More than 300 homologs were found in PanDaTox collection
for query gene PP_3112 on replicon NC_002947
Organism: Pseudomonas putida KT2440



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002947  PP_3112  hypothetical protein  100 
 
 
142 aa  286  5.0000000000000004e-77  Pseudomonas putida KT2440  Bacteria  normal  0.472591  normal  0.561703 
 
 
-
 
NC_009512  Pput_2602  HAD family hydrolase  96.32 
 
 
227 aa  265  2e-70  Pseudomonas putida F1  Bacteria  normal  normal  0.852152 
 
 
-
 
NC_010322  PputGB1_2742  HAD family hydrolase  89.63 
 
 
218 aa  245  1e-64  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_2424  HAD family hydrolase  84.44 
 
 
221 aa  227  5e-59  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_4434  HAD-superfamily hydrolase, subfamily IA, variant 3  50.38 
 
 
217 aa  137  4.999999999999999e-32  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_007952  Bxe_B1761  HAD family hydrolase  50.75 
 
 
230 aa  136  7.999999999999999e-32  Burkholderia xenovorans LB400  Bacteria  normal  0.0120798  normal  0.0416472 
 
 
-
 
NC_004578  PSPTO_3590  HAD-superfamily hydrolase  50.77 
 
 
218 aa  128  3e-29  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.906124  n/a   
 
 
-
 
NC_010338  Caul_0320  HAD family hydrolase  51.18 
 
 
241 aa  122  2e-27  Caulobacter sp. K31  Bacteria  normal  0.288784  normal 
 
 
-
 
NC_007650  BTH_II0272  HAD-superfamily hydrolase  50 
 
 
221 aa  118  3e-26  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_4630  HAD family hydrolase  40.44 
 
 
225 aa  114  3.9999999999999997e-25  Anabaena variabilis ATCC 29413  Bacteria  normal  hitchhiker  0.00554039 
 
 
-
 
NC_014212  Mesil_0482  HAD-superfamily hydrolase, subfamily IA, variant 3  51.54 
 
 
213 aa  114  5e-25  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_009075  BURPS668_A2948  HAD-superfamily hydrolase  48.85 
 
 
221 aa  112  1.0000000000000001e-24  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_4442  HAD superfamily hydrolase  41.22 
 
 
228 aa  109  1.0000000000000001e-23  'Nostoc azollae' 0708  Bacteria  normal  0.536318  n/a   
 
 
-
 
NC_008312  Tery_2465  HAD family hydrolase  42.86 
 
 
220 aa  108  2.0000000000000002e-23  Trichodesmium erythraeum IMS101  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_3475  HAD-superfamily hydrolase, subfamily IA, variant 3  43.28 
 
 
221 aa  106  1e-22  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_0251  HAD-superfamily hydrolase subfamily IA, variant 3  44.62 
 
 
216 aa  104  3e-22  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.822561 
 
 
-
 
NC_009485  BBta_7216  putative haloacid dehalogenase-like hydrolase  43.85 
 
 
223 aa  101  3e-21  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_2101  HAD family hydrolase  50.38 
 
 
231 aa  101  4e-21  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_1676  HAD-like hydrolase  46.62 
 
 
219 aa  100  6e-21  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.653252  normal  0.340852 
 
 
-
 
NC_009355  OSTLU_40332  predicted protein  48.03 
 
 
247 aa  98.2  4e-20  Ostreococcus lucimarinus CCE9901  Eukaryota  normal  n/a   
 
 
-
 
NC_008312  Tery_0409  HAD family hydrolase  35.71 
 
 
228 aa  87.4  5e-17  Trichodesmium erythraeum IMS101  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_3373  HAD-superfamily hydrolase, subfamily IA, variant 3  39.84 
 
 
231 aa  87  8e-17  Cyanothece sp. PCC 7425  Bacteria  normal  0.154909  normal  0.78527 
 
 
-
 
NC_013730  Slin_0811  HAD-superfamily hydrolase, subfamily IA, variant 3  36.36 
 
 
225 aa  83.6  9e-16  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.332678 
 
 
-
 
NC_013037  Dfer_2943  HAD-superfamily hydrolase, subfamily IA, variant 3  33.33 
 
 
218 aa  82  0.000000000000002  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.86932  normal 
 
 
-
 
NC_013730  Slin_0267  HAD-superfamily hydrolase, subfamily IA, variant 3  37.04 
 
 
220 aa  78.2  0.00000000000004  Spirosoma linguale DSM 74  Bacteria  normal  0.583067  normal  0.103324 
 
 
-
 
NC_011989  Avi_1034  hydrolase  36.44 
 
 
217 aa  77  0.00000000000009  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_1356  HAD family hydrolase  29.77 
 
