More than 300 homologs were found in PanDaTox collection
for query gene Dfer_5551 on replicon NC_013037
Organism: Dyadobacter fermentans DSM 18053



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013037  Dfer_5551  transcriptional regulator, AraC family  100 
 
 
133 aa  277  4e-74  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.832185 
 
 
-
 
NC_013132  Cpin_5964  transcriptional regulator, AraC family  42.71 
 
 
134 aa  89  2e-17  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.194078  normal 
 
 
-
 
NC_013440  Hoch_2463  transcriptional regulator, AraC family  41.67 
 
 
162 aa  87  8e-17  Haliangium ochraceum DSM 14365  Bacteria  normal  0.400735  normal  0.926275 
 
 
-
 
NC_013171  Apre_1137  transcriptional regulator, AraC family  40.82 
 
 
287 aa  81.3  0.000000000000004  Anaerococcus prevotii DSM 20548  Bacteria  decreased coverage  0.000000101216  n/a   
 
 
-
 
NC_006274  BCZK3497  AraC family transcriptional regulator  36.04 
 
 
198 aa  80.1  0.000000000000009  Bacillus cereus E33L  Bacteria  normal  0.27794  n/a   
 
 
-
 
NC_003909  BCE_3772  Ada regulatory protein/6-O-methylguanine-DNA methyltransferase  36.04 
 
 
198 aa  78.6  0.00000000000002  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_0315  transcriptional regulator, AraC family  33.33 
 
 
168 aa  78.6  0.00000000000003  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_011772  BCG9842_B1459  Ada regulatory protein/6-O-methylguanine-DNA methyltransferase  37.5 
 
 
198 aa  78.6  0.00000000000003  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.0000164097 
 
 
-
 
NC_009972  Haur_1284  AraC family transcriptional regulator  37.76 
 
 
168 aa  78.6  0.00000000000003  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_3751  Ada regulatory protein/6-O-methylguanine-DNA methyltransferase  35.14 
 
 
198 aa  78.2  0.00000000000004  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.0000000000128468 
 
 
-
 
NC_013947  Snas_1399  transcriptional regulator, AraC family  31.36 
 
 
158 aa  77.8  0.00000000000005  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_3628  transcriptional regulator, AraC family  38.95 
 
 
156 aa  77.8  0.00000000000005  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A3840  Ada regulatory protein/6-O-methylguanine-DNA methyltransferase  35.9 
 
 
198 aa  77.4  0.00000000000006  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A3788  Ada regulatory protein/6-O-methylguanine-DNA methyltransferase  35.14 
 
 
198 aa  77.4  0.00000000000007  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_2058  transcriptional regulator, AraC family  36.19 
 
 
286 aa  76.6  0.0000000000001  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_1509  transcriptional regulator AraC family  35.35 
 
 
284 aa  76.6  0.0000000000001  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_1047  transcriptional regulator, AraC family  33.94 
 
 
273 aa  76.6  0.0000000000001  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.859066 
 
 
-
 
NC_005945  BAS3585  Ada regulatory protein/6-O-methylguanine-DNA methyltransferase  35.71 
 
 
198 aa  75.9  0.0000000000002  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_3485  AraC family transcriptional regulator  34.23 
 
 
198 aa  75.9  0.0000000000002  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.781082  n/a   
 
 
-
 
NC_007530  GBAA_3869  Ada regulatory protein/6-O-methylguanine-DNA methyltransferase  35.71 
 
 
198 aa  75.9  0.0000000000002  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_4744  transcriptional regulator, AraC family  38.3 
 
 
157 aa  75.1  0.0000000000003  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.235772  n/a   
 
 
-
 
NC_009921  Franean1_5952  AraC family transcriptional regulator  37.11 
 
 
142 aa  74.7  0.0000000000004  Frankia sp. EAN1pec  Bacteria  normal  normal  0.149338 
 
 
-
 
NC_014158  Tpau_2986  transcriptional regulator, AraC family  37.23 
 
 
148 aa  74.3  0.0000000000005  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_0731  AraC family transcriptional regulator  34.69 
 
 
285 aa  73.2  0.000000000001  Sinorhizobium medicae WSM419  Bacteria  normal  0.0743378  normal  0.147127 
 
 
-
 
NC_009654  Mmwyl1_4098  AraC family transcriptional regulator  34.74 
 
 
280 aa  71.2  0.000000000004  Marinomonas sp. MWYL1  Bacteria  normal  hitchhiker  0.00424275 
 
 
-
 
NC_009832  Spro_2540  AraC family transcriptional regulator  33.33 
 
 
275 aa  71.2  0.000000000004  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_2719  AraC family transcriptional regulator  37.89 
 
