More than 300 homologs were found in PanDaTox collection
for query gene Noca_2408 on replicon NC_008699
Organism: Nocardioides sp. JS614



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008699  Noca_2408  Holliday junction resolvase-like protein  100 
 
 
156 aa  293  8e-79  Nocardioides sp. JS614  Bacteria  normal  0.332292  n/a   
 
 
-
 
NC_013595  Sros_6093  endonuclease involved in recombination-like protein  62.67 
 
 
163 aa  172  1.9999999999999998e-42  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0746227  normal 
 
 
-
 
NC_014210  Ndas_3074  Holliday junction resolvase YqgF  57.67 
 
 
161 aa  166  1e-40  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.459764 
 
 
-
 
NC_014165  Tbis_2046  Holliday junction resolvase YqgF  62.99 
 
 
163 aa  147  6e-35  Thermobispora bispora DSM 43833  Bacteria  normal  0.0425259  normal 
 
 
-
 
NC_012669  Bcav_2015  Holliday junction resolvase YqgF  56.29 
 
 
163 aa  144  3e-34  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.756916  normal  0.07881 
 
 
-
 
NC_013510  Tcur_2136  Holliday junction resolvase YqgF  61.44 
 
 
152 aa  140  9.999999999999999e-33  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.000271405  n/a   
 
 
-
 
NC_013172  Bfae_16350  conserved hypothetical protein TIGR00250  53.55 
 
 
181 aa  138  1.9999999999999998e-32  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_1819  Holliday junction resolvase YqgF  55.06 
 
 
190 aa  136  1e-31  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0503115  normal 
 
 
-
 
NC_013131  Caci_2379  Holliday junction resolvase-like protein  54.84 
 
 
171 aa  134  4e-31  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_008578  Acel_1329  Holliday junction resolvase YqgF  55.77 
 
 
173 aa  134  4e-31  Acidothermus cellulolyticus 11B  Bacteria  normal  0.0531797  normal  0.27422 
 
 
-
 
NC_007333  Tfu_2069  Holliday junction resolvase-like protein  56.89 
 
 
159 aa  134  5e-31  Thermobifida fusca YX  Bacteria  normal  0.0705886  n/a   
 
 
-
 
NC_008146  Mmcs_2347  Holliday junction resolvase-like protein  55.41 
 
 
169 aa  130  5e-30  Mycobacterium sp. MCS  Bacteria  normal  0.502005  n/a   
 
 
-
 
NC_008705  Mkms_2394  Holliday junction resolvase-like protein  55.41 
 
 
169 aa  130  5e-30  Mycobacterium sp. KMS  Bacteria  normal  normal  0.345644 
 
 
-
 
NC_009077  Mjls_2388  Holliday junction resolvase-like protein  55.41 
 
 
169 aa  130  7.999999999999999e-30  Mycobacterium sp. JLS  Bacteria  normal  normal  0.0472019 
 
 
-
 
NC_013530  Xcel_1690  Holliday junction resolvase YqgF  56.13 
 
 
184 aa  129  1.0000000000000001e-29  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.480738  n/a   
 
 
-
 
NC_009953  Sare_1820  Holliday junction resolvase YqgF  50.68 
 
 
153 aa  128  2.0000000000000002e-29  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.0000610168 
 
 
-
 
NC_007777  Francci3_3213  Holliday junction resolvase-like protein  52.6 
 
 
202 aa  128  3e-29  Frankia sp. CcI3  Bacteria  normal  0.0825611  normal 
 
 
-
 
NC_008726  Mvan_2641  Holliday junction resolvase YqgF  53.95 
 
 
175 aa  127  7.000000000000001e-29  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_1829  Holliday junction resolvase YqgF  49.32 
 
 
153 aa  125  2.0000000000000002e-28  Salinispora tropica CNB-440  Bacteria  normal  0.0551936  normal 
 
 
-
 
NC_009921  Franean1_1695  Holliday junction resolvase-like protein  55.56 
 
 
188 aa  125  2.0000000000000002e-28  Frankia sp. EAN1pec  Bacteria  normal  0.0458229  normal  0.165399 
 
