284 homologs were found in PanDaTox collection
for query gene Krad_3031 on replicon NC_009664
Organism: Kineococcus radiotolerans SRS30216



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009664  Krad_3031  Holliday junction resolvase YqgF  100 
 
 
188 aa  357  7e-98  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_2015  Holliday junction resolvase YqgF  61.81 
 
 
163 aa  151  5e-36  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.756916  normal  0.07881 
 
 
-
 
NC_013595  Sros_6093  endonuclease involved in recombination-like protein  56.69 
 
 
163 aa  148  4e-35  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0746227  normal 
 
 
-
 
NC_008578  Acel_1329  Holliday junction resolvase YqgF  51.79 
 
 
173 aa  135  3.0000000000000003e-31  Acidothermus cellulolyticus 11B  Bacteria  normal  0.0531797  normal  0.27422 
 
 
-
 
NC_007777  Francci3_3213  Holliday junction resolvase-like protein  49.06 
 
 
202 aa  132  3e-30  Frankia sp. CcI3  Bacteria  normal  0.0825611  normal 
 
 
-
 
NC_013131  Caci_2379  Holliday junction resolvase-like protein  55.92 
 
 
171 aa  131  5e-30  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_1819  Holliday junction resolvase YqgF  57.05 
 
 
190 aa  129  3e-29  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0503115  normal 
 
 
-
 
NC_014165  Tbis_2046  Holliday junction resolvase YqgF  50.89 
 
 
163 aa  126  2.0000000000000002e-28  Thermobispora bispora DSM 43833  Bacteria  normal  0.0425259  normal 
 
 
-
 
NC_014210  Ndas_3074  Holliday junction resolvase YqgF  50.31 
 
 
161 aa  126  2.0000000000000002e-28  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.459764 
 
 
-
 
NC_013172  Bfae_16350  conserved hypothetical protein TIGR00250  52.11 
 
 
181 aa  123  2e-27  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_2408  Holliday junction resolvase-like protein  49.02 
 
 
156 aa  122  3e-27  Nocardioides sp. JS614  Bacteria  normal  0.332292  n/a   
 
 
-
 
NC_009953  Sare_1820  Holliday junction resolvase YqgF  52.45 
 
 
153 aa  121  5e-27  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.0000610168 
 
 
-
 
NC_013174  Jden_1350  Holliday junction resolvase YqgF  47.71 
 
 
167 aa  120  8e-27  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_1829  Holliday junction resolvase YqgF  51.05 
 
 
153 aa  120  9.999999999999999e-27  Salinispora tropica CNB-440  Bacteria  normal  0.0551936  normal 
 
 
-
 
NC_008541  Arth_2277  Holliday junction resolvase YqgF  45.77 
 
 
199 aa  119  1.9999999999999998e-26  Arthrobacter sp. FB24  Bacteria  normal  0.117352  n/a   
 
 
-
 
NC_008146  Mmcs_2347  Holliday junction resolvase-like protein  48.28 
 
 
169 aa  117  7.999999999999999e-26  Mycobacterium sp. MCS  Bacteria  normal  0.502005  n/a   
 
 
-
 
NC_008705  Mkms_2394  Holliday junction resolvase-like protein  48.28 
 
 
169 aa  117  7.999999999999999e-26  Mycobacterium sp. KMS  Bacteria  normal  normal  0.345644 
 
 
-
 
NC_013441  Gbro_2321  Holliday junction resolvase YqgF  48.55 
 
 
143 aa  116  1.9999999999999998e-25  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_2388  Holliday junction resolvase-like protein  47.59 
 
 
169 aa  116  1.9999999999999998e-25  Mycobacterium sp. JLS  Bacteria  normal  normal  0.0472019 
 
 
-
 
NC_011886  Achl_2014  Holliday junction resolvase YqgF  44.37 
 
 
207 aa  115  3e-25  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.00000000330035 
 
 
-
 
NC_009921  Franean1_1695  Holliday junction resolvase-like protein  54.01 
 
 
188 aa  114  6e-25  Frankia sp. EAN1pec  Bacteria  normal  0.0458229  normal  0.165399 
 
 
-
 
NC_013521  Sked_17700  conserved hypothetical protein TIGR00250  53.21 
 
 
167 aa  114  1.0000000000000001e-24  Sanguibacter keddieii DSM 10542  Bacteria  hitchhiker  0.00726332  normal  0.269027 
 
 
-
 
NC_013947  Snas_3877  Holliday junction resolvase YqgF  47.89 
 
 
151 aa  112  2.0000000000000002e-24  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.843962  normal 
 
 
-
 
NC_013530  Xcel_1690  Holliday junction resolvase YqgF  52.11 
 
 
184 aa  111  7.000000000000001e-24  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.480738  n/a   
 
