More than 300 homologs were found in PanDaTox collection
for query gene Ksed_12520 on replicon NC_013169
Organism: Kytococcus sedentarius DSM 20547



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013169  Ksed_12520  conserved hypothetical protein TIGR00250  100 
 
 
161 aa  305  2.0000000000000002e-82  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.101388  normal  0.418633 
 
 
-
 
NC_013131  Caci_2379  Holliday junction resolvase-like protein  53.57 
 
 
171 aa  120  7e-27  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_3157  Holliday junction resolvase YqgF  53.24 
 
 
222 aa  117  9e-26  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.588989  n/a   
 
 
-
 
NC_014151  Cfla_1819  Holliday junction resolvase YqgF  53.16 
 
 
190 aa  115  1.9999999999999998e-25  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0503115  normal 
 
 
-
 
NC_014158  Tpau_1976  Holliday junction resolvase YqgF  53.24 
 
 
161 aa  114  6.9999999999999995e-25  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.133397  n/a   
 
 
-
 
NC_012669  Bcav_2015  Holliday junction resolvase YqgF  52.63 
 
 
163 aa  113  1.0000000000000001e-24  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.756916  normal  0.07881 
 
 
-
 
NC_013595  Sros_6093  endonuclease involved in recombination-like protein  50 
 
 
163 aa  110  9e-24  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0746227  normal 
 
 
-
 
NC_007777  Francci3_3213  Holliday junction resolvase-like protein  52.17 
 
 
202 aa  107  6e-23  Frankia sp. CcI3  Bacteria  normal  0.0825611  normal 
 
 
-
 
NC_013530  Xcel_1690  Holliday junction resolvase YqgF  50.68 
 
 
184 aa  105  2e-22  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.480738  n/a   
 
 
-
 
NC_009921  Franean1_1695  Holliday junction resolvase-like protein  50 
 
 
188 aa  105  2e-22  Frankia sp. EAN1pec  Bacteria  normal  0.0458229  normal  0.165399 
 
 
-
 
NC_009077  Mjls_2388  Holliday junction resolvase-like protein  54.81 
 
 
169 aa  104  5e-22  Mycobacterium sp. JLS  Bacteria  normal  normal  0.0472019 
 
 
-
 
NC_008146  Mmcs_2347  Holliday junction resolvase-like protein  54.81 
 
 
169 aa  103  1e-21  Mycobacterium sp. MCS  Bacteria  normal  0.502005  n/a   
 
 
-
 
NC_008705  Mkms_2394  Holliday junction resolvase-like protein  54.81 
 
 
169 aa  103  1e-21  Mycobacterium sp. KMS  Bacteria  normal  normal  0.345644 
 
 
-
 
NC_008726  Mvan_2641  Holliday junction resolvase YqgF  53.33 
 
 
175 aa  102  3e-21  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_013174  Jden_1350  Holliday junction resolvase YqgF  48.08 
 
 
167 aa  99.4  2e-20  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_3877  Holliday junction resolvase YqgF  45.77 
 
 
151 aa  99.8  2e-20  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.843962  normal 
 
 
-
 
NC_014165  Tbis_2046  Holliday junction resolvase YqgF  54.48 
 
 
163 aa  99  2e-20  Thermobispora bispora DSM 43833  Bacteria  normal  0.0425259  normal 
 
 
-
 
NC_009338  Mflv_3762  Holliday junction resolvase YqgF  51.85 
 
 
175 aa  99.4  2e-20  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.454353 
 
 
-
 
NC_013172  Bfae_16350  conserved hypothetical protein TIGR00250  44.3 
 
 
181 aa  97.8  6e-20  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_2321  Holliday junction resolvase YqgF  50.37 
 
 
143 aa  97.4  7e-20  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_009380  Strop_1829  Holliday junction resolvase YqgF  50.35 
 
 
153 aa  97.1  1e-19  Salinispora tropica CNB-440  Bacteria  normal  0.0551936  normal 
 
 
-
 
NC_009565  TBFG_12575  Holliday junction resolvase-like protein  51.09 
 
 
170 aa  96.3  1e-19  Mycobacterium tuberculosis F11  Bacteria  hitchhiker  0.00396279  normal  0.126571 
 
 
-
 
NC_009953  Sare_1820  Holliday junction resolvase YqgF  49.65 
 
 
153 aa  95.5  2e-19  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.0000610168 
 
 
-
 
NC_008699  Noca_2408  Holliday junction resolvase-like protein  46.62 
 
 
156 aa  95.9  2e-19  Nocardioides sp. JS614  Bacteria  normal  0.332292  n/a   
 
 
-
 
NC_010816  BLD_0615  putative endonuclease for recombination  41.22 
 
 
152 aa  94.4  6e-19  Bifidobacterium longum DJO10A  Bacteria  normal  0.105236  n/a   
 