 
276 aa  70.9  0.000000000006  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.894112  n/a   
 
 
-
 
NC_010676  Bphyt_6041  transcriptional regulator, AraC family  36.96 
 
 
303 aa  69.7  0.00000000001  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.331066 
 
 
-
 
NC_011729  PCC7424_1148  transcriptional regulator, AraC family  37.89 
 
 
309 aa  69.3  0.00000000002  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_013517  Sterm_1757  transcriptional regulator, AraC family  38.04 
 
 
278 aa  69.3  0.00000000002  Sebaldella termitidis ATCC 33386  Bacteria  hitchhiker  0.000137432  n/a   
 
 
-
 
NC_014158  Tpau_2020  transcriptional regulator, AraC family  35.71 
 
 
143 aa  69.3  0.00000000002  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.206011  n/a   
 
 
-
 
NC_010184  BcerKBAB4_3508  AraC family transcriptional regulator  35.14 
 
 
196 aa  68.6  0.00000000003  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0210792  n/a   
 
 
-
 
NC_008148  Rxyl_2645  AraC family transcriptional regulator  34.38 
 
 
156 aa  68.6  0.00000000003  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_1627  transcriptional regulator, AraC family  39 
 
 
273 aa  68.2  0.00000000004  Anaerocellum thermophilum DSM 6725  Bacteria  decreased coverage  0.00000116038  n/a   
 
 
-
 
NC_014212  Mesil_1477  transcriptional regulator, AraC family  35.45 
 
 
278 aa  68.2  0.00000000004  Meiothermus silvanus DSM 9946  Bacteria  decreased coverage  0.000537918  unclonable  0.00000296813 
 
 
-
 
NC_013510  Tcur_0009  transcriptional regulator, AraC family  34.62 
 
 
139 aa  67.8  0.00000000004  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009456  VC0395_0236  AraC/XylS family transcriptional regulator  31.68 
 
 
277 aa  67.8  0.00000000004  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_1393  transcriptional regulator, AraC family  30.61 
 
 
277 aa  68.2  0.00000000004  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_2499  helix-turn-helix- domain containing protein AraC type  32.74 
 
 
156 aa  67.8  0.00000000005  Gordonia bronchialis DSM 43247  Bacteria  normal  0.401459  n/a   
 
 
-
 
NC_013595  Sros_7719  putative transcriptional regulator, AraC family, isolated domain protein  33.33 
 
 
134 aa  67.4  0.00000000007  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_1398  AraC family transcriptional regulator  30.85 
 
 
296 aa  67  0.00000000008  Caulobacter sp. K31  Bacteria  normal  0.584508  normal 
 
 
-
 
NC_010506  Swoo_2093  AraC family transcriptional regulator  36.75 
 
 
287 aa  67  0.00000000008  Shewanella woodyi ATCC 51908  Bacteria  normal  0.369123  normal 
 
 
-
 
NC_010322  PputGB1_1774  AraC family transcriptional regulator  32.43 
 
 
289 aa  67  0.00000000009  Pseudomonas putida GB-1  Bacteria  normal  0.524324  normal 
 
 
-
 
NC_013947  Snas_6338  transcriptional regulator, AraC family  37.78 
 
 
145 aa  67  0.00000000009  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_6995  AraC/XylS family transcriptional regulator  30.19 
 
 
255 aa  66.6  0.0000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  hitchhiker  0.00467693 
 
 
-
 
NC_009485  BBta_0774  AraC family transcriptional regulator  36.56 
 
 
278 aa  66.6  0.0000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  decreased coverage  0.000960474 
 
 
-
 
NC_012034  Athe_2139  transcriptional regulator, AraC family  35.29 
 
 
282 aa  66.2  0.0000000001  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.669919  n/a   
 
 
-
 
NC_008751  Dvul_0479  AraC family transcriptional regulator  28.87 
 
 
279 aa  66.6  0.0000000001  Desulfovibrio vulgaris DP4  Bacteria  normal  hitchhiker  0.00109362 
 
 
-
 
NC_008825  Mpe_A3646  AraC family transcriptional regulator  32.26 
 
 
275 aa  66.2  0.0000000001  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_007510  Bcep18194_A6508  bifunctional DNA-O6-methylguanine--protein-cysteine S-methyltransferase / transcriptional regulator Ada  31.53 
 
 
363 aa  66.2  0.0000000002  Burkholderia sp. 383  Bacteria  hitchhiker  0.000000013299  normal  0.0946299 
 
 
-
 
NC_013411  GYMC61_3305  two component transcriptional regulator, AraC family  31.25 
 
