290 homologs were found in PanDaTox collection
for query gene Svir_15280 on replicon NC_013159
Organism: Saccharomonospora viridis DSM 43017



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013159  Svir_15280  conserved hypothetical protein TIGR00250  100 
 
 
154 aa  295  2e-79  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.0307172  normal  0.652486 
 
 
-
 
NC_013093  Amir_5264  Holliday junction resolvase YqgF  70.21 
 
 
170 aa  181  3e-45  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_1820  Holliday junction resolvase YqgF  65.49 
 
 
153 aa  166  1e-40  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.0000610168 
 
 
-
 
NC_008146  Mmcs_2347  Holliday junction resolvase-like protein  59.18 
 
 
169 aa  161  3e-39  Mycobacterium sp. MCS  Bacteria  normal  0.502005  n/a   
 
 
-
 
NC_008705  Mkms_2394  Holliday junction resolvase-like protein  59.18 
 
 
169 aa  161  3e-39  Mycobacterium sp. KMS  Bacteria  normal  normal  0.345644 
 
 
-
 
NC_009077  Mjls_2388  Holliday junction resolvase-like protein  58.5 
 
 
169 aa  160  9e-39  Mycobacterium sp. JLS  Bacteria  normal  normal  0.0472019 
 
 
-
 
NC_008726  Mvan_2641  Holliday junction resolvase YqgF  60.69 
 
 
175 aa  159  2e-38  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_1829  Holliday junction resolvase YqgF  61.49 
 
 
153 aa  158  3e-38  Salinispora tropica CNB-440  Bacteria  normal  0.0551936  normal 
 
 
-
 
NC_009338  Mflv_3762  Holliday junction resolvase YqgF  55.17 
 
 
175 aa  155  2e-37  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.454353 
 
 
-
 
NC_009565  TBFG_12575  Holliday junction resolvase-like protein  61.22 
 
 
170 aa  144  4.0000000000000006e-34  Mycobacterium tuberculosis F11  Bacteria  hitchhiker  0.00396279  normal  0.126571 
 
 
-
 
NC_013947  Snas_3877  Holliday junction resolvase YqgF  55.48 
 
 
151 aa  142  1e-33  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.843962  normal 
 
 
-
 
NC_007777  Francci3_3213  Holliday junction resolvase-like protein  51.02 
 
 
202 aa  137  4.999999999999999e-32  Frankia sp. CcI3  Bacteria  normal  0.0825611  normal 
 
 
-
 
NC_013441  Gbro_2321  Holliday junction resolvase YqgF  55.47 
 
 
143 aa  136  8.999999999999999e-32  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_6093  endonuclease involved in recombination-like protein  55.15 
 
 
163 aa  135  1e-31  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0746227  normal 
 
 
-
 
NC_013757  Gobs_3157  Holliday junction resolvase YqgF  56.72 
 
 
222 aa  131  3.9999999999999996e-30  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.588989  n/a   
 
 
-
 
NC_009921  Franean1_1695  Holliday junction resolvase-like protein  52.48 
 
 
188 aa  127  4.0000000000000003e-29  Frankia sp. EAN1pec  Bacteria  normal  0.0458229  normal  0.165399 
 
 
-
 
NC_008578  Acel_1329  Holliday junction resolvase YqgF  55.47 
 
 
173 aa  125  3e-28  Acidothermus cellulolyticus 11B  Bacteria  normal  0.0531797  normal  0.27422 
 
 
-
 
NC_014158  Tpau_1976  Holliday junction resolvase YqgF  48 
 
 
161 aa  120  6e-27  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.133397  n/a   
 
 
-
 
NC_012669  Bcav_2015  Holliday junction resolvase YqgF  51.49 
 
 
163 aa  119  9.999999999999999e-27  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.756916  normal  0.07881 
 