 
-
 
NC_013510  Tcur_2136  Holliday junction resolvase YqgF  47.71 
 
 
152 aa  92.4  2e-18  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.000271405  n/a   
 
 
-
 
NC_009523  RoseRS_3225  Holliday junction resolvase YqgF  39.42 
 
 
141 aa  91.7  4e-18  Roseiflexus sp. RS-1  Bacteria  normal  0.387387  normal 
 
 
-
 
NC_009664  Krad_3031  Holliday junction resolvase YqgF  44.16 
 
 
188 aa  90.5  8e-18  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_2277  Holliday junction resolvase YqgF  43.62 
 
 
199 aa  89.7  2e-17  Arthrobacter sp. FB24  Bacteria  normal  0.117352  n/a   
 
 
-
 
NC_013521  Sked_17700  conserved hypothetical protein TIGR00250  45.81 
 
 
167 aa  89  3e-17  Sanguibacter keddieii DSM 10542  Bacteria  hitchhiker  0.00726332  normal  0.269027 
 
 
-
 
NC_010655  Amuc_1191  Holliday junction resolvase YqgF  43.18 
 
 
141 aa  88.6  3e-17  Akkermansia muciniphila ATCC BAA-835  Bacteria  hitchhiker  0.0000237997  normal 
 
 
-
 
NC_009767  Rcas_3713  Holliday junction resolvase YqgF  40 
 
 
146 aa  89  3e-17  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0658941  hitchhiker  0.00476179 
 
 
-
 
NC_008527  LACR_0138  Holliday junction resolvase-like protein  38.69 
 
 
143 aa  87.4  7e-17  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  n/a   
 
 
-
 
NC_008578  Acel_1329  Holliday junction resolvase YqgF  44.59 
 
 
173 aa  86.7  1e-16  Acidothermus cellulolyticus 11B  Bacteria  normal  0.0531797  normal  0.27422 
 
 
-
 
NC_013721  HMPREF0424_0376  RNAse YqgF  39.74 
 
 
152 aa  86.7  1e-16  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_014210  Ndas_3074  Holliday junction resolvase YqgF  46.41 
 
 
161 aa  85.1  4e-16  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.459764 
 
 
-
 
NC_011886  Achl_2014  Holliday junction resolvase YqgF  38.96 
 
 
207 aa  84  8e-16  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.00000000330035 
 
 
-
 
NC_013159  Svir_15280  conserved hypothetical protein TIGR00250  47.76 
 
 
154 aa  83.2  0.000000000000002  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.0307172  normal  0.652486 
 
 
-
 
NC_013235  Namu_3296  Holliday junction resolvase YqgF  42.38 
 
 
169 aa  80.9  0.000000000000006  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.000134676  normal  0.0641237 
 
 
-
 
NC_013093  Amir_5264  Holliday junction resolvase YqgF  50 
 
 
170 aa  79.3  0.00000000000002  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_2069  Holliday junction resolvase-like protein  47.74 
 
 
159 aa  78.6  0.00000000000003  Thermobifida fusca YX  Bacteria  normal  0.0705886  n/a   
 
 
-
 
NC_013205  Aaci_2024  Holliday junction resolvase YqgF  38.13 
 
 
144 aa  77.8  0.00000000000005  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.330713  n/a   
 
 
-
 
NC_007614  Nmul_A2479  Holliday junction resolvase-like protein  37.88 
 
 
151 aa  75.9  0.0000000000002  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_0094  Holliday junction resolvase YqgF  37.68 
 
 
142 aa  74.7  0.0000000000005  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.0018567  normal 
 
 
-
 
NC_008530  LGAS_0423  Holliday junction resolvase-like protein  35.92 
 
 
143 aa  74.7  0.0000000000005  Lactobacillus gasseri ATCC 33323  Bacteria  normal  normal 
 
 
-
 
NC_009012  Cthe_0153  Holliday junction resolvase-like protein  35.29 
 
 
141 aa  73.2  0.000000000001  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.0185653  n/a   
 
 
-
 
NC_003909  BCE_4469  Holliday junction resolvase-like protein  37.23 
 
 
137 aa  72  0.000000000003  Bacillus cereus ATCC 10987  Bacteria  decreased coverage  0.000000240455  n/a   
 
 
-
 
NC_005945  BAS4282  Holliday junction resolvase-like protein  37.23 
 
 
137 aa  72  0.000000000003  Bacillus anthracis str. Sterne  Bacteria  hitchhiker  0.000000036093  n/a   
 
 
-
 
NC_005957  BT9727_4119  Holliday junction resolvase-like protein  37.23 
 
 
137 aa  72  0.000000000003  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  decreased coverage  3.61572e-18  n/a   
 
