Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_1509 |
Symbol | |
ID | 7386472 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 1265738 |
End bp | 1266592 |
Gene Length | 855 bp |
Protein Length | 284 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 643650880 |
Product | transcriptional regulator AraC family |
Protein accession | YP_002549085 |
Protein GI | 222148128 |
COG category | [K] Transcription |
COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCACATGC TTTCATCTCG TCCTGCTATT TCATCTCAAC CTCTCATTCG TGAGCAGACC CGCTTCTGGC GAGATGCTCG GTTTGGCGGC ATGAAATGTA TGAGTGCGAC CTTTATCACC CATCGGTTTT CCCCGCATGC CCATGAGCAT TTTGGCATCG GTGCCATGGA GACGGGGCAG AAAATCGCCA CGATCAGGGG ATGCAGACAA GTCTGCGGAC CGGGCGATCT ATACCTGATC AATCCGGAGG AGATCCACGA TGGCAGTCCT GCGGGTGGGG TCTATCGATA TCGGATGATC TATCCGTCGG TCGCCATGGT GTGCGACGTT CTGCAAGAGA CCAGCAAGAG ACCGTCGTGG GAAACGCCGT CCTTTCGCCA GCAGATCGTC ACGGATCCGG CCTTGGCGCA GGCCTTTAAC CGGATGCACA GGCAAATAGA GCAGGCAGAT GGAATGCTCG GTGCCGAAGA GGGGATGCTG GACATGCTCA CCGCTCTTTT CACCCGCCAT GGCGCTGTTG CGCCTGCCTC CTCTGCCGCT CGCCCCGACA CGGCGATGGC GAGGGTGCGA GACTATCTCC ATGCGAATTT TGCTGAGGAT ATCGGCCTTG ACCATCTGGC GGGGCTGGTC GGATTCAGCC GTGCGCATTT GATCCGCAGC TTTCGCGCCA CCTATCATAT TACGCCCCAC GCCTATCTGA CACTTCGGCG TATTCGAGAA GCGGAGTCCA TGCTGGCCAA GGACGCTGCG CCTGCCGACG TCGCCTTTGC CTGCGGCTTT GCCGATCAGG CGCATTTTAC CCGCAATTTC AAGGCGCGGA TGGGCATGAC CCCGGCGCAA TTTCGCCGGG GATAG
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Protein sequence | MHMLSSRPAI SSQPLIREQT RFWRDARFGG MKCMSATFIT HRFSPHAHEH FGIGAMETGQ KIATIRGCRQ VCGPGDLYLI NPEEIHDGSP AGGVYRYRMI YPSVAMVCDV LQETSKRPSW ETPSFRQQIV TDPALAQAFN RMHRQIEQAD GMLGAEEGML DMLTALFTRH GAVAPASSAA RPDTAMARVR DYLHANFAED IGLDHLAGLV GFSRAHLIRS FRATYHITPH AYLTLRRIRE AESMLAKDAA PADVAFACGF ADQAHFTRNF KARMGMTPAQ FRRG
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