 
-
 
NC_008699  Noca_2408  Holliday junction resolvase-like protein  52.14 
 
 
156 aa  117  3.9999999999999996e-26  Nocardioides sp. JS614  Bacteria  normal  0.332292  n/a   
 
 
-
 
NC_014165  Tbis_2046  Holliday junction resolvase YqgF  53.24 
 
 
163 aa  117  7e-26  Thermobispora bispora DSM 43833  Bacteria  normal  0.0425259  normal 
 
 
-
 
NC_014151  Cfla_1819  Holliday junction resolvase YqgF  51.77 
 
 
190 aa  111  4.0000000000000004e-24  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0503115  normal 
 
 
-
 
NC_008541  Arth_2277  Holliday junction resolvase YqgF  48.95 
 
 
199 aa  109  1.0000000000000001e-23  Arthrobacter sp. FB24  Bacteria  normal  0.117352  n/a   
 
 
-
 
NC_013510  Tcur_2136  Holliday junction resolvase YqgF  54.03 
 
 
152 aa  109  2.0000000000000002e-23  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.000271405  n/a   
 
 
-
 
NC_013235  Namu_3296  Holliday junction resolvase YqgF  51.95 
 
 
169 aa  108  3e-23  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.000134676  normal  0.0641237 
 
 
-
 
NC_014210  Ndas_3074  Holliday junction resolvase YqgF  49.3 
 
 
161 aa  105  2e-22  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.459764 
 
 
-
 
NC_013521  Sked_17700  conserved hypothetical protein TIGR00250  53.15 
 
 
167 aa  105  2e-22  Sanguibacter keddieii DSM 10542  Bacteria  hitchhiker  0.00726332  normal  0.269027 
 
 
-
 
NC_011886  Achl_2014  Holliday junction resolvase YqgF  44.76 
 
 
207 aa  103  9e-22  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.00000000330035 
 
 
-
 
NC_009664  Krad_3031  Holliday junction resolvase YqgF  53.28 
 
 
188 aa  102  2e-21  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_1690  Holliday junction resolvase YqgF  46.94 
 
 
184 aa  101  3e-21  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.480738  n/a   
 
 
-
 
NC_013131  Caci_2379  Holliday junction resolvase-like protein  49.66 
 
 
171 aa  99.8  1e-20  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013174  Jden_1350  Holliday junction resolvase YqgF  42.58 
 
 
167 aa  98.2  3e-20  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_009012  Cthe_0153  Holliday junction resolvase-like protein  36.43 
 
 
141 aa  97.1  8e-20  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.0185653  n/a   
 
 
-
 
NC_009767  Rcas_3713  Holliday junction resolvase YqgF  42.34 
 
 
146 aa  96.7  1e-19  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0658941  hitchhiker  0.00476179 
 
 
-
 
NC_013172  Bfae_16350  conserved hypothetical protein TIGR00250  45.58 
 
 
181 aa  95.9  2e-19  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_3633  Holliday junction resolvase YqgF  40.43 
 
 
158 aa  95.5  2e-19  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_2100  Holliday junction resolvase-like protein  38.85 
 
 
146 aa  91.7  3e-18  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_013169  Ksed_12520  conserved hypothetical protein TIGR00250  48.15 
 
 
161 aa  90.9  5e-18  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.101388  normal  0.418633 
 
 
-
 
NC_009523  RoseRS_3225  Holliday junction resolvase YqgF  39.13 
 
 
141 aa  90.5  8e-18  Roseiflexus sp. RS-1  Bacteria  normal  0.387387  normal 
 
 
-
 
NC_009253  Dred_0775  Holliday junction resolvase YqgF  35.77 
 
 
137 aa  86.3  1e-16  Desulfotomaculum reducens MI-1  Bacteria  unclonable  0.00000000463594  n/a   
 
 
-
 
NC_010655  Amuc_1191  Holliday junction resolvase YqgF  36.62 
 
 
141 aa  86.7  1e-16  Akkermansia muciniphila ATCC BAA-835  Bacteria  hitchhiker  0.0000237997  normal 
 