 
-
 
NC_009338  Mflv_3762  Holliday junction resolvase YqgF  49.68 
 
 
175 aa  123  1e-27  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.454353 
 
 
-
 
NC_013521  Sked_17700  conserved hypothetical protein TIGR00250  52.5 
 
 
167 aa  119  1.9999999999999998e-26  Sanguibacter keddieii DSM 10542  Bacteria  hitchhiker  0.00726332  normal  0.269027 
 
 
-
 
NC_013757  Gobs_3157  Holliday junction resolvase YqgF  48.92 
 
 
222 aa  115  1.9999999999999998e-25  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.588989  n/a   
 
 
-
 
NC_013093  Amir_5264  Holliday junction resolvase YqgF  50.94 
 
 
170 aa  115  3e-25  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_12575  Holliday junction resolvase-like protein  54.01 
 
 
170 aa  114  5e-25  Mycobacterium tuberculosis F11  Bacteria  hitchhiker  0.00396279  normal  0.126571 
 
 
-
 
NC_013441  Gbro_2321  Holliday junction resolvase YqgF  51.43 
 
 
143 aa  114  6e-25  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_3877  Holliday junction resolvase YqgF  48.3 
 
 
151 aa  113  7.999999999999999e-25  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.843962  normal 
 
 
-
 
NC_013159  Svir_15280  conserved hypothetical protein TIGR00250  52.14 
 
 
154 aa  108  3e-23  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.0307172  normal  0.652486 
 
 
-
 
NC_013235  Namu_3296  Holliday junction resolvase YqgF  51.37 
 
 
169 aa  107  7.000000000000001e-23  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.000134676  normal  0.0641237 
 
 
-
 
NC_014158  Tpau_1976  Holliday junction resolvase YqgF  49.66 
 
 
161 aa  106  1e-22  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.133397  n/a   
 
 
-
 
NC_013174  Jden_1350  Holliday junction resolvase YqgF  41.98 
 
 
167 aa  100  5e-21  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_013517  Sterm_2739  Holliday junction resolvase YqgF  43.38 
 
 
137 aa  100  6e-21  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_3031  Holliday junction resolvase YqgF  49.02 
 
 
188 aa  100  7e-21  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_010655  Amuc_1191  Holliday junction resolvase YqgF  44.44 
 
 
141 aa  99.8  1e-20  Akkermansia muciniphila ATCC BAA-835  Bacteria  hitchhiker  0.0000237997  normal 
 
 
-
 
NC_013169  Ksed_12520  conserved hypothetical protein TIGR00250  46.62 
 
 
161 aa  95.9  2e-19  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.101388  normal  0.418633 
 
 
-
 
NC_008541  Arth_2277  Holliday junction resolvase YqgF  41.72 
 
 
199 aa  95.9  2e-19  Arthrobacter sp. FB24  Bacteria  normal  0.117352  n/a   
 
 
-
 
NC_010320  Teth514_1491  Holliday junction resolvase-like protein  40.71 
 
 
139 aa  94.7  4e-19  Thermoanaerobacter sp. X514  Bacteria  unclonable  0.0000000000748947  n/a   
 
 
-
 
NC_013525  Tter_0088  Holliday junction resolvase YqgF  43.06 
 
 
149 aa  93.6  8e-19  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_010816  BLD_0615  putative endonuclease for recombination  39.74 
 
 
152 aa  93.6  8e-19  Bifidobacterium longum DJO10A  Bacteria  normal  0.105236  n/a   
 
 
-
 
NC_009523  RoseRS_3225  Holliday junction resolvase YqgF  42.34 
 
 
141 aa  92.4  2e-18  Roseiflexus sp. RS-1  Bacteria  normal  0.387387  normal 
 
 
-
 
NC_011886  Achl_2014  Holliday junction resolvase YqgF  41.56 
 
 
207 aa  92.8  2e-18  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.00000000330035 
 