 
221 aa  75.1  0.0000000000003  Flavobacterium johnsoniae UW101  Bacteria  normal  0.14421  n/a   
 
 
-
 
NC_010803  Clim_0139  HAD-superfamily hydrolase, subfamily IA, variant 3  39.81 
 
 
220 aa  75.1  0.0000000000003  Chlorobium limicola DSM 245  Bacteria  hitchhiker  0.000437323  n/a   
 
 
-
 
NC_011071  Smal_0452  HAD-superfamily hydrolase, subfamily IA, variant 3  42.61 
 
 
227 aa  73.2  0.000000000001  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_2293  HAD-superfamily hydrolase, subfamily IA, variant 3  42.11 
 
 
218 aa  72.8  0.000000000001  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.0000494788  n/a   
 
 
-
 
NC_013421  Pecwa_0767  beta-phosphoglucomutase  33.85 
 
 
220 aa  72.4  0.000000000002  Pectobacterium wasabiae WPP163  Bacteria  normal  0.180027  n/a   
 
 
-
 
NC_013061  Phep_3134  HAD-superfamily hydrolase, subfamily IA, variant 3  31.71 
 
 
219 aa  72.4  0.000000000002  Pedobacter heparinus DSM 2366  Bacteria  normal  0.833655  normal 
 
 
-
 
NC_013517  Sterm_2267  HAD-superfamily hydrolase, subfamily IA, variant 3  34.31 
 
 
219 aa  72  0.000000000003  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_008639  Cpha266_2701  beta-phosphoglucomutase family hydrolase  35.43 
 
 
232 aa  71.2  0.000000000004  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_0853  HAD family hydrolase  36.89 
 
 
221 aa  71.6  0.000000000004  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.0114666 
 
 
-
 
NC_013946  Mrub_2205  HAD-superfamily hydrolase subfamily IA, variant 3  36.11 
 
 
228 aa  70.5  0.000000000007  Meiothermus ruber DSM 1279  Bacteria  normal  0.322675  normal 
 
 
-
 
NC_007512  Plut_2091  Beta-phosphoglucomutase hydrolase  34.43 
 
 
233 aa  70.5  0.000000000007  Chlorobium luteolum DSM 273  Bacteria  normal  normal 
 
 
-
 
NC_010803  Clim_2483  beta-phosphoglucomutase family hydrolase  30.71 
 
 
233 aa  70.5  0.000000000007  Chlorobium limicola DSM 245  Bacteria  normal  0.0678579  n/a   
 
 
-
 
NC_014212  Mesil_0179  HAD-superfamily hydrolase, subfamily IA, variant 3  34.56 
 
 
218 aa  69.7  0.00000000001  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_0810  HAD family hydrolase  37.6 
 
 
241 aa  70.1  0.00000000001  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.731901  normal  0.645331 
 
 
-
 
NC_013595  Sros_5916  HAD family hydrolase  37.4 
 
 
218 aa  69.3  0.00000000002  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0345843  normal  0.0351614 
 
 
-
 
NC_013235  Namu_2787  HAD-superfamily hydrolase, subfamily IA, variant 3  39.47 
 
 
230 aa  69.3  0.00000000002  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00137861  hitchhiker  0.0000132599 
 
 
-
 
NC_009012  Cthe_3073  HAD family hydrolase  31.2 
 
 
223 aa  69.3  0.00000000002  Clostridium thermocellum ATCC 27405  Bacteria  hitchhiker  0.00582956  n/a   
 
 
-
 
NC_004578  PSPTO_0836  hypothetical protein  31.85 
 
 
195 aa  68.6  0.00000000003  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_7385  HAD-superfamily hydrolase, subfamily IA  40.4 
 
 
248 aa  68.6  0.00000000003  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_008639  Cpha266_2591  HAD family hydrolase  38.68 
 
 
220 aa  68.6  0.00000000003  Chlorobium phaeobacteroides DSM 266  Bacteria  hitchhiker  0.0000123522  n/a   
 
 
-
 
NC_014148  Plim_3898  HAD-superfamily hydrolase, subfamily IA, variant 3  33.83 
 
 
233 aa  67.8  0.00000000004  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_004116  SAG0181  HAD superfamily hydrolase  26.19 
 
 
214 aa  67  0.00000000007  Streptococcus agalactiae 2603V/R  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_3992  HAD-superfamily hydrolase, subfamily IA, variant 3  32.41 
 
 
218 aa  67  0.00000000007  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.177922  normal  0.23268 
 
 
-
 
NC_009483  Gura_2233  HAD family hydrolase  34.62 
 
 
225 aa  67  0.00000000009  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2485  HAD-superfamily hydrolase, subfamily IA, variant 3  33.61 
 
