270 homologs were found in PanDaTox collection
for query gene Namu_3296 on replicon NC_013235
Organism: Nakamurella multipartita DSM 44233



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013235  Namu_3296  Holliday junction resolvase YqgF  100 
 
 
169 aa  322  2e-87  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.000134676  normal  0.0641237 
 
 
-
 
NC_013947  Snas_3877  Holliday junction resolvase YqgF  55.26 
 
 
151 aa  145  3e-34  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.843962  normal 
 
 
-
 
NC_009921  Franean1_1695  Holliday junction resolvase-like protein  54.73 
 
 
188 aa  139  1.9999999999999998e-32  Frankia sp. EAN1pec  Bacteria  normal  0.0458229  normal  0.165399 
 
 
-
 
NC_009380  Strop_1829  Holliday junction resolvase YqgF  53.33 
 
 
153 aa  138  3.9999999999999997e-32  Salinispora tropica CNB-440  Bacteria  normal  0.0551936  normal 
 
 
-
 
NC_007777  Francci3_3213  Holliday junction resolvase-like protein  49.7 
 
 
202 aa  137  8.999999999999999e-32  Frankia sp. CcI3  Bacteria  normal  0.0825611  normal 
 
 
-
 
NC_009953  Sare_1820  Holliday junction resolvase YqgF  53.33 
 
 
153 aa  136  1e-31  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.0000610168 
 
 
-
 
NC_013595  Sros_6093  endonuclease involved in recombination-like protein  51.02 
 
 
163 aa  134  8e-31  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0746227  normal 
 
 
-
 
NC_013093  Amir_5264  Holliday junction resolvase YqgF  58.71 
 
 
170 aa  132  1.9999999999999998e-30  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_2347  Holliday junction resolvase-like protein  51.61 
 
 
169 aa  126  1.0000000000000001e-28  Mycobacterium sp. MCS  Bacteria  normal  0.502005  n/a   
 
 
-
 
NC_008705  Mkms_2394  Holliday junction resolvase-like protein  51.61 
 
 
169 aa  126  1.0000000000000001e-28  Mycobacterium sp. KMS  Bacteria  normal  normal  0.345644 
 
 
-
 
NC_012669  Bcav_2015  Holliday junction resolvase YqgF  53.1 
 
 
163 aa  126  2.0000000000000002e-28  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.756916  normal  0.07881 
 
 
-
 
NC_009077  Mjls_2388  Holliday junction resolvase-like protein  51.61 
 
 
169 aa  126  2.0000000000000002e-28  Mycobacterium sp. JLS  Bacteria  normal  normal  0.0472019 
 
 
-
 
NC_008726  Mvan_2641  Holliday junction resolvase YqgF  53.02 
 
 
175 aa  124  5e-28  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_15280  conserved hypothetical protein TIGR00250  52.35 
 
 
154 aa  124  7e-28  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.0307172  normal  0.652486 
 
 
-
 
NC_008578  Acel_1329  Holliday junction resolvase YqgF  52.74 
 
 
173 aa  123  1e-27  Acidothermus cellulolyticus 11B  Bacteria  normal  0.0531797  normal  0.27422 
 
 
-
 
NC_014151  Cfla_1819  Holliday junction resolvase YqgF  50.62 
 
 
190 aa  120  7e-27  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0503115  normal 
 
 
-
 
NC_009338  Mflv_3762  Holliday junction resolvase YqgF  48.99 
 
 
175 aa  120  9e-27  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.454353 
 
 
-
 
NC_013441  Gbro_2321  Holliday junction resolvase YqgF  52.38 
 
 
143 aa  120  9.999999999999999e-27  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_3157  Holliday junction resolvase YqgF  50.35 
 
 
222 aa  117  6e-26  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.588989  n/a   
 
 
-
 
NC_008699  Noca_2408  Holliday junction resolvase-like protein  50.99 
 
 
156 aa  117  6e-26  Nocardioides sp. JS614  Bacteria  normal  0.332292  n/a   
 
 
-
 
NC_014165  Tbis_2046  Holliday junction resolvase YqgF  51.37 
 
 
163 aa  116  1.9999999999999998e-25  Thermobispora bispora DSM 43833  Bacteria  normal  0.0425259  normal 
 
 
-
 
NC_013510  Tcur_2136  Holliday junction resolvase YqgF  50.74 
 
 
152 aa  115  3e-25  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.000271405  n/a   
 
 
-
 
NC_013521  Sked_17700  conserved hypothetical protein TIGR00250  54.19 
 
 
167 aa  115  3.9999999999999997e-25  Sanguibacter keddieii DSM 10542  Bacteria  hitchhiker  0.00726332  normal  0.269027 
 
