  Gobs_3157  Holliday junction resolvase YqgF  50.36 
 
 		 222 aa  127  6e-29  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.588989  n/a   
 
 
-
 
NC_013947  Snas_3877  Holliday junction resolvase YqgF  50 
 
 		 151 aa  126  1.0000000000000001e-28  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.843962  normal  1 
 
 
-
 
NC_008578  Acel_1329  Holliday junction resolvase YqgF  49.35 
 
 		 173 aa  119  1.9999999999999998e-26  Acidothermus cellulolyticus 11B  Bacteria  normal  0.0531797  normal  0.27422 
 
 
-
 
NC_014165  Tbis_2046  Holliday junction resolvase YqgF  52.05 
 
 		 163 aa  114  6e-25  Thermobispora bispora DSM 43833  Bacteria  normal  0.0425259  normal  1 
 
 
-
 
NC_013169  Ksed_12520  conserved hypothetical protein TIGR00250  53.24 
 
 		 161 aa  114  6.9999999999999995e-25  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.101388  normal  0.418633 
 
 
-
 
NC_009921  Franean1_1695  Holliday junction resolvase-like protein  47.55 
 
 		 188 aa  112  1.0000000000000001e-24  Frankia sp. EAN1pec  Bacteria  normal  0.0458229  normal  0.165399 
 
 
-
 
NC_008541  Arth_2277  Holliday junction resolvase YqgF  44.97 
 
 		 199 aa  113  1.0000000000000001e-24  Arthrobacter sp. FB24  Bacteria  normal  0.117352  n/a   
 
 
-
 
NC_009523  RoseRS_3225  Holliday junction resolvase YqgF  42.36 
 
 		 141 aa  112  2.0000000000000002e-24  Roseiflexus sp. RS-1  Bacteria  normal  0.387387  normal  1 
 
 
-
 
NC_013093  Amir_5264  Holliday junction resolvase YqgF  52.14 
 
 		 170 aa  111  4.0000000000000004e-24  Actinosynnema mirum DSM 43827  Bacteria  normal  1  n/a   
 
 
-
 
NC_013530  Xcel_1690  Holliday junction resolvase YqgF  48.37 
 
 		 184 aa  109  1.0000000000000001e-23  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.480738  n/a   
 
 
-
 
NC_013159  Svir_15280  conserved hypothetical protein TIGR00250  48.94 
 
 		 154 aa  110  1.0000000000000001e-23  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.0307172  normal  0.652486 
 
 
-
 
NC_013131  Caci_2379  Holliday junction resolvase-like protein  51.03 
 
 		 171 aa  108  2.0000000000000002e-23  Catenulispora acidiphila DSM 44928  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014210  Ndas_3074  Holliday junction resolvase YqgF  46.71 
 
 		 161 aa  108  4.0000000000000004e-23  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  1  normal  0.459764 
 
 
-
 
NC_013510  Tcur_2136  Holliday junction resolvase YqgF  51.56 
 
 		 152 aa  108  4.0000000000000004e-23  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.000271405  n/a   
 
 
-
 
NC_013172  Bfae_16350  conserved hypothetical protein TIGR00250  45.27 
 
 		 181 aa  107  7.000000000000001e-23  Brachybacterium faecium DSM 4810  Bacteria  normal  1  n/a   
 
 
-
 
NC_008699  Noca_2408  Holliday junction resolvase-like protein  49.66 
 
 		 156 aa  106  1e-22  Nocardioides sp. JS614  Bacteria  normal  0.332292  n/a   
 
 
-
 
NC_012669  Bcav_2015  Holliday junction resolvase YqgF  45 
 
 		 163 aa  105  3e-22  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.756916  normal  0.07881 
 
 
-
 
NC_007777  Francci3_3213  Holliday junction resolvase-like protein  44.06 
 
 		 202 aa  105  3e-22  Frankia sp. CcI3  Bacteria  normal  0.0825611  normal  1 
 
 
-
 
NC_014151  Cfla_1819  Holliday junction resolvase YqgF  44.44 
 
 		 190 aa  105  3e-22  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0503115  normal  1 
 
 
-
 
NC_011886  Achl_2014  Holliday junction resolvase YqgF  40.41 
 
 		 207 aa  105  3e-22  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.00000000330035 
 
 
-
 
NC_013174  Jden_1350  Holliday junction resolvase YqgF  45.62 
 
 		 167 aa  105  3e-22  Jonesia denitrificans DSM 20603  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008527  LACR_0138  Holliday junction resolvase-like protein  41.43 
 
 		 143 aa  105  3e-22  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  1  n/a   
 
 
-
 
NC_009767  Rcas_3713  Holliday junction resolvase YqgF  40.97 
 
 		 146 aa  103  8e-22  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0658941  hitchhiker  0.00476179 
 
