| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1774 |
|---|
| Symbol | |
|---|
| ID | 5869554 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 1992349 |
|---|
| End bp | 1993218 |
|---|
| Gene Length | 870 bp |
|---|
| Protein Length | 289 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 641546891 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | YP_001668013 |
|---|
| Protein GI | 167032782 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG3449] DNA gyrase inhibitor
[COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 0.524324 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 45 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGACTGACT CACAGCACAA CCCTACCTAC GCAAAGCGGT TCGAAGCCGT GCTTGCCTAC
ATCGACAGCC ACCTTGAAGG CGACCTGTCG GTGAATGCCC TGAGCCGCAT CGCCAACTTC
TCGGCGTTTC ACTTCCATCG GCAGTTCACG GCATACATGG GCATTCCGGT TTCGCGGTAT
GTGCAACTGA TGAGGCTTCG ACGCGCGGCG CACCAGCTGG TCGCCTCACC CGCAATGCCC
GTCCTGGAAG CCGCATTCGG CGCCGGTTTC GAAAGCCCCG AAGCCTTTTC CAGAGCGTTC
AAGCGTGCCT TTGGCATGGC GCCCAGCGTG TTCGCCAAGG CGCCGAACTG GCAGGCCTGG
AGTGCGGTAT TCGTTGTTCC ACACCTTTCC AGGAGTATCA CCATGCAGAT CCGTATCGTG
GATTTCGCCG AAACCCGCGT AGCCGCGCTC GAGCACCGAG GGCCACCCGG CCTGGTCGGC
GAAAGCGTCG CGCGTTTTCG CCAATGGCGC ATGCACAGCG GCCAGTCGCC GGTGGCCAGC
AGCCGCACGT TCGGCATTCC CTACGACAAC CCCGACACCA CCCCGCCCGA CGCTTTTCGC
TTTGCCGTTT GCGGTGAGAT TGATGAGGCT GTGCAGCCCA ACGATTTCGC CGTGCATGAG
CGGGTCATCC CGGCCGGGCG TTGCGCCGTG ATCCGGCATA TCGGCTCGCC TGACTACATC
GGCGAAACCA TCTACCCGCT TTATCGTGAC TGGCTGCCAT CGAGCAATGA AGAATTGCGC
GACCATCCGT TGTTCTTCCA GTACCTGAGC GTGTACCCGG AAACGCCGCT GGAGCAGTGG
CAAACGGATA TCTACGTGCC GCTGAAGTAA
|
|---|
| Protein sequence | MTDSQHNPTY AKRFEAVLAY IDSHLEGDLS VNALSRIANF SAFHFHRQFT AYMGIPVSRY
VQLMRLRRAA HQLVASPAMP VLEAAFGAGF ESPEAFSRAF KRAFGMAPSV FAKAPNWQAW
SAVFVVPHLS RSITMQIRIV DFAETRVAAL EHRGPPGLVG ESVARFRQWR MHSGQSPVAS
SRTFGIPYDN PDTTPPDAFR FAVCGEIDEA VQPNDFAVHE RVIPAGRCAV IRHIGSPDYI
GETIYPLYRD WLPSSNEELR DHPLFFQYLS VYPETPLEQW QTDIYVPLK
|
|---|
| |