 
-
 
NC_013515  Smon_0417  Holliday junction resolvase YqgF  36.62 
 
 
142 aa  91.7  3e-18  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_008044  TM1040_0967  Holliday junction resolvase-like protein  41.73 
 
 
157 aa  90.5  7e-18  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_3713  Holliday junction resolvase YqgF  43.88 
 
 
146 aa  90.5  7e-18  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0658941  hitchhiker  0.00476179 
 
 
-
 
NC_009012  Cthe_0153  Holliday junction resolvase-like protein  39.71 
 
 
141 aa  90.5  9e-18  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.0185653  n/a   
 
 
-
 
NC_009253  Dred_0775  Holliday junction resolvase YqgF  36.5 
 
 
137 aa  89.7  1e-17  Desulfotomaculum reducens MI-1  Bacteria  unclonable  0.00000000463594  n/a   
 
 
-
 
NC_009952  Dshi_1064  Holliday junction resolvase-like protein  42.65 
 
 
163 aa  90.1  1e-17  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.282287  normal 
 
 
-
 
NC_013161  Cyan8802_1969  Holliday junction resolvase-like protein  38.85 
 
 
139 aa  88.6  3e-17  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.0212683 
 
 
-
 
NC_011726  PCC8801_1942  Holliday junction resolvase-like protein  38.85 
 
 
139 aa  88.6  3e-17  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013171  Apre_0938  Holliday junction resolvase YqgF  39.71 
 
 
139 aa  88.6  3e-17  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_1640  Holliday junction resolvase YqgF  43.38 
 
 
140 aa  87  8e-17  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.278901  normal  0.163549 
 
 
-
 
NC_008312  Tery_4379  Holliday junction resolvase-like protein  36.69 
 
 
149 aa  87  9e-17  Trichodesmium erythraeum IMS101  Bacteria  normal  0.556882  normal  0.251804 
 
 
-
 
NC_011831  Cagg_0094  Holliday junction resolvase YqgF  42.45 
 
 
142 aa  87  9e-17  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.0018567  normal 
 
 
-
 
NC_011884  Cyan7425_2514  Holliday junction resolvase-like protein  37.59 
 
 
150 aa  86.7  1e-16  Cyanothece sp. PCC 7425  Bacteria  normal  0.36708  normal 
 
 
-
 
NC_013721  HMPREF0424_0376  RNAse YqgF  38.82 
 
 
152 aa  86.3  1e-16  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_008528  OEOE_1165  RNase H-like ribonuclease  34.75 
 
 
144 aa  86.7  1e-16  Oenococcus oeni PSU-1  Bacteria  normal  0.345189  n/a   
 
 
-
 
NC_011729  PCC7424_3098  Holliday junction resolvase-like protein  37.68 
 
 
151 aa  85.1  3e-16  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_007413  Ava_3804  Holliday junction resolvase-like protein  36.55 
 
 
151 aa  84.7  4e-16  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0796335  normal 
 
 
-
 
NC_008531  LEUM_0558  Holliday junction resolvase-like protein  36.17 
 
 
143 aa  84.7  5e-16  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_2239  Holliday junction resolvase-like protein  35.04 
 
 
142 aa  84  6e-16  Clostridium cellulolyticum H10  Bacteria  decreased coverage  0.0000140275  n/a   
 
 
-
 
NC_013216  Dtox_2265  Holliday junction resolvase YqgF  38.69 
 
 
139 aa  83.2  0.000000000000001  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  hitchhiker  0.0000233904 
 
 
-
 
NC_009428  Rsph17025_1879  Holliday junction resolvase-like protein  41.84 
 
 
160 aa  82.8  0.000000000000002  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.620593  normal 
 
 
-
 
NC_008686  Pden_0510  Holliday junction resolvase-like protein  43.15 
 
 
158 aa  82.4  0.000000000000002  Paracoccus denitrificans PD1222  Bacteria  normal  0.556579  normal 
 
 
-
 
NC_012793  GWCH70_2488  Holliday junction resolvase YqgF  37.59 
 
 
138 aa  81.6  0.000000000000003  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.0000000680199  n/a   
 