 
-
 
NC_014210  Ndas_3074  Holliday junction resolvase YqgF  48.05 
 
 
161 aa  114  5e-25  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.459764 
 
 
-
 
NC_008541  Arth_2277  Holliday junction resolvase YqgF  44.85 
 
 
199 aa  112  3e-24  Arthrobacter sp. FB24  Bacteria  normal  0.117352  n/a   
 
 
-
 
NC_014158  Tpau_1976  Holliday junction resolvase YqgF  43.87 
 
 
161 aa  108  3e-23  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.133397  n/a   
 
 
-
 
NC_009565  TBFG_12575  Holliday junction resolvase-like protein  46.45 
 
 
170 aa  106  2e-22  Mycobacterium tuberculosis F11  Bacteria  hitchhiker  0.00396279  normal  0.126571 
 
 
-
 
NC_013131  Caci_2379  Holliday junction resolvase-like protein  50.34 
 
 
171 aa  105  3e-22  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_16350  conserved hypothetical protein TIGR00250  46.1 
 
 
181 aa  105  4e-22  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_1640  Holliday junction resolvase YqgF  45.52 
 
 
140 aa  103  8e-22  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.278901  normal  0.163549 
 
 
-
 
NC_013530  Xcel_1690  Holliday junction resolvase YqgF  48.3 
 
 
184 aa  102  3e-21  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.480738  n/a   
 
 
-
 
NC_010655  Amuc_1191  Holliday junction resolvase YqgF  40.56 
 
 
141 aa  102  3e-21  Akkermansia muciniphila ATCC BAA-835  Bacteria  hitchhiker  0.0000237997  normal 
 
 
-
 
NC_011886  Achl_2014  Holliday junction resolvase YqgF  44.52 
 
 
207 aa  101  6e-21  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.00000000330035 
 
 
-
 
NC_008530  LGAS_0423  Holliday junction resolvase-like protein  40.69 
 
 
143 aa  95.9  3e-19  Lactobacillus gasseri ATCC 33323  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_3713  Holliday junction resolvase YqgF  41.67 
 
 
146 aa  95.1  4e-19  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0658941  hitchhiker  0.00476179 
 
 
-
 
NC_013174  Jden_1350  Holliday junction resolvase YqgF  44.3 
 
 
167 aa  94.4  6e-19  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_008532  STER_1938  Holliday junction resolvase-like protein  41.38 
 
 
139 aa  92.8  2e-18  Streptococcus thermophilus LMD-9  Bacteria  unclonable  0.0000000471473  n/a   
 
 
-
 
NC_004116  SAG2090  Holliday junction resolvase-like protein  41.67 
 
 
136 aa  92  3e-18  Streptococcus agalactiae 2603V/R  Bacteria  hitchhiker  0.000724166  n/a   
 
 
-
 
NC_009523  RoseRS_3225  Holliday junction resolvase YqgF  40.56 
 
 
141 aa  92.4  3e-18  Roseiflexus sp. RS-1  Bacteria  normal  0.387387  normal 
 
 
-
 
NC_009972  Haur_3633  Holliday junction resolvase YqgF  38.46 
 
 
158 aa  92.4  3e-18  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_008346  Swol_0470  Holliday junction resolvase YqgF  34.97 
 
 
141 aa  91.3  5e-18  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  unclonable  0.00000000599692  n/a   
 
 
-
 
NC_009428  Rsph17025_1879  Holliday junction resolvase-like protein  37.34 
 
 
160 aa  89.4  2e-17  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.620593  normal 
 
 
-
 
NC_013169  Ksed_12520  conserved hypothetical protein TIGR00250  43.59 
 
 
161 aa  89  3e-17  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.101388  normal  0.418633 
 
 
-
 
NC_009664  Krad_3031  Holliday junction resolvase YqgF  45.89 
 
 
188 aa  88.2  5e-17  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_2069  Holliday junction resolvase-like protein  49.67 
 
 
159 aa  88.2  6e-17  Thermobifida fusca YX  Bacteria  normal  0.0705886  n/a   
 
 
-
 
NC_008527  LACR_0138  Holliday junction resolvase-like protein  40.56 
 
 
143 aa  88.2  6e-17  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  n/a   
 
 
-
 
NC_008528  OEOE_1165  RNase H-like ribonuclease  38.19 
 
 
144 aa  88.2  6e-17  Oenococcus oeni PSU-1  Bacteria  normal  0.345189  n/a   
 
 
-
 
NC_008009  Acid345_0556  Holliday junction resolvase YqgF  37.76 
 
 
153 aa  86.3  2e-16  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.901255  normal  0.0480752 
 
 
-
 
NC_007493  RSP_2684  Holliday junction resolvase-like protein  38.31 
 
 
160 aa  85.5  3e-16  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.173322  n/a   
 
 
-
 
NC_008686  Pden_0510  Holliday junction resolvase-like protein  38.41 
 
 
158 aa  85.9  3e-16  Paracoccus denitrificans PD1222  Bacteria  normal  0.556579  normal 
 
