More than 300 homologs were found in PanDaTox collection
for query gene TM1040_0967 on replicon NC_008044
Organism: Ruegeria sp. TM1040



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_008044  TM1040_0967  Holliday junction resolvase-like protein  100 
 
 		 157 aa  316  7e-86  Ruegeria sp. TM1040  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009428  Rsph17025_1879  Holliday junction resolvase-like protein  74.17 
 
 		 160 aa  222  1e-57  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.620593  normal  1 
 
 
-
 
NC_007493  RSP_2684  Holliday junction resolvase-like protein  73.51 
 
 		 160 aa  219  8e-57  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.173322  n/a   
 
 
-
 
NC_009049  Rsph17029_1342  Holliday junction resolvase-like protein  73.51 
 
 		 160 aa  219  8e-57  Rhodobacter sphaeroides ATCC 17029  Bacteria  decreased coverage  0.00888056  normal  0.184568 
 
 
-
 
NC_008686  Pden_0510  Holliday junction resolvase-like protein  70.78 
 
 		 158 aa  215  1e-55  Paracoccus denitrificans PD1222  Bacteria  normal  0.556579  normal  1 
 
 
-
 
NC_009952  Dshi_1064  Holliday junction resolvase-like protein  69.68 
 
 		 163 aa  214  4e-55  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.282287  normal  1 
 
 
-
 
NC_007802  Jann_2181  Holliday junction resolvase YqgF  68.75 
 
 		 145 aa  197  6e-50  Jannaschia sp. CCS1  Bacteria  normal  0.659798  normal  1 
 
 
-
 
NC_009719  Plav_2841  Holliday junction resolvase YqgF  62.5 
 
 		 182 aa  181  2.0000000000000003e-45  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.636675  normal  0.911101 
 
 
-
 
NC_009485  BBta_4721  Holliday junction resolvase-like protein  64.19 
 
 		 161 aa  177  4.999999999999999e-44  Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007964  Nham_2279  Holliday junction resolvase-like protein  64.38 
 
 		 168 aa  176  1e-43  Nitrobacter hamburgensis X14  Bacteria  normal  0.273152  n/a   
 
 
-
 
NC_007778  RPB_2429  Holliday junction resolvase-like protein  62.68 
 
 		 160 aa  174  3e-43  Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  0.0446184 
 
 
-
 
NC_007406  Nwi_2004  Holliday junction resolvase-like protein  66.2 
 
 		 163 aa  173  8e-43  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.166059  normal  0.662003 
 
 
-
 
NC_007958  RPD_3023  Holliday junction resolvase-like protein  62.68 
 
 		 160 aa  172  9.999999999999999e-43  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.438725  normal  0.394583 
 
 
-
 
NC_010338  Caul_1518  Holliday junction resolvase YqgF  57.72 
 
 		 164 aa  167  4e-41  Caulobacter sp. K31  Bacteria  normal  1  normal  0.470214 
 
 
-
 
NC_008254  Meso_1361  Holliday junction resolvase YqgF  59.42 
 
 		 160 aa  166  1e-40  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_007643  Rru_A3178  Holliday junction resolvase YqgF  57.24 
 
 		 161 aa  165  2e-40  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.825708  n/a   
 
 
-
 
NC_009720  Xaut_3922  Holliday junction resolvase YqgF  58.67 
 
 		 176 aa  166  2e-40  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010505  Mrad2831_0475  Holliday junction resolvase YqgF  55.19 
 
 		 170 aa  163  6.9999999999999995e-40  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.437798  normal  0.0955854 
 
 
-
 
NC_011369  Rleg2_1518  Holliday junction resolvase-like protein  55.86 
 
 		 163 aa  161  3e-39  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  0.793177 
 
 
-
 
NC_012850  Rleg_1714  Holliday junction resolvase-like protein  56.55 
 
 		 164 aa  161  3e-39  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  1  normal  0.396791 
 
 
-
 
NC_009636  Smed_0941  Holliday junction resolvase-like protein  56.16 
 
 		 165 aa  161  4.0000000000000004e-39  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  0.22726 
 
 
-
 
NC_008048  Sala_0925  Holliday junction resolvase YqgF  55.63 
 
 		 152 aa  160  6e-39  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.233016  normal  1 
 
