291 homologs were found in PanDaTox collection
for query gene HMPREF0424_0376 on replicon NC_013721
Organism: Gardnerella vaginalis 409-05



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013721  HMPREF0424_0376  RNAse YqgF  100 
 
 
152 aa  308  2e-83  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_010816  BLD_0615  putative endonuclease for recombination  67.35 
 
 
152 aa  202  1e-51  Bifidobacterium longum DJO10A  Bacteria  normal  0.105236  n/a   
 
 
-
 
NC_012669  Bcav_2015  Holliday junction resolvase YqgF  38.51 
 
 
163 aa  99.8  1e-20  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.756916  normal  0.07881 
 
 
-
 
NC_009921  Franean1_1695  Holliday junction resolvase-like protein  36.49 
 
 
188 aa  92.4  2e-18  Frankia sp. EAN1pec  Bacteria  normal  0.0458229  normal  0.165399 
 
 
-
 
NC_013757  Gobs_3157  Holliday junction resolvase YqgF  36.73 
 
 
222 aa  90.1  9e-18  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.588989  n/a   
 
 
-
 
NC_007777  Francci3_3213  Holliday junction resolvase-like protein  32.67 
 
 
202 aa  89.4  2e-17  Frankia sp. CcI3  Bacteria  normal  0.0825611  normal 
 
 
-
 
NC_010655  Amuc_1191  Holliday junction resolvase YqgF  34.93 
 
 
141 aa  88.6  3e-17  Akkermansia muciniphila ATCC BAA-835  Bacteria  hitchhiker  0.0000237997  normal 
 
 
-
 
NC_013172  Bfae_16350  conserved hypothetical protein TIGR00250  38 
 
 
181 aa  88.2  3e-17  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_004311  BRA0597  Holliday junction resolvase-like protein  38.46 
 
 
162 aa  87.8  5e-17  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_2265  Holliday junction resolvase YqgF  35.1 
 
 
139 aa  87.4  6e-17  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  hitchhiker  0.0000233904 
 
 
-
 
NC_013169  Ksed_12520  conserved hypothetical protein TIGR00250  39.74 
 
 
161 aa  86.7  1e-16  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.101388  normal  0.418633 
 
 
-
 
NC_009668  Oant_3664  Holliday junction resolvase-like protein  38.46 
 
 
165 aa  86.7  1e-16  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_2408  Holliday junction resolvase-like protein  38.82 
 
 
156 aa  86.3  1e-16  Nocardioides sp. JS614  Bacteria  normal  0.332292  n/a   
 
 
-
 
NC_009504  BOV_A0563  Holliday junction resolvase-like protein  37.76 
 
 
162 aa  86.3  2e-16  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_4233  Holliday junction resolvase-like protein  34.23 
 
 
137 aa  84.7  4e-16  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.000272031  n/a   
 
 
-
 
NC_009674  Bcer98_3099  Holliday junction resolvase-like protein  34 
 
 
137 aa  84.3  5e-16  Bacillus cytotoxicus NVH 391-98  Bacteria  hitchhiker  0.00212776  n/a   
 
 
-
 
NC_013595  Sros_6093  endonuclease involved in recombination-like protein  34.44 
 
 
163 aa  84  6e-16  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0746227  normal 
 
 
-
 
NC_013530  Xcel_1690  Holliday junction resolvase YqgF  37.25 
 
 
184 aa  84  8e-16  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.480738  n/a   
 
 
-
 
NC_011772  BCG9842_B0730  Holliday junction resolvase-like protein  33.56 
 
 
137 aa  83.6  9e-16  Bacillus cereus G9842  Bacteria  decreased coverage  0.0000000542239  normal 
 
 
-
 
NC_014158  Tpau_1976  Holliday junction resolvase YqgF  35.42 
 
 
161 aa  83.2  0.000000000000001  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.133397  n/a   
 
 
-
 
NC_011725  BCB4264_A4506  Holliday junction resolvase-like protein  33.78 
 
 
137 aa  82.8  0.000000000000002  Bacillus cereus B4264  Bacteria  normal  0.860088  n/a   
 
 
-
 
NC_009012  Cthe_0153  Holliday junction resolvase-like protein  33.33 
 
 
141 aa  82  0.000000000000002  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.0185653  n/a   
 
 
-
 
NC_008254  Meso_1361  Holliday junction resolvase YqgF  35.17 
 
 
160 aa  82  0.000000000000002  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_1130  Holliday junction resolvase YqgF  35.53 
 
 
142 aa  81.6  0.000000000000003  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_012793  GWCH70_2488  Holliday junction resolvase YqgF  33.77 
 
 
138 aa  81.3  0.000000000000004  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.0000000680199  n/a   
 