 
-
 
NC_009972  Haur_3633  Holliday junction resolvase YqgF  38.36 
 
 		 158 aa  100  1e-20  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  1  n/a   
 
 
-
 
NC_011145  AnaeK_2633  Holliday junction resolvase-like protein  42.96 
 
 		 137 aa  96.7  1e-19  Anaeromyxobacter sp. K  Bacteria  normal  0.854397  n/a   
 
 
-
 
NC_011891  A2cp1_2727  Holliday junction resolvase-like protein  42.96 
 
 		 137 aa  96.3  2e-19  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_010655  Amuc_1191  Holliday junction resolvase YqgF  43.8 
 
 		 141 aa  95.1  3e-19  Akkermansia muciniphila ATCC BAA-835  Bacteria  hitchhiker  0.0000237997  normal  1 
 
 
-
 
NC_007760  Adeh_1232  Holliday junction resolvase-like protein  42.96 
 
 		 137 aa  95.1  3e-19  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  1  n/a   
 
 
-
 
NC_013521  Sked_17700  conserved hypothetical protein TIGR00250  44.24 
 
 		 167 aa  95.1  3e-19  Sanguibacter keddieii DSM 10542  Bacteria  hitchhiker  0.00726332  normal  0.269027 
 
 
-
 
NC_010730  SYO3AOP1_0474  Holliday junction resolvase YqgF  40.29 
 
 		 145 aa  94  7e-19  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  hitchhiker  0.00800439  n/a   
 
 
-
 
NC_013235  Namu_3296  Holliday junction resolvase YqgF  43.87 
 
 		 169 aa  93.6  1e-18  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.000134676  normal  0.0641237 
 
 
-
 
NC_013385  Adeg_1438  Holliday junction resolvase YqgF  40.28 
 
 		 146 aa  92.4  2e-18  Ammonifex degensii KC4  Bacteria  normal  0.0335959  n/a   
 
 
-
 
NC_013171  Apre_0938  Holliday junction resolvase YqgF  36.62 
 
 		 139 aa  90.9  7e-18  Anaerococcus prevotii DSM 20548  Bacteria  normal  1  n/a   
 
 
-
 
NC_011898  Ccel_2239  Holliday junction resolvase-like protein  33.81 
 
 		 142 aa  90.5  8e-18  Clostridium cellulolyticum H10  Bacteria  decreased coverage  0.0000140275  n/a   
 
 
-
 
NC_013203  Apar_0458  Holliday junction resolvase YqgF  38.73 
 
 		 140 aa  90.5  9e-18  Atopobium parvulum DSM 20469  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010320  Teth514_1491  Holliday junction resolvase-like protein  35.92 
 
 		 139 aa  89.7  1e-17  Thermoanaerobacter sp. X514  Bacteria  unclonable  0.0000000000748947  n/a   
 
 
-
 
NC_011831  Cagg_0094  Holliday junction resolvase YqgF  41.01 
 
 		 142 aa  90.1  1e-17  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.0018567  normal  1 
 
 
-
 
NC_008530  LGAS_0423  Holliday junction resolvase-like protein  40.69 
 
 		 143 aa  90.5  1e-17  Lactobacillus gasseri ATCC 33323  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007333  Tfu_2069  Holliday junction resolvase-like protein  49.66 
 
 		 159 aa  89.4  2e-17  Thermobifida fusca YX  Bacteria  normal  0.0705886  n/a   
 
 
-
 
NC_013440  Hoch_5401  Holliday junction resolvase YqgF  40.28 
 
 		 139 aa  88.6  3e-17  Haliangium ochraceum DSM 14365  Bacteria  normal  0.616966  normal  0.68966 
 
 
-
 
NC_007614  Nmul_A2479  Holliday junction resolvase-like protein  36.88 
 
 		 151 aa  88.2  4e-17  Nitrosospira multiformis ATCC 25196  Bacteria  normal  1  n/a   
 
 
-
 
NC_011661  Dtur_1024  Holliday junction resolvase YqgF  34.78 
 
 		 141 aa  87.8  5e-17  Dictyoglomus turgidum DSM 6724  Bacteria  normal  1  n/a   
 
 
-
 
NC_008312  Tery_4379  Holliday junction resolvase-like protein  35.25 
 
 		 149 aa  87.8  6e-17  Trichodesmium erythraeum IMS101  Bacteria  normal  0.556882  normal  0.251804 
 
 
-
 
NC_009675  Anae109_2535  Holliday junction resolvase-like protein  41.84 
 
 		 137 aa  87.8  6e-17  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  1  normal  0.52249 
 