 
-
 
NC_009049  Rsph17029_1342  Holliday junction resolvase-like protein  38.31 
 
 
160 aa  85.5  3e-16  Rhodobacter sphaeroides ATCC 17029  Bacteria  decreased coverage  0.00888056  normal  0.184568 
 
 
-
 
NC_013517  Sterm_2739  Holliday junction resolvase YqgF  36.55 
 
 
137 aa  84.3  8e-16  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_008312  Tery_4379  Holliday junction resolvase-like protein  35.66 
 
 
149 aa  84  9e-16  Trichodesmium erythraeum IMS101  Bacteria  normal  0.556882  normal  0.251804 
 
 
-
 
NC_011831  Cagg_0094  Holliday junction resolvase YqgF  41.26 
 
 
142 aa  83.6  0.000000000000001  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.0018567  normal 
 
 
-
 
NC_009012  Cthe_0153  Holliday junction resolvase-like protein  35.66 
 
 
141 aa  83.6  0.000000000000001  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.0185653  n/a   
 
 
-
 
NC_009952  Dshi_1064  Holliday junction resolvase-like protein  37.97 
 
 
163 aa  82.8  0.000000000000002  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.282287  normal 
 
 
-
 
NC_010320  Teth514_1491  Holliday junction resolvase-like protein  35.42 
 
 
139 aa  82.8  0.000000000000002  Thermoanaerobacter sp. X514  Bacteria  unclonable  0.0000000000748947  n/a   
 
 
-
 
NC_012793  GWCH70_2488  Holliday junction resolvase YqgF  35.66 
 
 
138 aa  82  0.000000000000003  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.0000000680199  n/a   
 
 
-
 
NC_008044  TM1040_0967  Holliday junction resolvase-like protein  34.44 
 
 
157 aa  82  0.000000000000003  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_008531  LEUM_0558  Holliday junction resolvase-like protein  36.11 
 
 
143 aa  82.4  0.000000000000003  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_013171  Apre_0938  Holliday junction resolvase YqgF  33.57 
 
 
139 aa  82  0.000000000000003  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_013721  HMPREF0424_0376  RNAse YqgF  36.31 
 
 
152 aa  82.4  0.000000000000003  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_009720  Xaut_3922  Holliday junction resolvase YqgF  38.82 
 
 
176 aa  82  0.000000000000004  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_009513  Lreu_0535  Holliday junction resolvase-like protein  35.42 
 
 
147 aa  81.6  0.000000000000005  Lactobacillus reuteri DSM 20016  Bacteria  hitchhiker  0.00000331559  n/a   
 
 
-
 
NC_011729  PCC7424_3098  Holliday junction resolvase-like protein  37.06 
 
 
151 aa  81.3  0.000000000000007  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_013515  Smon_0417  Holliday junction resolvase YqgF  34.01 
 
 
142 aa  80.9  0.000000000000007  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_009485  BBta_4721  Holliday junction resolvase-like protein  40.51 
 
 
161 aa  80.9  0.000000000000008  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_4469  Holliday junction resolvase-like protein  37.06 
 
 
137 aa  80.1  0.00000000000001  Bacillus cereus ATCC 10987  Bacteria  decreased coverage  0.000000240455  n/a   
 
 
-
 
NC_005945  BAS4282  Holliday junction resolvase-like protein  37.06 
 
 
137 aa  80.1  0.00000000000001  Bacillus anthracis str. Sterne  Bacteria  hitchhiker  0.000000036093  n/a   
 
 
-
 
NC_005957  BT9727_4119  Holliday junction resolvase-like protein  37.06 
 
 
137 aa  80.1  0.00000000000001  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  decreased coverage  3.61572e-18  n/a   
 
 
-
 
NC_006274  BCZK4130  Holliday junction resolvase-like protein  37.06 
 
 
137 aa  80.1  0.00000000000001  Bacillus cereus E33L  Bacteria  unclonable  0.000000000000238321  n/a   
 
 
-
 
NC_011898  Ccel_2239  Holliday junction resolvase-like protein  31.13 
 
 
142 aa  80.5  0.00000000000001  Clostridium cellulolyticum H10  Bacteria  decreased coverage  0.0000140275  n/a   
 
 
-
 
NC_011658  BCAH187_A4519  Holliday junction resolvase-like protein  37.06 
 
 
137 aa  80.1  0.00000000000001  Bacillus cereus AH187  Bacteria  hitchhiker  0.000203205  n/a   
 
 
-
 
NC_007530  GBAA_4614  Holliday junction resolvase-like protein  37.06 
 
 
137 aa  80.1  0.00000000000001  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  decreased coverage  0.0000000000846091  n/a   
 