 
-
 
NC_006274  BCZK4130  Holliday junction resolvase-like protein  37.23 
 
 
137 aa  72  0.000000000003  Bacillus cereus E33L  Bacteria  unclonable  0.000000000000238321  n/a   
 
 
-
 
NC_009674  Bcer98_3099  Holliday junction resolvase-like protein  37.23 
 
 
137 aa  72.4  0.000000000003  Bacillus cytotoxicus NVH 391-98  Bacteria  hitchhiker  0.00212776  n/a   
 
 
-
 
NC_009513  Lreu_0535  Holliday junction resolvase-like protein  33.11 
 
 
147 aa  72  0.000000000003  Lactobacillus reuteri DSM 20016  Bacteria  hitchhiker  0.00000331559  n/a   
 
 
-
 
NC_007530  GBAA_4614  Holliday junction resolvase-like protein  37.23 
 
 
137 aa  72  0.000000000003  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  decreased coverage  0.0000000000846091  n/a   
 
 
-
 
NC_011772  BCG9842_B0730  Holliday junction resolvase-like protein  37.23 
 
 
137 aa  72  0.000000000003  Bacillus cereus G9842  Bacteria  decreased coverage  0.0000000542239  normal 
 
 
-
 
NC_011773  BCAH820_4466  Holliday junction resolvase-like protein  37.23 
 
 
137 aa  72  0.000000000003  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.0000283196 
 
 
-
 
NC_010184  BcerKBAB4_4233  Holliday junction resolvase-like protein  37.23 
 
 
137 aa  71.6  0.000000000004  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.000272031  n/a   
 
 
-
 
NC_012793  GWCH70_2488  Holliday junction resolvase YqgF  36.5 
 
 
138 aa  71.6  0.000000000004  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.0000000680199  n/a   
 
 
-
 
NC_011658  BCAH187_A4519  Holliday junction resolvase-like protein  37.5 
 
 
137 aa  71.6  0.000000000004  Bacillus cereus AH187  Bacteria  hitchhiker  0.000203205  n/a   
 
 
-
 
NC_013440  Hoch_5401  Holliday junction resolvase YqgF  41.79 
 
 
139 aa  70.9  0.000000000006  Haliangium ochraceum DSM 14365  Bacteria  normal  0.616966  normal  0.68966 
 
 
-
 
NC_011725  BCB4264_A4506  Holliday junction resolvase-like protein  37.5 
 
 
137 aa  70.9  0.000000000007  Bacillus cereus B4264  Bacteria  normal  0.860088  n/a   
 
 
-
 
NC_008044  TM1040_0967  Holliday junction resolvase-like protein  35.56 
 
 
157 aa  70.9  0.000000000007  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_0556  Holliday junction resolvase YqgF  35.25 
 
 
153 aa  70.5  0.000000000008  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.901255  normal  0.0480752 
 
 
-
 
NC_007947  Mfla_2100  Holliday junction resolvase-like protein  33.58 
 
 
146 aa  70.1  0.00000000001  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_3023  Holliday junction resolvase-like protein  38.17 
 
 
160 aa  69.7  0.00000000001  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.438725  normal  0.394583 
 
 
-
 
NC_008346  Swol_0470  Holliday junction resolvase YqgF  35.07 
 
 
141 aa  70.1  0.00000000001  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  unclonable  0.00000000599692  n/a   
 
 
-
 
NC_008528  OEOE_1165  RNase H-like ribonuclease  33.58 
 
 
144 aa  70.1  0.00000000001  Oenococcus oeni PSU-1  Bacteria  normal  0.345189  n/a   
 
 
-
 
NC_008531  LEUM_0558  Holliday junction resolvase-like protein  35.25 
 
 
143 aa  69.7  0.00000000001  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_2739  Holliday junction resolvase YqgF  33.58 
 
 
137 aa  69.7  0.00000000002  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_010830  Aasi_1327  Holliday junction resolvase-like protein  30.71 
 
 
141 aa  69.3  0.00000000002  Candidatus Amoebophilus asiaticus 5a2  Bacteria  n/a    normal  0.513618 
 
 
-
 
NC_010730  SYO3AOP1_0474  Holliday junction resolvase YqgF  30.6 
 
 
145 aa  69.3  0.00000000002  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  hitchhiker  0.00800439  n/a   
 
 
-
 
NC_013223  Dret_1130  Holliday junction resolvase YqgF  33.08 
 
 
142 aa  68.6  0.00000000003  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_007519  Dde_0314  Holliday junction resolvase YqgF  35.11 
 
 
144 aa  68.9  0.00000000003  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_3633  Holliday junction resolvase YqgF  31.54 
 
 
158 aa  68.6  0.00000000003  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_1640  Holliday junction resolvase YqgF  38.69 
 
 
140 aa  68.9  0.00000000003  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.278901  normal  0.163549 
 