 
-
 
NC_013204  Elen_2554  Holliday junction resolvase YqgF  39.44 
 
 		 138 aa  87.4  8e-17  Eggerthella lenta DSM 2243  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011726  PCC8801_1942  Holliday junction resolvase-like protein  36.81 
 
 		 139 aa  86.7  1e-16  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011729  PCC7424_3098  Holliday junction resolvase-like protein  33.78 
 
 		 151 aa  86.7  1e-16  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  1 
 
 
-
 
NC_013161  Cyan8802_1969  Holliday junction resolvase-like protein  36.81 
 
 		 139 aa  86.7  1e-16  Cyanothece sp. PCC 8802  Bacteria  normal  1  normal  0.0212683 
 
 
-
 
NC_007644  Moth_1640  Holliday junction resolvase YqgF  40.58 
 
 		 140 aa  86.7  1e-16  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.278901  normal  0.163549 
 
 
-
 
NC_013165  Shel_07810  conserved hypothetical protein TIGR00250  38.57 
 
 		 138 aa  86.7  1e-16  Slackia heliotrinireducens DSM 20476  Bacteria  normal  1  normal  0.0182311 
 
 
-
 
NC_008009  Acid345_0556  Holliday junction resolvase YqgF  39.87 
 
 		 153 aa  85.9  2e-16  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.901255  normal  0.0480752 
 
 
-
 
NC_010816  BLD_0615  putative endonuclease for recombination  35.37 
 
 		 152 aa  85.5  3e-16  Bifidobacterium longum DJO10A  Bacteria  normal  0.105236  n/a   
 
 
-
 
NC_009012  Cthe_0153  Holliday junction resolvase-like protein  35.62 
 
 		 141 aa  85.5  3e-16  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.0185653  n/a   
 
 
-
 
NC_008044  TM1040_0967  Holliday junction resolvase-like protein  39.01 
 
 		 157 aa  85.5  3e-16  Ruegeria sp. TM1040  Bacteria  normal  1  normal  1 
 
 
-
 
NC_003909  BCE_4469  Holliday junction resolvase-like protein  38.73 
 
 		 137 aa  84.7  4e-16  Bacillus cereus ATCC 10987  Bacteria  decreased coverage  0.000000240455  n/a   
 
 
-
 
NC_005945  BAS4282  Holliday junction resolvase-like protein  38.73 
 
 		 137 aa  84.7  4e-16  Bacillus anthracis str. Sterne  Bacteria  hitchhiker  0.000000036093  n/a   
 
 
-
 
NC_005957  BT9727_4119  Holliday junction resolvase-like protein  38.73 
 
 		 137 aa  84.7  4e-16  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  decreased coverage  3.61572e-18  n/a   
 
 
-
 
NC_006274  BCZK4130  Holliday junction resolvase-like protein  38.73 
 
 		 137 aa  84.7  4e-16  Bacillus cereus E33L  Bacteria  unclonable  0.000000000000238321  n/a   
 
 
-
 
NC_007413  Ava_3804  Holliday junction resolvase-like protein  36.36 
 
 		 151 aa  85.1  4e-16  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0796335  normal  1 
 
 
-
 
NC_011773  BCAH820_4466  Holliday junction resolvase-like protein  38.73 
 
 		 137 aa  84.7  4e-16  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.0000283196 
 
 
-
 
NC_007530  GBAA_4614  Holliday junction resolvase-like protein  38.73 
 
 		 137 aa  84.7  4e-16  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  decreased coverage  0.0000000000846091  n/a   
 
 
-
 
NC_008261  CPF_2031  Holliday junction resolvase-like protein  34.78 
 
 		 137 aa  85.1  4e-16  Clostridium perfringens ATCC 13124  Bacteria  normal  1  n/a   
 
 
-
 
NC_008262  CPR_1748  Holliday junction resolvase-like protein  34.78 
 
 		 137 aa  85.1  4e-16  Clostridium perfringens SM101  Bacteria  normal  1  n/a   
 
 
-
 
NC_011772  BCG9842_B0730  Holliday junction resolvase-like protein  38.73 
 
 		 137 aa  84.7  5e-16  Bacillus cereus G9842  Bacteria  decreased coverage  0.0000000542239  normal  1 
 
 
-
 
NC_011725  BCB4264_A4506  Holliday junction resolvase-like protein  38.73 
 
 		 137 aa  84.7  5e-16  Bacillus cereus B4264  Bacteria  normal  0.860088  n/a   
 
 
-
 
NC_010184  BcerKBAB4_4233  Holliday junction resolvase-like protein  38.03 
 
 		 137 aa  84.3  6e-16  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.000272031  n/a   
 
 
-
 
NC_011658  BCAH187_A4519  Holliday junction resolvase-like protein  38.73 
 
 		 137 aa  84.3  7e-16  Bacillus cereus AH187  Bacteria  hitchhiker  0.000203205  n/a   
 