 
513 aa  66.2  0.0000000002  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008060  Bcen_2539  AraC family transcriptional regulator  31.53 
 
 
363 aa  65.9  0.0000000002  Burkholderia cenocepacia AU 1054  Bacteria  hitchhiker  0.0000057895  n/a   
 
 
-
 
NC_008254  Meso_0577  AraC family transcriptional regulator  33.33 
 
 
313 aa  65.5  0.0000000002  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_1022  transcriptional regulator, AraC family  35.85 
 
 
145 aa  65.9  0.0000000002  Meiothermus silvanus DSM 9946  Bacteria  normal  0.532062  normal  0.274495 
 
 
-
 
NC_008542  Bcen2424_3152  AraC family transcriptional regulator  31.53 
 
 
363 aa  65.9  0.0000000002  Burkholderia cenocepacia HI2424  Bacteria  hitchhiker  0.00000475647  n/a   
 
 
-
 
NC_009654  Mmwyl1_2300  AraC family transcriptional regulator  34.91 
 
 
274 aa  65.5  0.0000000002  Marinomonas sp. MWYL1  Bacteria  normal  0.457981  normal 
 
 
-
 
NC_008740  Maqu_3855  AraC family transcriptional regulator  30.1 
 
 
285 aa  65.9  0.0000000002  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_1562  AraC family transcriptional regulator  33 
 
 
278 aa  65.1  0.0000000003  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_2165  transcriptional regulator, AraC family  32.99 
 
 
318 aa  65.1  0.0000000003  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_007575  Suden_1946  AraC family transcriptional regulator  30.63 
 
 
282 aa  65.1  0.0000000003  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  0.609227  n/a   
 
 
-
 
NC_010501  PputW619_3129  AraC family transcriptional regulator  31.52 
 
 
299 aa  65.1  0.0000000003  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_010551  BamMC406_3089  AraC family transcriptional regulator  34.52 
 
 
363 aa  65.1  0.0000000003  Burkholderia ambifaria MC40-6  Bacteria  hitchhiker  0.000000381417  hitchhiker  0.0021619 
 
 
-
 
NC_010001  Cphy_0572  AraC family transcriptional regulator  34.74 
 
 
300 aa  65.1  0.0000000003  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_0091  AraC family transcriptional regulator  28.71 
 
 
278 aa  65.1  0.0000000003  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_008390  Bamb_3205  AraC family transcriptional regulator  34.52 
 
 
380 aa  65.1  0.0000000003  Burkholderia ambifaria AMMD  Bacteria  hitchhiker  0.000040374  n/a   
 
 
-
 
NC_010508  Bcenmc03_3171  AraC family transcriptional regulator  31.53 
 
 
363 aa  65.5  0.0000000003  Burkholderia cenocepacia MC0-3  Bacteria  hitchhiker  0.0000000719173  decreased coverage  0.000000135353 
 
 
-
 
NC_009436  Ent638_0382  AraC family transcriptional regulator  32.63 
 
 
274 aa  65.1  0.0000000003  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_3008  helix-turn-helix domain-containing protein  32.69 
 
 
149 aa  65.1  0.0000000003  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.501023  normal  0.487473 
 
 
-
 
NC_009997  Sbal195_1599  AraC family transcriptional regulator  33 
 
 
278 aa  65.1  0.0000000003  Shewanella baltica OS195  Bacteria  hitchhiker  0.000366861  normal  0.399443 
 
 
-
 
NC_009052  Sbal_1568  AraC family transcriptional regulator  33 
 
 
278 aa  65.1  0.0000000003  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_013162  Coch_0540  transcriptional regulator, AraC family  30.53 
 
 
289 aa  65.1  0.0000000003  Capnocytophaga ochracea DSM 7271  Bacteria  normal  0.516999  n/a   
 
 
-
 
NC_011312  VSAL_I1187  transcriptional regulator, AraC-family  34.74 
 
 
278 aa  65.1  0.0000000003  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_5781  AraC family transcriptional regulator  29.47 
 
 
267 aa  64.7  0.0000000004  Delftia acidovorans SPH-1  Bacteria  normal  hitchhiker  0.00273852 
 
 
-
 
NC_011663  Sbal223_2781  transcriptional regulator, AraC family  33 
 
 
271 aa  64.7  0.0000000004  Shewanella baltica OS223  Bacteria  normal  normal  0.109963 
 
 
-
 
NC_009511  Swit_0716  AraC family transcriptional regulator  34.38 
 
 
296 aa  64.7  0.0000000004  Sphingomonas wittichii RW1  Bacteria  normal  hitchhiker  0.00193737 
 