 
-
 
NC_011004  Rpal_3523  Holliday junction resolvase-like protein  64.08 
 
 		 160 aa  160  8.000000000000001e-39  Rhodopseudomonas palustris TIE-1  Bacteria  hitchhiker  0.00889049  n/a   
 
 
-
 
NC_011666  Msil_0742  Holliday junction resolvase-like protein  55.07 
 
 		 161 aa  159  1e-38  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0120989 
 
 
-
 
NC_009668  Oant_3664  Holliday junction resolvase-like protein  53.29 
 
 		 165 aa  157  6e-38  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  1  n/a   
 
 
-
 
NC_011989  Avi_1768  Holliday junction resolvase-like protein  53.64 
 
 		 158 aa  157  8e-38  Agrobacterium vitis S4  Bacteria  normal  1  n/a   
 
 
-
 
NC_007925  RPC_2255  Holliday junction resolvase-like protein  61.27 
 
 		 163 aa  155  2e-37  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.86844  normal  0.55099 
 
 
-
 
NC_010725  Mpop_3519  Holliday junction resolvase YqgF  55.63 
 
 		 165 aa  155  2e-37  Methylobacterium populi BJ001  Bacteria  normal  0.432695  normal  1 
 
 
-
 
NC_010511  M446_4344  Holliday junction resolvase YqgF  59.54 
 
 		 168 aa  154  3e-37  Methylobacterium sp. 4-46  Bacteria  normal  0.892789  normal  0.367855 
 
 
-
 
NC_011894  Mnod_3314  Holliday junction resolvase YqgF  58.78 
 
 		 163 aa  154  4e-37  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_004311  BRA0597  Holliday junction resolvase-like protein  52.67 
 
 		 162 aa  153  7e-37  Brucella suis 1330  Bacteria  normal  1  n/a   
 
 
-
 
NC_009504  BOV_A0563  Holliday junction resolvase-like protein  52 
 
 		 162 aa  152  2e-36  Brucella ovis ATCC 25840  Bacteria  normal  1  n/a   
 
 
-
 
NC_009511  Swit_0601  Holliday junction resolvase YqgF  52.32 
 
 		 151 aa  152  2e-36  Sphingomonas wittichii RW1  Bacteria  normal  1  normal  0.613999 
 
 
-
 
NC_010581  Bind_1895  Holliday junction resolvase-like protein  53.24 
 
 		 165 aa  151  2.9999999999999998e-36  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.273411  normal  1 
 
 
-
 
NC_011757  Mchl_3643  Holliday junction resolvase YqgF  57.89 
 
 		 165 aa  149  2e-35  Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  0.724014 
 
 
-
 
NC_010172  Mext_3319  Holliday junction resolvase YqgF  57.89 
 
 		 160 aa  149  2e-35  Methylobacterium extorquens PA1  Bacteria  normal  0.587532  normal  0.657687 
 
 
-
 
NC_008783  BARBAKC583_0838  hypothetical protein  51.08 
 
 		 161 aa  148  3e-35  Bartonella bacilliformis KC583  Bacteria  normal  0.115372  n/a   
 
 
-
 
NC_007644  Moth_1640  Holliday junction resolvase YqgF  54.89 
 
 		 140 aa  143  1e-33  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.278901  normal  0.163549 
 
 
-
 
NC_008347  Mmar10_1708  Holliday junction resolvase YqgF  53.28 
 
 		 151 aa  141  4e-33  Maricaulis maris MCS10  Bacteria  normal  1  normal  0.180151 
 
 
-
 
NC_007794  Saro_0906  Holliday junction resolvase-like protein  53.02 
 
 		 155 aa  140  5e-33  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.167999  n/a   
 
 
-
 
NC_009253  Dred_0775  Holliday junction resolvase YqgF  51.15 
 
 		 137 aa  134  4e-31  Desulfotomaculum reducens MI-1  Bacteria  unclonable  0.00000000463594  n/a   
 
 
-
 
NC_011658  BCAH187_A4519  Holliday junction resolvase-like protein  50 
 
 		 137 aa  133  8e-31  Bacillus cereus AH187  Bacteria  hitchhiker  0.000203205  n/a   
 