 
-
 
NC_013159  Svir_15280  conserved hypothetical protein TIGR00250  52.94 
 
 
154 aa  108  4.0000000000000004e-23  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.0307172  normal  0.652486 
 
 
-
 
NC_013169  Ksed_12520  conserved hypothetical protein TIGR00250  45.86 
 
 
161 aa  105  5e-22  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.101388  normal  0.418633 
 
 
-
 
NC_010655  Amuc_1191  Holliday junction resolvase YqgF  41.79 
 
 
141 aa  103  1e-21  Akkermansia muciniphila ATCC BAA-835  Bacteria  hitchhiker  0.0000237997  normal 
 
 
-
 
NC_013757  Gobs_3157  Holliday junction resolvase YqgF  46.67 
 
 
222 aa  103  2e-21  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.588989  n/a   
 
 
-
 
NC_013093  Amir_5264  Holliday junction resolvase YqgF  49.63 
 
 
170 aa  102  3e-21  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_2136  Holliday junction resolvase YqgF  49.02 
 
 
152 aa  101  5e-21  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.000271405  n/a   
 
 
-
 
NC_009338  Mflv_3762  Holliday junction resolvase YqgF  42.75 
 
 
175 aa  101  5e-21  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.454353 
 
 
-
 
NC_008726  Mvan_2641  Holliday junction resolvase YqgF  44.93 
 
 
175 aa  101  7e-21  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_009565  TBFG_12575  Holliday junction resolvase-like protein  45.19 
 
 
170 aa  97.8  7e-20  Mycobacterium tuberculosis F11  Bacteria  hitchhiker  0.00396279  normal  0.126571 
 
 
-
 
NC_013235  Namu_3296  Holliday junction resolvase YqgF  48.63 
 
 
169 aa  97.1  1e-19  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.000134676  normal  0.0641237 
 
 
-
 
NC_014158  Tpau_1976  Holliday junction resolvase YqgF  42.66 
 
 
161 aa  91.7  6e-18  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.133397  n/a   
 
 
-
 
NC_007333  Tfu_2069  Holliday junction resolvase-like protein  46.25 
 
 
159 aa  91.7  6e-18  Thermobifida fusca YX  Bacteria  normal  0.0705886  n/a   
 
 
-
 
NC_009523  RoseRS_3225  Holliday junction resolvase YqgF  37.41 
 
 
141 aa  89.4  3e-17  Roseiflexus sp. RS-1  Bacteria  normal  0.387387  normal 
 
 
-
 
NC_013721  HMPREF0424_0376  RNAse YqgF  37.25 
 
 
152 aa  89  4e-17  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_009767  Rcas_3713  Holliday junction resolvase YqgF  37.41 
 
 
146 aa  86.7  2e-16  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0658941  hitchhiker  0.00476179 
 
 
-
 
NC_008312  Tery_4379  Holliday junction resolvase-like protein  34.53 
 
 
149 aa  85.9  3e-16  Trichodesmium erythraeum IMS101  Bacteria  normal  0.556882  normal  0.251804 
 
 
-
 
NC_009675  Anae109_2535  Holliday junction resolvase-like protein  42.42 
 
 
137 aa  85.9  4e-16  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.52249 
 
 
-
 
NC_009012  Cthe_0153  Holliday junction resolvase-like protein  30.6 
 
 
141 aa  84.3  8e-16  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.0185653  n/a   
 
 
-
 
NC_007413  Ava_3804  Holliday junction resolvase-like protein  35.77 
 
 
151 aa  84.3  9e-16  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0796335  normal 
 
 
-
 
NC_013203  Apar_0458  Holliday junction resolvase YqgF  39.16 
 
 
140 aa  82.4  0.000000000000004  Atopobium parvulum DSM 20469  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_2684  Holliday junction resolvase-like protein  43.07 
 
 
160 aa  82.4  0.000000000000004  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.173322  n/a   
 
 
-
 
NC_007958  RPD_3023  Holliday junction resolvase-like protein  38.52 
 
 
160 aa  82.4  0.000000000000004  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.438725  normal  0.394583 
 
 
-
 
NC_009049  Rsph17029_1342  Holliday junction resolvase-like protein  43.07 
 
 
160 aa  82.4  0.000000000000004  Rhodobacter sphaeroides ATCC 17029  Bacteria  decreased coverage  0.00888056  normal  0.184568 
 
 
-
 
NC_007604  Synpcc7942_2398  Holliday junction resolvase-like protein  35.56 
 
 
149 aa  81.6  0.000000000000005  Synechococcus elongatus PCC 7942  Bacteria  normal  0.0366153  hitchhiker  0.00151496 
 
