| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4394 |
|---|
| Symbol | |
|---|
| ID | 5107247 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 4816768 |
|---|
| End bp | 4817568 |
|---|
| Gene Length | 801 bp |
|---|
| Protein Length | 266 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640505660 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | YP_001189873 |
|---|
| Protein GI | 146309408 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 49 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 0.140673 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATGCCA ACCGCCTGCT GGCCAAACCC TGGCTGCCGG GAGTCGAGCT GTTCCATGCC
GACTTCTCCG GGCAGGCGTT CGGCCGCCAC AGCCACGATG CCTTCGCTAT CGGCGCCATC
GTGCAGGGTG TCGGGGGTTA TCAGTGCCGT GGTCAGCGCT ATGCGCTGCC TGCCGGCACC
CTGTCGCTGA TGAACCCCGA GGAGCCGCAT ACCGGGCATG CCGAGTCGCC GCGCGTGGTG
TATCGCATGC TCTATGTCGA GGAGTCGCGG CTGCCGGCGC TGCTCGGGCG CAAGCGCCTG
CCCAATGGCT TCAGCACGCT CAACCCGCAT GACGACGGCC ACGTCGCGGC AGGCCTGGCG
CGGCTGGCCG GCGAGTTCGA GCGGGGCGAT GCGCTGGCGC TGGAGAGCGA ACTACTGGCC
CTGTTGGAGC TGGTATTCGT CCGCCACGGC GGCTTGCGCG AGGCGCGCCC GGCATTTCGC
GACAGCGGGG TGACGGCGTA CCTGCGCGAT TACCTGGAAG CGCATTACGC CGAGGCCGTC
AGTCTGGAGC AGCTGGCCGC ACTGGTGCAG CGTCACCCAC GCCACCTGAT CGAAGCCTTC
CGCCGTGCCT ATGGCGTGCC GCCGCATACC TACCTGCTGC AGCGCCGGGT GCGTGAGGCC
AAGCGCAGGT TGCTGCAGGG CCAGGCGCTG GCCGATGTCG CGCTGGACCT GGGGTTCTAT
GACCAGGCGC ATTTCAACGG CGTTTTTCGC CGCTTCACCG GGGTCACTCC AGGCCGTTTT
CGCGTGCTGG CGCAAGCCTG A
|
|---|
| Protein sequence | MDANRLLAKP WLPGVELFHA DFSGQAFGRH SHDAFAIGAI VQGVGGYQCR GQRYALPAGT
LSLMNPEEPH TGHAESPRVV YRMLYVEESR LPALLGRKRL PNGFSTLNPH DDGHVAAGLA
RLAGEFERGD ALALESELLA LLELVFVRHG GLREARPAFR DSGVTAYLRD YLEAHYAEAV
SLEQLAALVQ RHPRHLIEAF RRAYGVPPHT YLLQRRVREA KRRLLQGQAL ADVALDLGFY
DQAHFNGVFR RFTGVTPGRF RVLAQA
|
|---|
| |