 
-
 
NC_013721  HMPREF0424_0376  RNAse YqgF  35.42 
 
 		 152 aa  83.2  0.000000000000001  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  1 
 
 
-
 
NC_007298  Daro_3892  Holliday junction resolvase-like protein  34.03 
 
 		 146 aa  82.4  0.000000000000002  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007958  RPD_3023  Holliday junction resolvase-like protein  39.29 
 
 		 160 aa  82.4  0.000000000000002  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.438725  normal  0.394583 
 
 
-
 
NC_009674  Bcer98_3099  Holliday junction resolvase-like protein  36.62 
 
 		 137 aa  82.8  0.000000000000002  Bacillus cytotoxicus NVH 391-98  Bacteria  hitchhiker  0.00212776  n/a   
 
 
-
 
NC_010001  Cphy_2297  Holliday junction resolvase YqgF  37.59 
 
 		 150 aa  83.2  0.000000000000002  Clostridium phytofermentans ISDg  Bacteria  normal  0.470334  n/a   
 
 
-
 
NC_013411  GYMC61_0964  Holliday junction resolvase YqgF  37.76 
 
 		 138 aa  82.4  0.000000000000003  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007947  Mfla_2100  Holliday junction resolvase-like protein  32.87 
 
 		 146 aa  81.6  0.000000000000004  Methylobacillus flagellatus KT  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009952  Dshi_1064  Holliday junction resolvase-like protein  40.27 
 
 		 163 aa  81.6  0.000000000000004  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.282287  normal  1 
 
 
-
 
NC_012793  GWCH70_2488  Holliday junction resolvase YqgF  36.36 
 
 		 138 aa  81.3  0.000000000000005  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.0000000680199  n/a   
 
 
-
 
NC_013517  Sterm_2739  Holliday junction resolvase YqgF  36.62 
 
 		 137 aa  80.9  0.000000000000006  Sebaldella termitidis ATCC 33386  Bacteria  normal  1  n/a   
 
 
-
 
NC_009253  Dred_0775  Holliday junction resolvase YqgF  35.51 
 
 		 137 aa  80.9  0.000000000000008  Desulfotomaculum reducens MI-1  Bacteria  unclonable  0.00000000463594  n/a   
 
 
-
 
NC_011830  Dhaf_3562  Holliday junction resolvase-like protein  37.59 
 
 		 142 aa  80.5  0.000000000000009  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000000000000329746  n/a   
 
 
-
 
NC_013522  Taci_1032  Holliday junction resolvase YqgF  36.62 
 
 		 142 aa  80.1  0.00000000000001  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  1  n/a   
 
 
-
 
NC_011884  Cyan7425_2514  Holliday junction resolvase-like protein  34.53 
 
 		 150 aa  79.7  0.00000000000001  Cyanothece sp. PCC 7425  Bacteria  normal  0.36708  normal  1 
 
 
-
 
NC_008686  Pden_0510  Holliday junction resolvase-like protein  38.46 
 
 		 158 aa  80.1  0.00000000000001  Paracoccus denitrificans PD1222  Bacteria  normal  0.556579  normal  1 
 
 
-
 
NC_002950  PG2202  Holliday junction resolvase-like protein  36.3 
 
 		 138 aa  79.3  0.00000000000002  Porphyromonas gingivalis W83  Bacteria  n/a    normal  1 
 
 
-
 
NC_011899  Hore_05800  Holliday junction resolvase YqgF  37.06 
 
 		 140 aa  79.7  0.00000000000002  Halothermothrix orenii H 168  Bacteria  normal  0.209228  n/a   
 
 
-
 
NC_013552  DhcVS_51  Holliday junction resolvase  38.24 
 
 		 133 aa  78.6  0.00000000000003  Dehalococcoides sp. VS  Bacteria  normal  0.444327  n/a   
 
 
-
 
NC_009485  BBta_4721  Holliday junction resolvase-like protein  39.72 
 
 		 161 aa  79  0.00000000000003  Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008532  STER_1938  Holliday junction resolvase-like protein  32.62 
 
 		 139 aa  79  0.00000000000003  Streptococcus thermophilus LMD-9  Bacteria  unclonable  0.0000000471473  n/a   
 
 
-
 
NC_009049  Rsph17029_1342  Holliday junction resolvase-like protein  41.04 
 
 		 160 aa  78.2  0.00000000000005  Rhodobacter sphaeroides ATCC 17029  Bacteria  decreased coverage  0.00888056  normal  0.184568 
 
 
-
 
NC_013205  Aaci_2024  Holliday junction resolvase YqgF  38.85 
 
 		 144 aa  78.2  0.00000000000005  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.330713  n/a   
 
 
-
 
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