 
-
 
NC_011891  A2cp1_2727  Holliday junction resolvase-like protein  43.94 
 
 
137 aa  81.6  0.000000000000005  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_3922  Holliday junction resolvase YqgF  41.04 
 
 
176 aa  81.6  0.000000000000006  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_1879  Holliday junction resolvase-like protein  40.15 
 
 
160 aa  81.3  0.000000000000008  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.620593  normal 
 
 
-
 
NC_009972  Haur_3633  Holliday junction resolvase YqgF  36.84 
 
 
158 aa  81.3  0.000000000000008  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_1232  Holliday junction resolvase-like protein  43.94 
 
 
137 aa  81.3  0.000000000000008  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_008346  Swol_0470  Holliday junction resolvase YqgF  36.36 
 
 
141 aa  81.3  0.000000000000008  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  unclonable  0.00000000599692  n/a   
 
 
-
 
NC_014248  Aazo_4148  Holliday junction resolvase YqgF  36.55 
 
 
158 aa  81.3  0.000000000000009  'Nostoc azollae' 0708  Bacteria  normal  0.927535  n/a   
 
 
-
 
NC_011726  PCC8801_1942  Holliday junction resolvase-like protein  34.81 
 
 
139 aa  80.5  0.00000000000001  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_010816  BLD_0615  putative endonuclease for recombination  35.76 
 
 
152 aa  80.5  0.00000000000001  Bifidobacterium longum DJO10A  Bacteria  normal  0.105236  n/a   
 
 
-
 
NC_011145  AnaeK_2633  Holliday junction resolvase-like protein  43.18 
 
 
137 aa  80.9  0.00000000000001  Anaeromyxobacter sp. K  Bacteria  normal  0.854397  n/a   
 
 
-
 
NC_013165  Shel_07810  conserved hypothetical protein TIGR00250  41.35 
 
 
138 aa  80.9  0.00000000000001  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal  0.0182311 
 
 
-
 
NC_013161  Cyan8802_1969  Holliday junction resolvase-like protein  34.81 
 
 
139 aa  80.5  0.00000000000001  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.0212683 
 
 
-
 
NC_011899  Hore_05800  Holliday junction resolvase YqgF  34.53 
 
 
140 aa  80.1  0.00000000000002  Halothermothrix orenii H 168  Bacteria  normal  0.209228  n/a   
 
 
-
 
NC_008261  CPF_2031  Holliday junction resolvase-like protein  34.85 
 
 
137 aa  79.7  0.00000000000002  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_1748  Holliday junction resolvase-like protein  34.85 
 
 
137 aa  79.7  0.00000000000002  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_0094  Holliday junction resolvase YqgF  36.96 
 
 
142 aa  80.1  0.00000000000002  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.0018567  normal 
 
 
-
 
NC_013440  Hoch_5401  Holliday junction resolvase YqgF  39.71 
 
 
139 aa  79.3  0.00000000000003  Haliangium ochraceum DSM 14365  Bacteria  normal  0.616966  normal  0.68966 
 
 
-
 
NC_013522  Taci_1032  Holliday junction resolvase YqgF  34.56 
 
 
142 aa  79  0.00000000000004  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_2429  Holliday junction resolvase-like protein  37.04 
 
 
160 aa  79  0.00000000000004  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.0446184 
 
 
-
 
NC_008686  Pden_0510  Holliday junction resolvase-like protein  38.69 
 
 
158 aa  78.2  0.00000000000006  Paracoccus denitrificans PD1222  Bacteria  normal  0.556579  normal 
 
 
-
 
NC_008530  LGAS_0423  Holliday junction resolvase-like protein  36.23 
 
 
143 aa  78.2  0.00000000000007  Lactobacillus gasseri ATCC 33323  Bacteria  normal  normal 
 
 
-
 
NC_011898  Ccel_2239  Holliday junction resolvase-like protein  30.3 
 
 
142 aa  78.2  0.00000000000007  Clostridium cellulolyticum H10  Bacteria  decreased coverage  0.0000140275  n/a   
 
 
-
 
NC_013204  Elen_2554  Holliday junction resolvase YqgF  38.69 
 
 
138 aa  77.4  0.0000000000001  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_007644  Moth_1640  Holliday junction resolvase YqgF  38.64 
 
 
140 aa  77.4  0.0000000000001  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.278901  normal  0.163549 
 
 
-
 
NC_011729  PCC7424_3098  Holliday junction resolvase-like protein  34.56 
 
 
151 aa  77  0.0000000000001  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_013525  Tter_0088  Holliday junction resolvase YqgF  38.57 
 
 
149 aa  77  0.0000000000002  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_007964  Nham_2279  Holliday junction resolvase-like protein  37.78 
 
 
168 aa  77  0.0000000000002  Nitrobacter hamburgensis X14  Bacteria  normal  0.273152  n/a   
 