 
-
 
NC_013440  Hoch_1284  transcriptional regulator, AraC family  32.71 
 
 
150 aa  64.7  0.0000000004  Haliangium ochraceum DSM 14365  Bacteria  normal  hitchhiker  0.00113344 
 
 
-
 
NC_010001  Cphy_3697  two component AraC family transcriptional regulator  32.69 
 
 
517 aa  64.7  0.0000000004  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.0000611836  n/a   
 
 
-
 
NC_008146  Mmcs_1736  AraC family transcriptional regulator  32.99 
 
 
146 aa  64.7  0.0000000004  Mycobacterium sp. MCS  Bacteria  normal  0.228742  n/a   
 
 
-
 
NC_009441  Fjoh_2943  helix-turn-helix domain-containing protein  34.74 
 
 
307 aa  64.7  0.0000000004  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0314532  n/a   
 
 
-
 
NC_009439  Pmen_4394  AraC family transcriptional regulator  29.79 
 
 
266 aa  64.7  0.0000000004  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.140673 
 
 
-
 
NC_009438  Sputcn32_1460  AraC family transcriptional regulator  33 
 
 
278 aa  64.7  0.0000000004  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_1783  AraC family transcriptional regulator  32.99 
 
 
146 aa  64.7  0.0000000004  Mycobacterium sp. KMS  Bacteria  normal  0.244044  normal 
 
 
-
 
NC_010320  Teth514_1958  response regulator receiver protein  38.71 
 
 
530 aa  64.7  0.0000000004  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.000471781  n/a   
 
 
-
 
NC_009077  Mjls_1715  AraC family transcriptional regulator  32.99 
 
 
146 aa  64.7  0.0000000004  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_2157  two component AraC family transcriptional regulator  32.26 
 
 
250 aa  64.3  0.0000000005  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.0322408 
 
 
-
 
NC_012912  Dd1591_1357  transcriptional regulator, AraC family  34.02 
 
 
277 aa  64.3  0.0000000005  Dickeya zeae Ech1591  Bacteria  normal  0.193095  n/a   
 
 
-
 
NC_014151  Cfla_2425  transcriptional regulator, AraC family  33.33 
 
 
147 aa  64.3  0.0000000005  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0298532  hitchhiker  0.00178687 
 
 
-
 
NC_007973  Rmet_2453  AraC family transcriptional regulator  29.79 
 
 
279 aa  64.3  0.0000000006  Cupriavidus metallidurans CH34  Bacteria  unclonable  0.00000000000537916  normal  0.591211 
 
 
-
 
NC_013730  Slin_2332  transcriptional regulator, AraC family  35.05 
 
 
311 aa  63.9  0.0000000007  Spirosoma linguale DSM 74  Bacteria  hitchhiker  0.00000141159  normal  0.457995 
 
 
-
 
NC_010681  Bphyt_1111  transcriptional regulator, AraC family  31.91 
 
 
312 aa  63.9  0.0000000007  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_3482  AraC family transcriptional regulator  33.33 
 
 
299 aa  63.5  0.0000000008  Jannaschia sp. CCS1  Bacteria  normal  0.675068  normal  0.589184 
 
 
-
 
NC_010676  Bphyt_6120  transcriptional regulator, AraC family  34.44 
 
 
284 aa  63.9  0.0000000008  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_3902  AraC family transcriptional regulator  34.41 
 
 
154 aa  63.9  0.0000000008  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_2173  AraC family transcriptional regulator  28.83 
 
 
289 aa  63.2  0.000000001  Pseudomonas putida KT2440  Bacteria  normal  0.671765  normal 
 
 
-
 
NC_004347  SO_1762  AraC/XylS family transcriptional regulator  31.48 
 
 
278 aa  63.2  0.000000001  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_010084  Bmul_3145  AraC family transcriptional regulator  33.33 
 
 
365 aa  63.2  0.000000001  Burkholderia multivorans ATCC 17616  Bacteria  hitchhiker  0.0000000198948  unclonable  0.00000000000612342 
 
 
-
 
NC_011769  DvMF_1614  transcriptional regulator, AraC family  35.11 
 
 
366 aa  63.2  0.000000001  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_011655  BCAH187_C0213  transcriptional regulator, AraC family protein  31.71 
 
 
287 aa  63.2  0.000000001  Bacillus cereus AH187  Bacteria  normal  hitchhiker  0.00887507 
 
 
-
 
NC_011886  Achl_0110  transcriptional regulator, AraC family  33.33 
 
 
148 aa  63.5  0.000000001  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_008699  Noca_2677  AraC family transcriptional regulator  31.48 
 
 
147 aa  63.5  0.000000001  Nocardioides sp. JS614  Bacteria  normal  0.968923  n/a   
 
 
-
 
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