 
-
 
NC_011830  Dhaf_3562  Holliday junction resolvase-like protein  49.63 
 
 		 142 aa  133  9.999999999999999e-31  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000000000000329746  n/a   
 
 
-
 
NC_011773  BCAH820_4466  Holliday junction resolvase-like protein  49.63 
 
 		 137 aa  132  1.9999999999999998e-30  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.0000283196 
 
 
-
 
NC_003909  BCE_4469  Holliday junction resolvase-like protein  49.63 
 
 		 137 aa  132  1.9999999999999998e-30  Bacillus cereus ATCC 10987  Bacteria  decreased coverage  0.000000240455  n/a   
 
 
-
 
NC_005945  BAS4282  Holliday junction resolvase-like protein  49.63 
 
 		 137 aa  132  1.9999999999999998e-30  Bacillus anthracis str. Sterne  Bacteria  hitchhiker  0.000000036093  n/a   
 
 
-
 
NC_005957  BT9727_4119  Holliday junction resolvase-like protein  49.63 
 
 		 137 aa  132  1.9999999999999998e-30  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  decreased coverage  3.61572e-18  n/a   
 
 
-
 
NC_006274  BCZK4130  Holliday junction resolvase-like protein  49.63 
 
 		 137 aa  132  1.9999999999999998e-30  Bacillus cereus E33L  Bacteria  unclonable  0.000000000000238321  n/a   
 
 
-
 
NC_007530  GBAA_4614  Holliday junction resolvase-like protein  49.63 
 
 		 137 aa  132  1.9999999999999998e-30  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  decreased coverage  0.0000000000846091  n/a   
 
 
-
 
NC_011725  BCB4264_A4506  Holliday junction resolvase-like protein  49.26 
 
 		 137 aa  130  5e-30  Bacillus cereus B4264  Bacteria  normal  0.860088  n/a   
 
 
-
 
NC_011899  Hore_05800  Holliday junction resolvase YqgF  50.38 
 
 		 140 aa  130  6e-30  Halothermothrix orenii H 168  Bacteria  normal  0.209228  n/a   
 
 
-
 
NC_010184  BcerKBAB4_4233  Holliday junction resolvase-like protein  49.63 
 
 		 137 aa  130  1.0000000000000001e-29  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.000272031  n/a   
 
 
-
 
NC_008261  CPF_2031  Holliday junction resolvase-like protein  45.86 
 
 		 137 aa  129  1.0000000000000001e-29  Clostridium perfringens ATCC 13124  Bacteria  normal  1  n/a   
 
 
-
 
NC_008262  CPR_1748  Holliday junction resolvase-like protein  45.86 
 
 		 137 aa  129  1.0000000000000001e-29  Clostridium perfringens SM101  Bacteria  normal  1  n/a   
 
 
-
 
NC_011772  BCG9842_B0730  Holliday junction resolvase-like protein  48.89 
 
 		 137 aa  128  3e-29  Bacillus cereus G9842  Bacteria  decreased coverage  0.0000000542239  normal  1 
 
 
-
 
NC_008346  Swol_0470  Holliday junction resolvase YqgF  48.85 
 
 		 141 aa  128  3e-29  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  unclonable  0.00000000599692  n/a   
 
 
-
 
NC_008531  LEUM_0558  Holliday junction resolvase-like protein  48.53 
 
 		 143 aa  125  2.0000000000000002e-28  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  1  n/a   
 
 
-
 
NC_012793  GWCH70_2488  Holliday junction resolvase YqgF  48.89 
 
 		 138 aa  124  3e-28  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.0000000680199  n/a   
 
 
-
 
NC_009674  Bcer98_3099  Holliday junction resolvase-like protein  46.67 
 
 		 137 aa  125  3e-28  Bacillus cytotoxicus NVH 391-98  Bacteria  hitchhiker  0.00212776  n/a   
 
 
-
 
NC_010320  Teth514_1491  Holliday junction resolvase-like protein  45.59 
 
 		 139 aa  124  7e-28  Thermoanaerobacter sp. X514  Bacteria  unclonable  0.0000000000748947  n/a   
 
 
-
 
NC_013216  Dtox_2265  Holliday junction resolvase YqgF  50 
 
 		 139 aa  122  1e-27  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  1  hitchhiker  0.0000233904 
 
