| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_2173 |
|---|
| Symbol | |
|---|
| ID | 1045033 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 2479189 |
|---|
| End bp | 2480058 |
|---|
| Gene Length | 870 bp |
|---|
| Protein Length | 289 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637145587 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | NP_744322 |
|---|
| Protein GI | 26988897 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins
[COG3449] DNA gyrase inhibitor |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.671765 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGACTGACT CACAGCACAA CCCTAGCTAC ATGAAACGGT TCGAAACCGT GCTTGCCTAC
ATCGACAGCC ACCTCGAAGG TGACCTGTCG GTGAATGCCT TGAGCCGCAT CGCCAACTTC
TCGGCATTTC ACTTCCATCG GCAGTTCACG GCCTACATGG GCGTTCCGGT TTCACGGTAT
GTGCAACTGA TGAGGCTTCG ACGCGCAGCG CATCAACTGG TCGCCTCGCC CGCGATGCCC
ATACTGGAGG CCGCATTCGG CGCCGGTTTC GAAAGCCCCG AAGCCTTTGC CAGAGCGTTC
AAGCGCGCCT TCGGCATGGC GCCGAGCGTG TTCGCCAAGG CGCCGAACTG GCAGGCCTGG
AGTGCGGTAT TCAATGTTCC TCAGCGATCC AGGAGTATCA CCATGCAGAT CCGTATCGTG
AATTTCGCCG AAACCCACGT GGCCGCGCTC GAACACCAAG GGCCGCCCGG CCTGGTCAGC
GAAAGCGTCG CGCGTTTTCG CCAATGGCGC ATGCACAGCG GCCAGTCGCC TGTGGCCAGC
AGCCGTACCT TCGGTATCCC CTACGACAAC CCCGACACCA CCCCGGCCCA CGCCTTTCGC
TTTGCCGTGT GCGGCGAGAT AGACGAGGCA GTGCAGCCCA ACGATTTCGG CGTGCATGAA
CGGGTTATAC CGGCGGGGCG CTGTGCCGTG ATTCGACATA CCGGCTCGCC TGACTACATT
GGCGAAACTA TCTACCCGCT CTATCGTGAC TGGCTGCCAT CGAGCAACGA AGAACTGCGT
GATCATCCGT TGTTCTTTCA TTACCTGAGC GTCTATCCGG AAACACCACT GGAGCAATGG
CAAACGGACA TCTACGTGCC GCTGAAGTAG
|
|---|
| Protein sequence | MTDSQHNPSY MKRFETVLAY IDSHLEGDLS VNALSRIANF SAFHFHRQFT AYMGVPVSRY
VQLMRLRRAA HQLVASPAMP ILEAAFGAGF ESPEAFARAF KRAFGMAPSV FAKAPNWQAW
SAVFNVPQRS RSITMQIRIV NFAETHVAAL EHQGPPGLVS ESVARFRQWR MHSGQSPVAS
SRTFGIPYDN PDTTPAHAFR FAVCGEIDEA VQPNDFGVHE RVIPAGRCAV IRHTGSPDYI
GETIYPLYRD WLPSSNEELR DHPLFFHYLS VYPETPLEQW QTDIYVPLK
|
|---|
| |