 
-
 
NC_008578  Acel_1329  Holliday junction resolvase YqgF  33.33 
 
 
173 aa  81.3  0.000000000000005  Acidothermus cellulolyticus 11B  Bacteria  normal  0.0531797  normal  0.27422 
 
 
-
 
NC_013522  Taci_1032  Holliday junction resolvase YqgF  33.11 
 
 
142 aa  80.9  0.000000000000006  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_2031  Holliday junction resolvase-like protein  34.46 
 
 
137 aa  80.9  0.000000000000006  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_1748  Holliday junction resolvase-like protein  34.46 
 
 
137 aa  80.9  0.000000000000006  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_2841  Holliday junction resolvase YqgF  34.03 
 
 
182 aa  80.5  0.000000000000007  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.636675  normal  0.911101 
 
 
-
 
NC_008783  BARBAKC583_0838  hypothetical protein  32.87 
 
 
161 aa  80.5  0.000000000000008  Bartonella bacilliformis KC583  Bacteria  normal  0.115372  n/a   
 
 
-
 
NC_009636  Smed_0941  Holliday junction resolvase-like protein  37.67 
 
 
165 aa  80.5  0.000000000000009  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.22726 
 
 
-
 
NC_008346  Swol_0470  Holliday junction resolvase YqgF  35.53 
 
 
141 aa  80.1  0.000000000000009  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  unclonable  0.00000000599692  n/a   
 
 
-
 
NC_009513  Lreu_0535  Holliday junction resolvase-like protein  34.9 
 
 
147 aa  80.1  0.00000000000001  Lactobacillus reuteri DSM 20016  Bacteria  hitchhiker  0.00000331559  n/a   
 
 
-
 
NC_009565  TBFG_12575  Holliday junction resolvase-like protein  38.19 
 
 
170 aa  79.7  0.00000000000001  Mycobacterium tuberculosis F11  Bacteria  hitchhiker  0.00396279  normal  0.126571 
 
 
-
 
NC_011898  Ccel_2239  Holliday junction resolvase-like protein  35.37 
 
 
142 aa  80.1  0.00000000000001  Clostridium cellulolyticum H10  Bacteria  decreased coverage  0.0000140275  n/a   
 
 
-
 
NC_010320  Teth514_1491  Holliday junction resolvase-like protein  32.89 
 
 
139 aa  79.7  0.00000000000001  Thermoanaerobacter sp. X514  Bacteria  unclonable  0.0000000000748947  n/a   
 
 
-
 
NC_008146  Mmcs_2347  Holliday junction resolvase-like protein  35.81 
 
 
169 aa  79.3  0.00000000000002  Mycobacterium sp. MCS  Bacteria  normal  0.502005  n/a   
 
 
-
 
NC_008705  Mkms_2394  Holliday junction resolvase-like protein  35.81 
 
 
169 aa  79.3  0.00000000000002  Mycobacterium sp. KMS  Bacteria  normal  normal  0.345644 
 
 
-
 
NC_003909  BCE_4469  Holliday junction resolvase-like protein  32 
 
 
137 aa  78.2  0.00000000000003  Bacillus cereus ATCC 10987  Bacteria  decreased coverage  0.000000240455  n/a   
 
 
-
 
NC_005945  BAS4282  Holliday junction resolvase-like protein  32 
 
 
137 aa  78.2  0.00000000000003  Bacillus anthracis str. Sterne  Bacteria  hitchhiker  0.000000036093  n/a   
 
 
-
 
NC_005957  BT9727_4119  Holliday junction resolvase-like protein  32 
 
 
137 aa  78.2  0.00000000000003  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  decreased coverage  3.61572e-18  n/a   
 
 
-
 
NC_006274  BCZK4130  Holliday junction resolvase-like protein  32 
 
 
137 aa  78.2  0.00000000000003  Bacillus cereus E33L  Bacteria  unclonable  0.000000000000238321  n/a   
 
 
-
 
NC_007530  GBAA_4614  Holliday junction resolvase-like protein  32 
 
 
137 aa  78.2  0.00000000000003  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  decreased coverage  0.0000000000846091  n/a   
 
 
-
 
NC_011773  BCAH820_4466  Holliday junction resolvase-like protein  32 
 
 
137 aa  78.2  0.00000000000003  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.0000283196 
 
 
-
 
NC_009077  Mjls_2388  Holliday junction resolvase-like protein  35.81 
 
 
169 aa  78.6  0.00000000000003  Mycobacterium sp. JLS  Bacteria  normal  normal  0.0472019 
 
 
-
 
NC_011658  BCAH187_A4519  Holliday junction resolvase-like protein  32.43 
 
 
137 aa  77.8  0.00000000000004  Bacillus cereus AH187  Bacteria  hitchhiker  0.000203205  n/a   
 
 
-
 
NC_012850  Rleg_1714  Holliday junction resolvase-like protein  35.66 
 
 
164 aa  77.8  0.00000000000005  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.396791 
 