 
238 aa  66.2  0.0000000001  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_007512  Plut_1231  HAD family hydrolase  39.42 
 
 
223 aa  66.6  0.0000000001  Chlorobium luteolum DSM 273  Bacteria  normal  normal  0.370393 
 
 
-
 
NC_012918  GM21_0783  HAD-superfamily hydrolase, subfamily IA, variant 1  35.64 
 
 
222 aa  66.6  0.0000000001  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_009654  Mmwyl1_0641  HAD family hydrolase  36 
 
 
220 aa  66.2  0.0000000001  Marinomonas sp. MWYL1  Bacteria  normal  0.950078  normal  0.0427696 
 
 
-
 
NC_009455  DehaBAV1_0374  HAD family hydrolase  30.77 
 
 
456 aa  65.5  0.0000000002  Dehalococcoides sp. BAV1  Bacteria  hitchhiker  0.0000852801  n/a   
 
 
-
 
NC_008789  Hhal_1452  HAD family hydrolase  36.29 
 
 
241 aa  65.9  0.0000000002  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_011059  Paes_2237  beta-phosphoglucomutase family hydrolase  32.84 
 
 
254 aa  66.2  0.0000000002  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.202357  normal 
 
 
-
 
NC_014165  Tbis_1853  HAD-superfamily hydrolase  36.54 
 
 
213 aa  65.5  0.0000000002  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_012034  Athe_0397  beta-phosphoglucomutase family hydrolase  30.51 
 
 
223 aa  66.2  0.0000000002  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_000391  2-deoxyglucose-6-phosphate hydrolase YniC  28.23 
 
 
218 aa  65.1  0.0000000003  Vibrio sp. Ex25  Bacteria  normal  0.0106831  n/a   
 
 
-
 
NC_007947  Mfla_1543  HAD family hydrolase  32.79 
 
 
218 aa  65.1  0.0000000003  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.290377 
 
 
-
 
NC_009012  Cthe_0780  HAD family hydrolase  31.13 
 
 
227 aa  64.7  0.0000000004  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_1743  HAD-superfamily hydrolase, subfamily IA, variant 3  36.46 
 
 
227 aa  64.7  0.0000000004  Geobacillus sp. WCH70  Bacteria  normal  0.293469  n/a   
 
 
-
 
NC_011725  BCB4264_A4313  hydrolase, haloacid dehalogenase-like family  31.43 
 
 
235 aa  63.9  0.0000000007  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_2690  HAD family hydrolase  31.63 
 
 
221 aa  63.9  0.0000000007  Flavobacterium johnsoniae UW101  Bacteria  normal  0.365385  n/a   
 
 
-
 
NC_002936  DET0395  glycoprotease family protein/hydrolase, beta-phosphoglucomutase family  28.21 
 
 
456 aa  63.9  0.0000000008  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1839  HAD superfamily hydrolase  32.14 
 
 
228 aa  63.5  0.0000000008  Geobacter sulfurreducens PCA  Bacteria  normal  0.605398  n/a   
 
 
-
 
NC_008345  Sfri_3772  2-deoxyglucose-6-phosphatase  34.29 
 
 
218 aa  63.5  0.0000000008  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_0649  HAD family hydrolase  37.11 
 
 
220 aa  63.5  0.0000000009  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_10160  HAD-superfamily hydrolase, subfamily IA, variant 3  31.36 
 
 
217 aa  63.5  0.0000000009  Halothermothrix orenii H 168  Bacteria  normal  0.64096  n/a   
 
 
-
 
NC_007333  Tfu_2488  HAD family hydrolase  32.58 
 
 
237 aa  63.5  0.000000001  Thermobifida fusca YX  Bacteria  normal  0.271509  n/a   
 
 
-
 
NC_007517  Gmet_0226  HAD family hydrolase  37.08 
 
 
218 aa  63.2  0.000000001  Geobacter metallireducens GS-15  Bacteria  normal  unclonable  4.68138e-23 
 
 
-
 
NC_008781  Pnap_2743  HAD family hydrolase  36.54 
 
 
227 aa  63.2  0.000000001  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.994994  normal  0.0511558 
 
 
-
 
NC_008009  Acid345_3787  HAD family hydrolase  37.37 
 
 
238 aa  63.2  0.000000001  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.85061  normal 
 
 
-
 
NC_008025  Dgeo_1893  HAD family hydrolase  38.21 
 
 
222 aa  63.2  0.000000001  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal  0.675301 
 
