| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_2602 |
|---|
| Symbol | |
|---|
| ID | 5192702 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 2965315 |
|---|
| End bp | 2965998 |
|---|
| Gene Length | 684 bp |
|---|
| Protein Length | 227 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640587055 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_001267921 |
|---|
| Protein GI | 148547819 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0637] Predicted phosphatase/phosphohexomutase |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.852152 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGACCG CCCTGCTGTT CGACCTTGAC GGTACCCTCA CCGACACTGA CACCCTGCAC
CTGCAGGCCT TTCGCCAACT GCTGCGTGAA CACGACGGCC GCGAGCTGAG CCAGGCGCAG
TTCGACGCCC AGGTCAGCGG CCGCGCCAAC GGCGAGCTGT TCGCCGAGCT GTTCAGCGGC
GCCAGCGTCG AACAGTGCCA GGCGTTGGCC GACCGCAAGG AAGCGCTGTT TCGCGCGATG
TCGCCGTCGC TTGAGCCAAT GCCAGGCCTG TTGCGCCTGC TGGAGCATGC CCAGGCCCAG
GACATCGGCA TGTGCGTGGT GACCAACGCA CCGCGGCTGA ACGCCGAGCA CATGCTGAAC
GCCATGGGCC TGGGCCAGCA CTTTGAACAT GTGCTGGTGG CCGAAGAACT GGCACGGCCC
AAACCGGACC CGCTGCCCTA CCTCACCGGC CTGCAGCGCC TGGGTGCCGA GGCCGGGCAA
GCGCTGGCCT TCGAGGACTC ATTGCCGGGG ACGGCGGCAG CCAGTGGCGC GGGGATCTTT
ACCGTGGGCG TGGCCACGAC GCAGACTCCG GAGCGGTTGC TGGCGGCGGG CGCCAGGCTG
GTTGTCGACG ACTTCAATGA TGCGGCGTTG TGGGCGTTGA TCGAGCGTAT GGCTTCAGAC
AGGGGCTGTG TTCCCGAAGG CTAG
|
|---|
| Protein sequence | MLTALLFDLD GTLTDTDTLH LQAFRQLLRE HDGRELSQAQ FDAQVSGRAN GELFAELFSG
ASVEQCQALA DRKEALFRAM SPSLEPMPGL LRLLEHAQAQ DIGMCVVTNA PRLNAEHMLN
AMGLGQHFEH VLVAEELARP KPDPLPYLTG LQRLGAEAGQ ALAFEDSLPG TAAASGAGIF
TVGVATTQTP ERLLAAGARL VVDDFNDAAL WALIERMASD RGCVPEG
|
|---|
| |