 
-
 
NC_013385  Adeg_1438  Holliday junction resolvase YqgF  36.13 
 
 
146 aa  77.8  0.00000000000005  Ammonifex degensii KC4  Bacteria  normal  0.0335959  n/a   
 
 
-
 
NC_008530  LGAS_0423  Holliday junction resolvase-like protein  34.62 
 
 
143 aa  77.4  0.00000000000006  Lactobacillus gasseri ATCC 33323  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_1819  Holliday junction resolvase YqgF  36 
 
 
190 aa  77  0.00000000000007  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0503115  normal 
 
 
-
 
NC_008686  Pden_0510  Holliday junction resolvase-like protein  34.72 
 
 
158 aa  77.4  0.00000000000007  Paracoccus denitrificans PD1222  Bacteria  normal  0.556579  normal 
 
 
-
 
NC_008009  Acid345_0556  Holliday junction resolvase YqgF  36.81 
 
 
153 aa  77  0.00000000000008  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.901255  normal  0.0480752 
 
 
-
 
NC_011830  Dhaf_3562  Holliday junction resolvase-like protein  32.65 
 
 
142 aa  77  0.00000000000009  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000000000000329746  n/a   
 
 
-
 
NC_013411  GYMC61_0964  Holliday junction resolvase YqgF  33.77 
 
 
138 aa  77  0.00000000000009  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013093  Amir_5264  Holliday junction resolvase YqgF  38.89 
 
 
170 aa  76.6  0.0000000000001  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_3762  Holliday junction resolvase YqgF  33.78 
 
 
175 aa  76.3  0.0000000000001  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.454353 
 
 
-
 
NC_007802  Jann_2181  Holliday junction resolvase YqgF  36.99 
 
 
145 aa  76.6  0.0000000000001  Jannaschia sp. CCS1  Bacteria  normal  0.659798  normal 
 
 
-
 
NC_009632  SaurJH1_1707  Holliday junction resolvase-like protein  32.88 
 
 
142 aa  76.6  0.0000000000001  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.24342  n/a   
 
 
-
 
NC_009487  SaurJH9_1673  Holliday junction resolvase-like protein  32.88 
 
 
142 aa  76.6  0.0000000000001  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.514842  n/a   
 
 
-
 
NC_002976  SERP1180  Holliday junction resolvase-like protein  33.56 
 
 
142 aa  75.5  0.0000000000002  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_1064  Holliday junction resolvase-like protein  35.17 
 
 
163 aa  75.9  0.0000000000002  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.282287  normal 
 
 
-
 
NC_007643  Rru_A3178  Holliday junction resolvase YqgF  32.88 
 
 
161 aa  75.9  0.0000000000002  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.825708  n/a   
 
 
-
 
NC_007958  RPD_3023  Holliday junction resolvase-like protein  33.33 
 
 
160 aa  75.9  0.0000000000002  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.438725  normal  0.394583 
 
 
-
 
NC_007964  Nham_2279  Holliday junction resolvase-like protein  32.41 
 
 
168 aa  75.9  0.0000000000002  Nitrobacter hamburgensis X14  Bacteria  normal  0.273152  n/a   
 
 
-
 
NC_008044  TM1040_0967  Holliday junction resolvase-like protein  31.25 
 
 
157 aa  75.5  0.0000000000002  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_5401  Holliday junction resolvase YqgF  33.78 
 
 
139 aa  75.5  0.0000000000002  Haliangium ochraceum DSM 14365  Bacteria  normal  0.616966  normal  0.68966 
 
 
-
 
NC_009523  RoseRS_3225  Holliday junction resolvase YqgF  31.29 
 
 
141 aa  76.3  0.0000000000002  Roseiflexus sp. RS-1  Bacteria  normal  0.387387  normal 
 
 
-
 
NC_008531  LEUM_0558  Holliday junction resolvase-like protein  32.67 
 
 
143 aa  75.5  0.0000000000003  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_1778  Holliday junction resolvase YqgF  35.14 
 
 
141 aa  75.1  0.0000000000003  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal  0.140554 
 
 
-
 
NC_009253  Dred_0775  Holliday junction resolvase YqgF  30 
 
 
137 aa  75.1  0.0000000000003  Desulfotomaculum reducens MI-1  Bacteria  unclonable  0.00000000463594  n/a   
 
 
-
 
NC_013131  Caci_2379  Holliday junction resolvase-like protein  33.56 
 
 
171 aa  74.7  0.0000000000004  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013174  Jden_1350  Holliday junction resolvase YqgF  32.92 
 
 
167 aa  74.7  0.0000000000004  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_011145  AnaeK_2633  Holliday junction resolvase-like protein  36.05 
 
 
137 aa  74.7  0.0000000000004  Anaeromyxobacter sp. K  Bacteria  normal  0.854397  n/a   
 