 
-
 
NC_013165  Shel_07810  conserved hypothetical protein TIGR00250  40.88 
 
 
138 aa  86.3  1e-16  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal  0.0182311 
 
 
-
 
NC_011831  Cagg_0094  Holliday junction resolvase YqgF  41.79 
 
 
142 aa  85.9  2e-16  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.0018567  normal 
 
 
-
 
NC_008530  LGAS_0423  Holliday junction resolvase-like protein  39.86 
 
 
143 aa  84.7  4e-16  Lactobacillus gasseri ATCC 33323  Bacteria  normal  normal 
 
 
-
 
NC_008312  Tery_4379  Holliday junction resolvase-like protein  36.57 
 
 
149 aa  84.3  5e-16  Trichodesmium erythraeum IMS101  Bacteria  normal  0.556882  normal  0.251804 
 
 
-
 
NC_013216  Dtox_2265  Holliday junction resolvase YqgF  34.06 
 
 
139 aa  82.8  0.000000000000001  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  hitchhiker  0.0000233904 
 
 
-
 
NC_007614  Nmul_A2479  Holliday junction resolvase-like protein  39.6 
 
 
151 aa  83.2  0.000000000000001  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_1491  Holliday junction resolvase-like protein  35.04 
 
 
139 aa  82  0.000000000000002  Thermoanaerobacter sp. X514  Bacteria  unclonable  0.0000000000748947  n/a   
 
 
-
 
NC_007644  Moth_1640  Holliday junction resolvase YqgF  39.55 
 
 
140 aa  82.4  0.000000000000002  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.278901  normal  0.163549 
 
 
-
 
NC_002976  SERP1180  Holliday junction resolvase-like protein  34.33 
 
 
142 aa  82  0.000000000000003  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_013721  HMPREF0424_0376  RNAse YqgF  34.46 
 
 
152 aa  82  0.000000000000003  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_013205  Aaci_2024  Holliday junction resolvase YqgF  38.69 
 
 
144 aa  81.6  0.000000000000004  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.330713  n/a   
 
 
-
 
NC_009632  SaurJH1_1707  Holliday junction resolvase-like protein  33.58 
 
 
142 aa  80.5  0.000000000000007  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.24342  n/a   
 
 
-
 
NC_009487  SaurJH9_1673  Holliday junction resolvase-like protein  33.58 
 
 
142 aa  80.5  0.000000000000007  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.514842  n/a   
 
 
-
 
NC_013525  Tter_0088  Holliday junction resolvase YqgF  42.34 
 
 
149 aa  80.1  0.00000000000001  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_007760  Adeh_1232  Holliday junction resolvase-like protein  40.15 
 
 
137 aa  79.7  0.00000000000001  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_2297  Holliday junction resolvase YqgF  35.29 
 
 
150 aa  79  0.00000000000002  Clostridium phytofermentans ISDg  Bacteria  normal  0.470334  n/a   
 
 
-
 
NC_011145  AnaeK_2633  Holliday junction resolvase-like protein  39.42 
 
 
137 aa  79.3  0.00000000000002  Anaeromyxobacter sp. K  Bacteria  normal  0.854397  n/a   
 
 
-
 
NC_011891  A2cp1_2727  Holliday junction resolvase-like protein  39.42 
 
 
137 aa  79  0.00000000000002  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_2239  Holliday junction resolvase-like protein  29.85 
 
 
142 aa  79  0.00000000000002  Clostridium cellulolyticum H10  Bacteria  decreased coverage  0.0000140275  n/a   
 
 
-
 
NC_008527  LACR_0138  Holliday junction resolvase-like protein  35.51 
 
 
143 aa  78.6  0.00000000000003  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  n/a   
 