 
-
 
NC_013216  Dtox_2265  Holliday junction resolvase YqgF  35.29 
 
 
139 aa  68.9  0.00000000003  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  hitchhiker  0.0000233904 
 
 
-
 
NC_013525  Tter_0088  Holliday junction resolvase YqgF  35.42 
 
 
149 aa  67.8  0.00000000007  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008312  Tery_4379  Holliday junction resolvase-like protein  32.85 
 
 
149 aa  67.4  0.00000000008  Trichodesmium erythraeum IMS101  Bacteria  normal  0.556882  normal  0.251804 
 
 
-
 
NC_011004  Rpal_3523  Holliday junction resolvase-like protein  37.4 
 
 
160 aa  67  0.00000000009  Rhodopseudomonas palustris TIE-1  Bacteria  hitchhiker  0.00889049  n/a   
 
 
-
 
NC_002950  PG2202  Holliday junction resolvase-like protein  35.51 
 
 
138 aa  66.6  0.0000000001  Porphyromonas gingivalis W83  Bacteria  n/a    normal 
 
 
-
 
NC_008255  CHU_0692  Holliday junction resolvase-like protein  29.58 
 
 
152 aa  66.6  0.0000000001  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.458381 
 
 
-
 
NC_013739  Cwoe_3035  Holliday junction resolvase YqgF  42.73 
 
 
133 aa  67  0.0000000001  Conexibacter woesei DSM 14684  Bacteria  normal  0.0101605  normal  0.0662243 
 
 
-
 
NC_012803  Mlut_12710  putative Holliday junction resolvase  43.97 
 
 
189 aa  66.6  0.0000000001  Micrococcus luteus NCTC 2665  Bacteria  normal  0.84059  n/a   
 
 
-
 
NC_011883  Ddes_0031  Holliday junction resolvase YqgF  37.04 
 
 
140 aa  66.2  0.0000000002  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_1342  Holliday junction resolvase-like protein  40.46 
 
 
160 aa  66.2  0.0000000002  Rhodobacter sphaeroides ATCC 17029  Bacteria  decreased coverage  0.00888056  normal  0.184568 
 
 
-
 
NC_007493  RSP_2684  Holliday junction resolvase-like protein  40.46 
 
 
160 aa  66.2  0.0000000002  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.173322  n/a   
 
 
-
 
NC_010084  Bmul_2523  Holliday junction resolvase-like protein  38.24 
 
 
149 aa  66.2  0.0000000002  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.159244 
 
 
-
 
NC_013730  Slin_5430  Holliday junction resolvase YqgF  33.81 
 
 
142 aa  66.6  0.0000000002  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_2535  Holliday junction resolvase-like protein  41.98 
 
 
137 aa  66.6  0.0000000002  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.52249 
 
 
-
 
NC_009720  Xaut_3922  Holliday junction resolvase YqgF  36.23 
 
 
176 aa  65.5  0.0000000003  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_0510  Holliday junction resolvase-like protein  39.13 
 
 
158 aa  65.5  0.0000000003  Paracoccus denitrificans PD1222  Bacteria  normal  0.556579  normal 
 
 
-
 
NC_013171  Apre_0938  Holliday junction resolvase YqgF  29.5 
 
 
139 aa  65.1  0.0000000004  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_013204  Elen_2554  Holliday junction resolvase YqgF  35.25 
 
 
138 aa  64.7  0.0000000005  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_1064  Holliday junction resolvase-like protein  38.81 
 
 
163 aa  64.3  0.0000000006  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.282287  normal 
 
 
-
 
NC_008048  Sala_0925  Holliday junction resolvase YqgF  39.26 
 
 
152 aa  64.3  0.0000000008  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.233016  normal 
 
 
-
 
NC_002976  SERP1180  Holliday junction resolvase-like protein  31.39 
 
 
142 aa  63.9  0.0000000009  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_1491  Holliday junction resolvase-like protein  29.5 
 
 
139 aa  63.9  0.0000000009  Thermoanaerobacter sp. X514  Bacteria  unclonable  0.0000000000748947  n/a   
 
 
-
 
NC_007964  Nham_2279  Holliday junction resolvase-like protein  36.64 
 
 
168 aa  63.9  0.0000000009  Nitrobacter hamburgensis X14  Bacteria  normal  0.273152  n/a   
 
 
-
 
NC_007406  Nwi_2004  Holliday junction resolvase-like protein  35.88 
 
 
163 aa  63.2  0.000000001  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.166059  normal  0.662003 
 
 
-
 
NC_013411  GYMC61_0964  Holliday junction resolvase YqgF  36.03 
 
 
138 aa  63.5  0.000000001  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009485  BBta_4721  Holliday junction resolvase-like protein  36.64 
 
 
161 aa  63.5  0.000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
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