 
-
 
NC_008009  Acid345_0556  Holliday junction resolvase YqgF  34.85 
 
 
153 aa  77  0.0000000000002  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.901255  normal  0.0480752 
 
 
-
 
NC_008347  Mmar10_1708  Holliday junction resolvase YqgF  37.04 
 
 
151 aa  76.6  0.0000000000002  Maricaulis maris MCS10  Bacteria  normal  normal  0.180151 
 
 
-
 
NC_009487  SaurJH9_1673  Holliday junction resolvase-like protein  31.34 
 
 
142 aa  75.9  0.0000000000003  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.514842  n/a   
 
 
-
 
NC_002976  SERP1180  Holliday junction resolvase-like protein  32.09 
 
 
142 aa  75.9  0.0000000000003  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_012803  Mlut_12710  putative Holliday junction resolvase  49.67 
 
 
189 aa  75.9  0.0000000000003  Micrococcus luteus NCTC 2665  Bacteria  normal  0.84059  n/a   
 
 
-
 
NC_008531  LEUM_0558  Holliday junction resolvase-like protein  33.82 
 
 
143 aa  75.9  0.0000000000003  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_1707  Holliday junction resolvase-like protein  31.34 
 
 
142 aa  75.9  0.0000000000003  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.24342  n/a   
 
 
-
 
NC_009513  Lreu_0535  Holliday junction resolvase-like protein  32.85 
 
 
147 aa  75.1  0.0000000000005  Lactobacillus reuteri DSM 20016  Bacteria  hitchhiker  0.00000331559  n/a   
 
 
-
 
NC_011004  Rpal_3523  Holliday junction resolvase-like protein  40.74 
 
 
160 aa  75.5  0.0000000000005  Rhodopseudomonas palustris TIE-1  Bacteria  hitchhiker  0.00889049  n/a   
 
 
-
 
NC_009952  Dshi_1064  Holliday junction resolvase-like protein  36.96 
 
 
163 aa  74.7  0.0000000000008  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.282287  normal 
 
 
-
 
NC_013411  GYMC61_0964  Holliday junction resolvase YqgF  36.76 
 
 
138 aa  74.3  0.0000000000009  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009485  BBta_4721  Holliday junction resolvase-like protein  35.56 
 
 
161 aa  73.9  0.000000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_011661  Dtur_1024  Holliday junction resolvase YqgF  31.58 
 
 
141 aa  73.6  0.000000000002  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_3314  Holliday junction resolvase YqgF  38.64 
 
 
163 aa  73.2  0.000000000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_3562  Holliday junction resolvase-like protein  32.39 
 
 
142 aa  73.6  0.000000000002  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000000000000329746  n/a   
 
 
-
 
NC_007643  Rru_A3178  Holliday junction resolvase YqgF  39.55 
 
 
161 aa  73.6  0.000000000002  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.825708  n/a   
 
 
-
 
NC_008044  TM1040_0967  Holliday junction resolvase-like protein  36.84 
 
 
157 aa  72.8  0.000000000002  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_013216  Dtox_2265  Holliday junction resolvase YqgF  33.08 
 
 
139 aa  73.6  0.000000000002  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  hitchhiker  0.0000233904 
 
 
-
 
NC_013061  Phep_0074  Holliday junction resolvase YqgF  29.71 
 
 
138 aa  73.6  0.000000000002  Pedobacter heparinus DSM 2366  Bacteria  normal  0.974882  normal 
 
 
-
 
NC_009719  Plav_2841  Holliday junction resolvase YqgF  35.56 
 
 
182 aa  72.4  0.000000000003  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.636675  normal  0.911101 
 
 
-
 
NC_007406  Nwi_2004  Holliday junction resolvase-like protein  34.69 
 
 
163 aa  72.4  0.000000000003  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.166059  normal  0.662003 
 
 
-
 
NC_013205  Aaci_2024  Holliday junction resolvase YqgF  38.17 
 
 
144 aa  72.8  0.000000000003  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.330713  n/a   
 
 
-
 
NC_013173  Dbac_1790  Holliday junction resolvase YqgF  33.33 
 
 
133 aa  72.4  0.000000000004  Desulfomicrobium baculatum DSM 4028  Bacteria  decreased coverage  0.00751815  n/a   
 
 
-
 
NC_011884  Cyan7425_2514  Holliday junction resolvase-like protein  32.61 
 
 
150 aa  71.6  0.000000000006  Cyanothece sp. PCC 7425  Bacteria  normal  0.36708  normal 
 
 
-
 
NC_009484  Acry_0873  Holliday junction resolvase YqgF  40.15 
 
 
158 aa  71.6  0.000000000006  Acidiphilium cryptum JF-5  Bacteria  normal  0.205729  n/a   
 
 
-
 
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