 
-
 
NC_009513  Lreu_0535  Holliday junction resolvase-like protein  31.25 
 
 
147 aa  78.2  0.00000000000004  Lactobacillus reuteri DSM 20016  Bacteria  hitchhiker  0.00000331559  n/a   
 
 
-
 
NC_008346  Swol_0470  Holliday junction resolvase YqgF  34.81 
 
 
141 aa  78.2  0.00000000000004  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  unclonable  0.00000000599692  n/a   
 
 
-
 
NC_013171  Apre_0938  Holliday junction resolvase YqgF  32.85 
 
 
139 aa  77.8  0.00000000000006  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_2031  Holliday junction resolvase-like protein  31.34 
 
 
137 aa  77  0.00000000000008  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_1748  Holliday junction resolvase-like protein  31.34 
 
 
137 aa  77  0.00000000000008  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_2535  Holliday junction resolvase-like protein  39.13 
 
 
137 aa  77  0.00000000000008  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.52249 
 
 
-
 
NC_004116  SAG2090  Holliday junction resolvase-like protein  35.82 
 
 
136 aa  77  0.00000000000009  Streptococcus agalactiae 2603V/R  Bacteria  hitchhiker  0.000724166  n/a   
 
 
-
 
NC_013204  Elen_2554  Holliday junction resolvase YqgF  36.96 
 
 
138 aa  77  0.00000000000009  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_3804  Holliday junction resolvase-like protein  34.33 
 
 
151 aa  76.6  0.0000000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0796335  normal 
 
 
-
 
NC_003909  BCE_4469  Holliday junction resolvase-like protein  34.31 
 
 
137 aa  75.9  0.0000000000002  Bacillus cereus ATCC 10987  Bacteria  decreased coverage  0.000000240455  n/a   
 
 
-
 
NC_005945  BAS4282  Holliday junction resolvase-like protein  34.31 
 
 
137 aa  75.9  0.0000000000002  Bacillus anthracis str. Sterne  Bacteria  hitchhiker  0.000000036093  n/a   
 
 
-
 
NC_005957  BT9727_4119  Holliday junction resolvase-like protein  34.31 
 
 
137 aa  75.9  0.0000000000002  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  decreased coverage  3.61572e-18  n/a   
 
 
-
 
NC_006274  BCZK4130  Holliday junction resolvase-like protein  34.31 
 
 
137 aa  75.9  0.0000000000002  Bacillus cereus E33L  Bacteria  unclonable  0.000000000000238321  n/a   
 
 
-
 
NC_013411  GYMC61_0964  Holliday junction resolvase YqgF  36.5 
 
 
138 aa  75.9  0.0000000000002  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011773  BCAH820_4466  Holliday junction resolvase-like protein  34.31 
 
 
137 aa  75.9  0.0000000000002  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.0000283196 
 
 
-
 
NC_007530  GBAA_4614  Holliday junction resolvase-like protein  34.31 
 
 
137 aa  75.9  0.0000000000002  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  decreased coverage  0.0000000000846091  n/a   
 
 
-
 
NC_008009  Acid345_0556  Holliday junction resolvase YqgF  34.93 
 
 
153 aa  75.5  0.0000000000002  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.901255  normal  0.0480752 
 
 
-
 
NC_010718  Nther_1778  Holliday junction resolvase YqgF  30.6 
 
 
141 aa  75.5  0.0000000000002  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal  0.140554 
 
 
-
 
NC_008528  OEOE_1165  RNase H-like ribonuclease  33.09 
 
 
144 aa  75.9  0.0000000000002  Oenococcus oeni PSU-1  Bacteria  normal  0.345189  n/a   
 
 
-
 
NC_008531  LEUM_0558  Holliday junction resolvase-like protein  33.81 
 
 
143 aa  75.9  0.0000000000002  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_008686  Pden_0510  Holliday junction resolvase-like protein  39.57 
 
 
158 aa  75.5  0.0000000000002  Paracoccus denitrificans PD1222  Bacteria  normal  0.556579  normal 
 