 
-
 
NC_009675  Anae109_2535  Holliday junction resolvase-like protein  33.33 
 
 
137 aa  75.1  0.0000000000004  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.52249 
 
 
-
 
NC_011369  Rleg2_1518  Holliday junction resolvase-like protein  34.97 
 
 
163 aa  75.1  0.0000000000004  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.793177 
 
 
-
 
NC_011989  Avi_1768  Holliday junction resolvase-like protein  34.25 
 
 
158 aa  74.3  0.0000000000005  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_008527  LACR_0138  Holliday junction resolvase-like protein  33.11 
 
 
143 aa  74.3  0.0000000000005  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_0742  Holliday junction resolvase-like protein  34.72 
 
 
161 aa  73.9  0.0000000000006  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0120989 
 
 
-
 
NC_007760  Adeh_1232  Holliday junction resolvase-like protein  35.37 
 
 
137 aa  73.9  0.0000000000006  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_2429  Holliday junction resolvase-like protein  33.1 
 
 
160 aa  74.3  0.0000000000006  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.0446184 
 
 
-
 
NC_011891  A2cp1_2727  Holliday junction resolvase-like protein  36.05 
 
 
137 aa  74.3  0.0000000000006  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_3314  Holliday junction resolvase YqgF  33.79 
 
 
163 aa  74.3  0.0000000000006  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_008528  OEOE_1165  RNase H-like ribonuclease  33.56 
 
 
144 aa  73.9  0.0000000000007  Oenococcus oeni PSU-1  Bacteria  normal  0.345189  n/a   
 
 
-
 
NC_013205  Aaci_2024  Holliday junction resolvase YqgF  30.61 
 
 
144 aa  73.6  0.0000000000009  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.330713  n/a   
 
 
-
 
NC_013525  Tter_0088  Holliday junction resolvase YqgF  34.67 
 
 
149 aa  73.6  0.0000000000009  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013173  Dbac_1790  Holliday junction resolvase YqgF  30.41 
 
 
133 aa  72.8  0.000000000001  Desulfomicrobium baculatum DSM 4028  Bacteria  decreased coverage  0.00751815  n/a   
 
 
-
 
NC_004116  SAG2090  Holliday junction resolvase-like protein  34.69 
 
 
136 aa  73.2  0.000000000001  Streptococcus agalactiae 2603V/R  Bacteria  hitchhiker  0.000724166  n/a   
 
 
-
 
NC_011899  Hore_05800  Holliday junction resolvase YqgF  34.87 
 
 
140 aa  73.2  0.000000000001  Halothermothrix orenii H 168  Bacteria  normal  0.209228  n/a   
 
 
-
 
NC_009485  BBta_4721  Holliday junction resolvase-like protein  31.72 
 
 
161 aa  73.2  0.000000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_008532  STER_1938  Holliday junction resolvase-like protein  34 
 
 
139 aa  73.2  0.000000000001  Streptococcus thermophilus LMD-9  Bacteria  unclonable  0.0000000471473  n/a   
 
 
-
 
NC_010001  Cphy_2297  Holliday junction resolvase YqgF  32.89 
 
 
150 aa  73.2  0.000000000001  Clostridium phytofermentans ISDg  Bacteria  normal  0.470334  n/a   
 
 
-
 
NC_008726  Mvan_2641  Holliday junction resolvase YqgF  32.43 
 
 
175 aa  73.2  0.000000000001  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_3713  Holliday junction resolvase YqgF  29.25 
 
 
146 aa  73.2  0.000000000001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0658941  hitchhiker  0.00476179 
 
 
-
 
NC_010725  Mpop_3519  Holliday junction resolvase YqgF  32.64 
 
 
165 aa  72.8  0.000000000002  Methylobacterium populi BJ001  Bacteria  normal  0.432695  normal 
 
 
-
 
NC_007406  Nwi_2004  Holliday junction resolvase-like protein  30.34 
 
 
163 aa  72.8  0.000000000002  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.166059  normal  0.662003 
 
 
-
 
NC_011757  Mchl_3643  Holliday junction resolvase YqgF  31.51 
 
 
165 aa  72.4  0.000000000002  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.724014 
 
 
-
 
NC_013159  Svir_15280  conserved hypothetical protein TIGR00250  34.03 
 
 
154 aa  72.8  0.000000000002  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.0307172  normal  0.652486 
 
 
-
 
NC_010505  Mrad2831_0475  Holliday junction resolvase YqgF  32.41 
 
 
170 aa  72.4  0.000000000002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.437798  normal  0.0955854 
 
 
-
 
NC_013235  Namu_3296  Holliday junction resolvase YqgF  37.34 
 
 
169 aa  72  0.000000000002  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.000134676  normal  0.0641237 
 
 
-
 
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