 
-
 
NC_009484  Acry_0873  Holliday junction resolvase YqgF  43.33 
 
 		 158 aa  121  3e-27  Acidiphilium cryptum JF-5  Bacteria  normal  0.205729  n/a   
 
 
-
 
NC_008532  STER_1938  Holliday junction resolvase-like protein  44.2 
 
 		 139 aa  120  6e-27  Streptococcus thermophilus LMD-9  Bacteria  unclonable  0.0000000471473  n/a   
 
 
-
 
NC_013411  GYMC61_0964  Holliday junction resolvase YqgF  48.91 
 
 		 138 aa  119  1.9999999999999998e-26  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008528  OEOE_1165  RNase H-like ribonuclease  46.72 
 
 		 144 aa  119  1.9999999999999998e-26  Oenococcus oeni PSU-1  Bacteria  normal  0.345189  n/a   
 
 
-
 
NC_011365  Gdia_3370  Holliday junction resolvase YqgF  46.97 
 
 		 154 aa  118  3.9999999999999996e-26  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  1  normal  0.13465 
 
 
-
 
NC_004116  SAG2090  Holliday junction resolvase-like protein  42.96 
 
 		 136 aa  116  9.999999999999999e-26  Streptococcus agalactiae 2603V/R  Bacteria  hitchhiker  0.000724166  n/a   
 
 
-
 
NC_013171  Apre_0938  Holliday junction resolvase YqgF  38.41 
 
 		 139 aa  116  9.999999999999999e-26  Anaerococcus prevotii DSM 20548  Bacteria  normal  1  n/a   
 
 
-
 
NC_002976  SERP1180  Holliday junction resolvase-like protein  43.07 
 
 		 142 aa  115  1.9999999999999998e-25  Staphylococcus epidermidis RP62A  Bacteria  normal  1  n/a   
 
 
-
 
NC_010001  Cphy_2297  Holliday junction resolvase YqgF  42.65 
 
 		 150 aa  115  3e-25  Clostridium phytofermentans ISDg  Bacteria  normal  0.470334  n/a   
 
 
-
 
NC_009513  Lreu_0535  Holliday junction resolvase-like protein  44.2 
 
 		 147 aa  114  3.9999999999999997e-25  Lactobacillus reuteri DSM 20016  Bacteria  hitchhiker  0.00000331559  n/a   
 
 
-
 
NC_009487  SaurJH9_1673  Holliday junction resolvase-like protein  42.34 
 
 		 142 aa  114  7.999999999999999e-25  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.514842  n/a   
 
 
-
 
NC_009632  SaurJH1_1707  Holliday junction resolvase-like protein  42.34 
 
 		 142 aa  114  7.999999999999999e-25  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.24342  n/a   
 
 
-
 
NC_013440  Hoch_5401  Holliday junction resolvase YqgF  44.6 
 
 		 139 aa  111  3e-24  Haliangium ochraceum DSM 14365  Bacteria  normal  0.616966  normal  0.68966 
 
 
-
 
NC_010718  Nther_1778  Holliday junction resolvase YqgF  42.42 
 
 		 141 aa  109  2.0000000000000002e-23  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  1  normal  0.140554 
 
 
-
 
NC_008530  LGAS_0423  Holliday junction resolvase-like protein  41.3 
 
 		 143 aa  108  4.0000000000000004e-23  Lactobacillus gasseri ATCC 33323  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009012  Cthe_0153  Holliday junction resolvase-like protein  39.1 
 
 		 141 aa  102  1e-21  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.0185653  n/a   
 
 
-
 
NC_009767  Rcas_3713  Holliday junction resolvase YqgF  41.48 
 
 		 146 aa  100  6e-21  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0658941  hitchhiker  0.00476179 
 
 
-
 
NC_011898  Ccel_2239  Holliday junction resolvase-like protein  39.42 
 
 		 142 aa  99.4  2e-20  Clostridium cellulolyticum H10  Bacteria  decreased coverage  0.0000140275  n/a   
 