 
-
 
NC_014248  Aazo_4148  Holliday junction resolvase YqgF  36.62 
 
 
158 aa  81.6  0.000000000000004  'Nostoc azollae' 0708  Bacteria  normal  0.927535  n/a   
 
 
-
 
NC_007964  Nham_2279  Holliday junction resolvase-like protein  43.07 
 
 
168 aa  81.3  0.000000000000005  Nitrobacter hamburgensis X14  Bacteria  normal  0.273152  n/a   
 
 
-
 
NC_008009  Acid345_0556  Holliday junction resolvase YqgF  39.71 
 
 
153 aa  80.5  0.000000000000008  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.901255  normal  0.0480752 
 
 
-
 
NC_007493  RSP_2684  Holliday junction resolvase-like protein  41.84 
 
 
160 aa  80.5  0.000000000000009  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.173322  n/a   
 
 
-
 
NC_009049  Rsph17029_1342  Holliday junction resolvase-like protein  41.84 
 
 
160 aa  80.5  0.000000000000009  Rhodobacter sphaeroides ATCC 17029  Bacteria  decreased coverage  0.00888056  normal  0.184568 
 
 
-
 
NC_010424  Daud_0915  Holliday junction resolvase YqgF  40.71 
 
 
141 aa  79.7  0.00000000000001  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.242003  n/a   
 
 
-
 
NC_007958  RPD_3023  Holliday junction resolvase-like protein  41.61 
 
 
160 aa  80.1  0.00000000000001  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.438725  normal  0.394583 
 
 
-
 
NC_009719  Plav_2841  Holliday junction resolvase YqgF  39.57 
 
 
182 aa  79.7  0.00000000000001  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.636675  normal  0.911101 
 
 
-
 
NC_008532  STER_1938  Holliday junction resolvase-like protein  35.97 
 
 
139 aa  80.1  0.00000000000001  Streptococcus thermophilus LMD-9  Bacteria  unclonable  0.0000000471473  n/a   
 
 
-
 
NC_004116  SAG2090  Holliday junction resolvase-like protein  37.04 
 
 
136 aa  79  0.00000000000002  Streptococcus agalactiae 2603V/R  Bacteria  hitchhiker  0.000724166  n/a   
 
 
-
 
NC_009485  BBta_4721  Holliday junction resolvase-like protein  41.61 
 
 
161 aa  79.3  0.00000000000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_05800  Holliday junction resolvase YqgF  37.41 
 
 
140 aa  79  0.00000000000002  Halothermothrix orenii H 168  Bacteria  normal  0.209228  n/a   
 
 
-
 
NC_011830  Dhaf_3562  Holliday junction resolvase-like protein  35.86 
 
 
142 aa  78.6  0.00000000000003  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000000000000329746  n/a   
 
 
-
 
NC_007406  Nwi_2004  Holliday junction resolvase-like protein  40.79 
 
 
163 aa  78.6  0.00000000000003  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.166059  normal  0.662003 
 
 
-
 
NC_007778  RPB_2429  Holliday junction resolvase-like protein  41.61 
 
 
160 aa  78.6  0.00000000000003  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.0446184 
 
 
-
 
NC_008346  Swol_0470  Holliday junction resolvase YqgF  35.29 
 
 
141 aa  79  0.00000000000003  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  unclonable  0.00000000599692  n/a   
 
 
-
 
NC_009675  Anae109_2535  Holliday junction resolvase-like protein  43.38 
 
 
137 aa  77.8  0.00000000000005  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.52249 
 
 
-
 
NC_010184  BcerKBAB4_4233  Holliday junction resolvase-like protein  35 
 
 
137 aa  77.4  0.00000000000006  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.000272031  n/a   
 
 
-
 
NC_013440  Hoch_5401  Holliday junction resolvase YqgF  42.86 
 
 
139 aa  77.4  0.00000000000007  Haliangium ochraceum DSM 14365  Bacteria  normal  0.616966  normal  0.68966 
 