 
-
 
NC_010816  BLD_0615  putative endonuclease for recombination  36.81 
 
 
152 aa  75.5  0.0000000000003  Bifidobacterium longum DJO10A  Bacteria  normal  0.105236  n/a   
 
 
-
 
NC_009674  Bcer98_3099  Holliday junction resolvase-like protein  35.77 
 
 
137 aa  75.5  0.0000000000003  Bacillus cytotoxicus NVH 391-98  Bacteria  hitchhiker  0.00212776  n/a   
 
 
-
 
NC_014248  Aazo_4148  Holliday junction resolvase YqgF  32.86 
 
 
158 aa  75.5  0.0000000000003  'Nostoc azollae' 0708  Bacteria  normal  0.927535  n/a   
 
 
-
 
NC_011729  PCC7424_3098  Holliday junction resolvase-like protein  35.07 
 
 
151 aa  75.1  0.0000000000003  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_012793  GWCH70_2488  Holliday junction resolvase YqgF  35.04 
 
 
138 aa  74.7  0.0000000000004  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.0000000680199  n/a   
 
 
-
 
NC_007333  Tfu_2069  Holliday junction resolvase-like protein  47.18 
 
 
159 aa  75.1  0.0000000000004  Thermobifida fusca YX  Bacteria  normal  0.0705886  n/a   
 
 
-
 
NC_011658  BCAH187_A4519  Holliday junction resolvase-like protein  34.31 
 
 
137 aa  74.3  0.0000000000005  Bacillus cereus AH187  Bacteria  hitchhiker  0.000203205  n/a   
 
 
-
 
NC_008532  STER_1938  Holliday junction resolvase-like protein  35.77 
 
 
139 aa  74.3  0.0000000000006  Streptococcus thermophilus LMD-9  Bacteria  unclonable  0.0000000471473  n/a   
 
 
-
 
NC_011830  Dhaf_3562  Holliday junction resolvase-like protein  34.33 
 
 
142 aa  73.9  0.0000000000008  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000000000000329746  n/a   
 
 
-
 
NC_011772  BCG9842_B0730  Holliday junction resolvase-like protein  33.58 
 
 
137 aa  73.9  0.0000000000008  Bacillus cereus G9842  Bacteria  decreased coverage  0.0000000542239  normal 
 
 
-
 
NC_013203  Apar_0458  Holliday junction resolvase YqgF  35.21 
 
 
140 aa  73.2  0.000000000001  Atopobium parvulum DSM 20469  Bacteria  normal  normal 
 
 
-
 
NC_006368  lpp0637  Holliday junction resolvase-like protein  35.07 
 
 
139 aa  72.4  0.000000000002  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_009049  Rsph17029_1342  Holliday junction resolvase-like protein  36.24 
 
 
160 aa  72.8  0.000000000002  Rhodobacter sphaeroides ATCC 17029  Bacteria  decreased coverage  0.00888056  normal  0.184568 
 
 
-
 
NC_007493  RSP_2684  Holliday junction resolvase-like protein  36.24 
 
 
160 aa  72.8  0.000000000002  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.173322  n/a   
 
 
-
 
NC_013385  Adeg_1438  Holliday junction resolvase YqgF  36.76 
 
 
146 aa  72.4  0.000000000002  Ammonifex degensii KC4  Bacteria  normal  0.0335959  n/a   
 
 
-
 
NC_013517  Sterm_2739  Holliday junction resolvase YqgF  33.58 
 
 
137 aa  72  0.000000000003  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A4506  Holliday junction resolvase-like protein  33.58 
 
 
137 aa  72  0.000000000003  Bacillus cereus B4264  Bacteria  normal  0.860088  n/a   
 
 
-
 
NC_010184  BcerKBAB4_4233  Holliday junction resolvase-like protein  32.85 
 
 
137 aa  72  0.000000000003  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.000272031  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>