 
-
 
NC_011773  BCAH820_4466  Holliday junction resolvase-like protein  37.06 
 
 
137 aa  80.1  0.00000000000001  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.0000283196 
 
 
-
 
NC_010505  Mrad2831_0475  Holliday junction resolvase YqgF  37.58 
 
 
170 aa  79.7  0.00000000000002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.437798  normal  0.0955854 
 
 
-
 
NC_007778  RPB_2429  Holliday junction resolvase-like protein  36.02 
 
 
160 aa  79.3  0.00000000000002  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.0446184 
 
 
-
 
NC_007947  Mfla_2100  Holliday junction resolvase-like protein  33.54 
 
 
146 aa  79.7  0.00000000000002  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_3804  Holliday junction resolvase-like protein  36.11 
 
 
151 aa  79  0.00000000000003  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0796335  normal 
 
 
-
 
NC_011899  Hore_05800  Holliday junction resolvase YqgF  35.42 
 
 
140 aa  78.6  0.00000000000004  Halothermothrix orenii H 168  Bacteria  normal  0.209228  n/a   
 
 
-
 
NC_011772  BCG9842_B0730  Holliday junction resolvase-like protein  36.36 
 
 
137 aa  78.6  0.00000000000004  Bacillus cereus G9842  Bacteria  decreased coverage  0.0000000542239  normal 
 
 
-
 
NC_010184  BcerKBAB4_4233  Holliday junction resolvase-like protein  36.36 
 
 
137 aa  78.2  0.00000000000005  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.000272031  n/a   
 
 
-
 
NC_007958  RPD_3023  Holliday junction resolvase-like protein  35.67 
 
 
160 aa  78.2  0.00000000000006  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.438725  normal  0.394583 
 
 
-
 
NC_013216  Dtox_2265  Holliday junction resolvase YqgF  32.87 
 
 
139 aa  77.8  0.00000000000007  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  hitchhiker  0.0000233904 
 
 
-
 
NC_013165  Shel_07810  conserved hypothetical protein TIGR00250  32.17 
 
 
138 aa  77.8  0.00000000000007  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal  0.0182311 
 
 
-
 
NC_007964  Nham_2279  Holliday junction resolvase-like protein  37.58 
 
 
168 aa  77.8  0.00000000000007  Nitrobacter hamburgensis X14  Bacteria  normal  0.273152  n/a   
 
 
-
 
NC_011725  BCB4264_A4506  Holliday junction resolvase-like protein  36.36 
 
 
137 aa  77.4  0.00000000000008  Bacillus cereus B4264  Bacteria  normal  0.860088  n/a   
 
 
-
 
NC_009674  Bcer98_3099  Holliday junction resolvase-like protein  37.06 
 
 
137 aa  77.4  0.00000000000009  Bacillus cytotoxicus NVH 391-98  Bacteria  hitchhiker  0.00212776  n/a   
 
 
-
 
NC_011666  Msil_0742  Holliday junction resolvase-like protein  35.86 
 
 
161 aa  76.6  0.0000000000001  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0120989 
 
 
-
 
NC_010730  SYO3AOP1_0474  Holliday junction resolvase YqgF  30.26 
 
 
145 aa  77  0.0000000000001  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  hitchhiker  0.00800439  n/a   
 
 
-
 
NC_008261  CPF_2031  Holliday junction resolvase-like protein  32.89 
 
 
137 aa  77  0.0000000000001  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_1748  Holliday junction resolvase-like protein  32.89 
 
 
137 aa  77  0.0000000000001  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_2841  Holliday junction resolvase YqgF  36.99 
 
 
182 aa  76.3  0.0000000000002  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.636675  normal  0.911101 
 
 
-
 
NC_011894  Mnod_3314  Holliday junction resolvase YqgF  35.62 
 
 
163 aa  75.9  0.0000000000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_4344  Holliday junction resolvase YqgF  36.3 
 
 
168 aa  75.5  0.0000000000003  Methylobacterium sp. 4-46  Bacteria  normal  0.892789  normal  0.367855 
 
 
-
 
NC_002950  PG2202  Holliday junction resolvase-like protein  35.62 
 
 
138 aa  75.1  0.0000000000004  Porphyromonas gingivalis W83  Bacteria  n/a    normal 
 
 
-
 
NC_013205  Aaci_2024  Holliday junction resolvase YqgF  35.92 
 
 
144 aa  75.1  0.0000000000004  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.330713  n/a   
 
 
-
 
NC_013161  Cyan8802_1969  Holliday junction resolvase-like protein  33.57 
 
 
139 aa  75.1  0.0000000000004  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.0212683 
 
 
-
 
NC_011726  PCC8801_1942  Holliday junction resolvase-like protein  33.57 
 
 
139 aa  75.1  0.0000000000004  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013522  Taci_1032  Holliday junction resolvase YqgF  32.87 
 
 
142 aa  74.7  0.0000000000005  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
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