 
-
 
NC_008347  Mmar10_1708  Holliday junction resolvase YqgF  41.01 
 
 
151 aa  77.4  0.00000000000007  Maricaulis maris MCS10  Bacteria  normal  normal  0.180151 
 
 
-
 
NC_010001  Cphy_2297  Holliday junction resolvase YqgF  38.13 
 
 
150 aa  76.3  0.0000000000001  Clostridium phytofermentans ISDg  Bacteria  normal  0.470334  n/a   
 
 
-
 
NC_011004  Rpal_3523  Holliday junction resolvase-like protein  40.15 
 
 
160 aa  77  0.0000000000001  Rhodopseudomonas palustris TIE-1  Bacteria  hitchhiker  0.00889049  n/a   
 
 
-
 
NC_013205  Aaci_2024  Holliday junction resolvase YqgF  40.13 
 
 
144 aa  76.6  0.0000000000001  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.330713  n/a   
 
 
-
 
NC_013411  GYMC61_0964  Holliday junction resolvase YqgF  39.01 
 
 
138 aa  76.6  0.0000000000001  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007604  Synpcc7942_2398  Holliday junction resolvase-like protein  37.41 
 
 
149 aa  76.3  0.0000000000001  Synechococcus elongatus PCC 7942  Bacteria  normal  0.0366153  hitchhiker  0.00151496 
 
 
-
 
NC_011772  BCG9842_B0730  Holliday junction resolvase-like protein  34.29 
 
 
137 aa  76.3  0.0000000000001  Bacillus cereus G9842  Bacteria  decreased coverage  0.0000000542239  normal 
 
 
-
 
NC_003909  BCE_4469  Holliday junction resolvase-like protein  34.29 
 
 
137 aa  75.9  0.0000000000002  Bacillus cereus ATCC 10987  Bacteria  decreased coverage  0.000000240455  n/a   
 
 
-
 
NC_005945  BAS4282  Holliday junction resolvase-like protein  34.29 
 
 
137 aa  75.9  0.0000000000002  Bacillus anthracis str. Sterne  Bacteria  hitchhiker  0.000000036093  n/a   
 
 
-
 
NC_005957  BT9727_4119  Holliday junction resolvase-like protein  34.29 
 
 
137 aa  75.9  0.0000000000002  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  decreased coverage  3.61572e-18  n/a   
 
 
-
 
NC_006274  BCZK4130  Holliday junction resolvase-like protein  34.29 
 
 
137 aa  75.9  0.0000000000002  Bacillus cereus E33L  Bacteria  unclonable  0.000000000000238321  n/a   
 
 
-
 
NC_011773  BCAH820_4466  Holliday junction resolvase-like protein  34.29 
 
 
137 aa  75.9  0.0000000000002  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.0000283196 
 
 
-
 
NC_009513  Lreu_0535  Holliday junction resolvase-like protein  30.94 
 
 
147 aa  75.9  0.0000000000002  Lactobacillus reuteri DSM 20016  Bacteria  hitchhiker  0.00000331559  n/a   
 
 
-
 
NC_007530  GBAA_4614  Holliday junction resolvase-like protein  34.29 
 
 
137 aa  75.9  0.0000000000002  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  decreased coverage  0.0000000000846091  n/a   
 
 
-
 
NC_008530  LGAS_0423  Holliday junction resolvase-like protein  32.87 
 
 
143 aa  75.9  0.0000000000002  Lactobacillus gasseri ATCC 33323  Bacteria  normal  normal 
 
 
-
 
NC_009484  Acry_0873  Holliday junction resolvase YqgF  42.22 
 
 
158 aa  74.7  0.0000000000004  Acidiphilium cryptum JF-5  Bacteria  normal  0.205729  n/a   
 
 
-
 
NC_011658  BCAH187_A4519  Holliday junction resolvase-like protein  34.78 
 
 
137 aa  74.7  0.0000000000004  Bacillus cereus AH187  Bacteria  hitchhiker  0.000203205  n/a   
 
 
-
 
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