 
-
 
NC_009523  RoseRS_3225  Holliday junction resolvase YqgF  41.04 
 
 		 141 aa  99  3e-20  Roseiflexus sp. RS-1  Bacteria  normal  0.387387  normal  1 
 
 
-
 
NC_008527  LACR_0138  Holliday junction resolvase-like protein  39.85 
 
 		 143 aa  99  3e-20  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  1  n/a   
 
 
-
 
NC_013385  Adeg_1438  Holliday junction resolvase YqgF  39.55 
 
 		 146 aa  95.5  2e-19  Ammonifex degensii KC4  Bacteria  normal  0.0335959  n/a   
 
 
-
 
NC_007413  Ava_3804  Holliday junction resolvase-like protein  35.77 
 
 		 151 aa  95.1  3e-19  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0796335  normal  1 
 
 
-
 
NC_008009  Acid345_0556  Holliday junction resolvase YqgF  38.64 
 
 		 153 aa  95.1  3e-19  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.901255  normal  0.0480752 
 
 
-
 
NC_013757  Gobs_3157  Holliday junction resolvase YqgF  36.57 
 
 		 222 aa  93.6  1e-18  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.588989  n/a   
 
 
-
 
NC_008312  Tery_4379  Holliday junction resolvase-like protein  38.81 
 
 		 149 aa  93.6  1e-18  Trichodesmium erythraeum IMS101  Bacteria  normal  0.556882  normal  0.251804 
 
 
-
 
NC_011729  PCC7424_3098  Holliday junction resolvase-like protein  35.51 
 
 		 151 aa  92.4  2e-18  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  1 
 
 
-
 
NC_013595  Sros_6093  endonuclease involved in recombination-like protein  41.79 
 
 		 163 aa  92.8  2e-18  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0746227  normal  1 
 
 
-
 
NC_011884  Cyan7425_2514  Holliday junction resolvase-like protein  37.23 
 
 		 150 aa  92.8  2e-18  Cyanothece sp. PCC 7425  Bacteria  normal  0.36708  normal  1 
 
 
-
 
NC_014248  Aazo_4148  Holliday junction resolvase YqgF  37.23 
 
 		 158 aa  92  3e-18  'Nostoc azollae' 0708  Bacteria  normal  0.927535  n/a   
 
 
-
 
NC_010655  Amuc_1191  Holliday junction resolvase YqgF  41.22 
 
 		 141 aa  92  3e-18  Akkermansia muciniphila ATCC BAA-835  Bacteria  hitchhiker  0.0000237997  normal  1 
 
 
-
 
NC_007604  Synpcc7942_2398  Holliday junction resolvase-like protein  39.86 
 
 		 149 aa  91.3  5e-18  Synechococcus elongatus PCC 7942  Bacteria  normal  0.0366153  hitchhiker  0.00151496 
 
 
-
 
NC_008699  Noca_2408  Holliday junction resolvase-like protein  41.73 
 
 		 156 aa  90.5  7e-18  Nocardioides sp. JS614  Bacteria  normal  0.332292  n/a   
 
 
-
 
NC_013161  Cyan8802_1969  Holliday junction resolvase-like protein  39.85 
 
 		 139 aa  90.1  9e-18  Cyanothece sp. PCC 8802  Bacteria  normal  1  normal  0.0212683 
 
 
-
 
NC_011726  PCC8801_1942  Holliday junction resolvase-like protein  39.85 
 
 		 139 aa  90.1  9e-18  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_010730  SYO3AOP1_0474  Holliday junction resolvase YqgF  40.14 
 
 		 145 aa  89.7  1e-17  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  hitchhiker  0.00800439  n/a   
 
 
-
 
NC_012669  Bcav_2015  Holliday junction resolvase YqgF  39.55 
 
 		 163 aa  89.4  2e-17  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.756916  normal  0.07881 
 
 
-
 
NC_011831  Cagg_0094  Holliday junction resolvase YqgF  37.78 
 
 		 142 aa  89.4  2e-17  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.0018567  normal  1 
 
 
-
 
NC_007799  ECH_0460  hypothetical protein  32.24 
 
 		 156 aa  89.4  2e-17  Ehrlichia chaffeensis str. Arkansas  Bacteria  normal  1  n/a   
 
 
-
 
NC_010424  Daud_0915  Holliday junction resolvase YqgF  36.69 
 
 		 141 aa  89.4  2e-17  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.242003  n/a   
 
 
-
 
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