 
-
 
NC_010682  Rpic_0122  HAD-superfamily hydrolase, subfamily IA, variant 3  36.04 
 
 
229 aa  62.8  0.000000001  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
BN001308  ANIA_01216  Glycerol-3-phosphate phosphatasePutative uncharacterized protein ; [Source:UniProtKB/TrEMBL;Acc:Q9UVC6]  30.77 
 
 
236 aa  62.4  0.000000002  Aspergillus nidulans FGSC A4  Eukaryota  hitchhiker  0.00109898  normal  0.137881 
 
 
-
 
NC_013457  VEA_001299  CbbY family protein  36.27 
 
 
216 aa  62.4  0.000000002  Vibrio sp. Ex25  Bacteria  normal  0.916657  n/a   
 
 
-
 
NC_012856  Rpic12D_0130  HAD-superfamily hydrolase, subfamily IA, variant 3  36.04 
 
 
232 aa  62.4  0.000000002  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_005945  BAS4107  HAD superfamily hydrolase  31.43 
 
 
221 aa  62.4  0.000000002  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_4427  HAD superfamily hydrolase  31.43 
 
 
221 aa  62.4  0.000000002  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_2007  HAD family hydrolase  33.85 
 
 
222 aa  62.8  0.000000002  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_0935  HAD family hydrolase  30.51 
 
 
235 aa  62.4  0.000000002  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.941543  normal 
 
 
-
 
NC_014210  Ndas_3540  HAD-superfamily hydrolase, subfamily IA, variant 3  38.84 
 
 
209 aa  62.8  0.000000002  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.983537  normal  0.491386 
 
 
-
 
NC_011772  BCG9842_B0922  hydrolase, haloacid dehalogenase-like family  31.68 
 
 
235 aa  62.4  0.000000002  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_010831  Cphamn1_2486  beta-phosphoglucomutase family hydrolase  28.36 
 
 
232 aa  62  0.000000002  Chlorobium phaeobacteroides BS1  Bacteria  normal  0.24904  normal 
 
 
-
 
NC_013159  Svir_32070  haloacid dehalogenase superfamily enzyme, subfamily IA  32.58 
 
 
227 aa  62.4  0.000000002  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.466176  normal  0.444114 
 
 
-
 
NC_010320  Teth514_2198  beta-phosphoglucomutase  27.87 
 
 
215 aa  62.8  0.000000002  Thermoanaerobacter sp. X514  Bacteria  normal  0.102511  n/a   
 
 
-
 
NC_013552  DhcVS_338  hypothetical protein  28.21 
 
 
456 aa  62.4  0.000000002  Dehalococcoides sp. VS  Bacteria  hitchhiker  0.00693249  n/a   
 
 
-
 
NC_006348  BMA0336  HAD-superfamily hydrolase  38.68 
 
 
232 aa  62  0.000000003  Burkholderia mallei ATCC 23344  Bacteria  normal  0.438572  n/a   
 
 
-
 
NC_009091  P9301_10171  putative CbbY-like protein  28 
 
 
253 aa  61.6  0.000000003  Prochlorococcus marinus str. MIT 9301  Bacteria  normal  0.606492  n/a   
 
 
-
 
NC_010506  Swoo_0284  2-deoxyglucose-6-phosphatase  30.61 
 
 
221 aa  61.6  0.000000003  Shewanella woodyi ATCC 51908  Bacteria  normal  hitchhiker  0.00458991 
 
 
-
 
NC_010084  Bmul_0864  HAD family hydrolase  34.71 
 
 
226 aa  61.6  0.000000003  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_007514  Cag_0071  Beta-phosphoglucomutase hydrolase  32.46 
 
 
234 aa  62  0.000000003  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A3031  2-phosphoglycolate phosphatase  37.5 
 
 
256 aa  62  0.000000003  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A0634  HAD-superfamily hydrolase  38.68 
 
 
232 aa  62  0.000000003  Burkholderia mallei SAVP1  Bacteria  normal  0.535941  n/a   
 
 
-
 
NC_008836  BMA10229_A2468  HAD-superfamily hydrolase  38.68 
 
 
232 aa  62  0.000000003  Burkholderia mallei NCTC 10229  Bacteria  normal  0.273983  n/a   
 
 
-
 
NC_009076  BURPS1106A_0879  HAD family hydrolase  38.68 
 
 
232 aa  62  0.000000003  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1871  HAD-superfamily hydrolase, subfamily IA, variant 3  33.62 
 
 
227 aa  62  0.000000003  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_1738  HAD-superfamily hydrolase, subfamily IA, variant 3  37.31 
 
 
235 aa  62  0.000000003  Cyanothece sp. PCC 7425  Bacteria  normal  0.324615  normal  0.173582 
 
 
-
 
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