More than 300 homologs were found in PanDaTox collection
for query gene Dfer_1111 on replicon NC_013037
Organism: Dyadobacter fermentans DSM 18053



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013037  Dfer_1111  response regulator receiver protein  100 
 
 
123 aa  253  7e-67  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.0272953  normal  0.304596 
 
 
-
 
NC_013730  Slin_5022  response regulator receiver protein  66.12 
 
 
126 aa  162  2.0000000000000002e-39  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_4603  response regulator receiver protein  61.82 
 
 
132 aa  138  3e-32  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_0185  response regulator receiver protein  53.45 
 
 
132 aa  122  2e-27  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_5658  response regulator receiver protein  51.67 
 
 
132 aa  120  5e-27  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.483341  normal 
 
 
-
 
NC_010511  M446_2799  response regulator receiver protein  50 
 
 
132 aa  119  9.999999999999999e-27  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_5294  response regulator receiver protein  46.22 
 
 
130 aa  113  7.999999999999999e-25  Methylobacterium sp. 4-46  Bacteria  normal  0.0717946  normal  0.338735 
 
 
-
 
NC_013730  Slin_5021  adenylate/guanylate cyclase  52.14 
 
 
348 aa  111  3e-24  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_1110  adenylate/guanylate cyclase  51.72 
 
 
348 aa  110  9e-24  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.0224811  normal  0.236606 
 
 
-
 
NC_010505  Mrad2831_5657  adenylate/guanylate cyclase  49.14 
 
 
421 aa  107  5e-23  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.517681  normal 
 
 
-
 
NC_010511  M446_2796  adenylate/guanylate cyclase  46.55 
 
 
447 aa  103  7e-22  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_5293  adenylate/guanylate cyclase  45.69 
 
 
421 aa  98.2  4e-20  Methylobacterium sp. 4-46  Bacteria  normal  0.0545376  normal  0.227088 
 
 
-
 
NC_013440  Hoch_4621  adenylate/guanylate cyclase  43.59 
 
 
687 aa  95.1  3e-19  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.828122 
 
 
-
 
NC_013730  Slin_1905  response regulator receiver sensor hybrid histidine kinase  41.03 
 
 
668 aa  89.4  1e-17  Spirosoma linguale DSM 74  Bacteria  normal  0.0295515  normal  0.210974 
 
 
-
 
NC_008312  Tery_0615  response regulator receiver sensor signal transduction histidine kinase  42.24 
 
 
395 aa  89  2e-17  Trichodesmium erythraeum IMS101  Bacteria  normal  hitchhiker  0.00858549 
 
 
-
 
NC_013730  Slin_6047  response regulator receiver sensor hybrid histidine kinase  43.97 
 
 
677 aa  88.2  4e-17  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU1117  response regulator  42.86 
 
 
127 aa  85.9  2e-16  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_4604  histidine kinase  41.38 
 
 
663 aa  85.9  2e-16  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_0407  response regulator receiver protein  39.17 
 
 
128 aa  85.9  2e-16  Desulfovibrio vulgaris DP4  Bacteria  normal  0.627834  normal  0.12665 
 
 
-
 
NC_010814  Glov_3603  response regulator receiver protein  36.75 
 
 
131 aa  84.7  4e-16  Geobacter lovleyi SZ  Bacteria  normal  0.656399  n/a   
 
 
-
 
NC_008609  Ppro_0435  response regulator receiver protein  39.66 
 
 
124 aa  84.7  4e-16  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.00876892  n/a   
 
 
-
 
NC_007517  Gmet_2679  response regulator receiver domain-containing protein  40.34 
 
 
129 aa  82.8  0.000000000000001  Geobacter metallireducens GS-15  Bacteria  normal  0.380915  normal  0.27601 
 
 
-
 
NC_011146  Gbem_1660  response regulator receiver protein  41.18 
 
 
126 aa  82.4  0.000000000000002  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2553  response regulator receiver protein  41.18 
 
 
126 aa  82.4  0.000000000000002  Geobacter sp. M21  Bacteria  n/a    hitchhiker  2.1194499999999997e-20 
 
 
-
 
NC_011769  DvMF_1769  response regulator receiver protein  40.5 
 
 
129 aa  82  0.000000000000003  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_008751  Dvul_0173  response regulator receiver protein  39.17 
 
 
121 aa  81.3  0.000000000000004  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_2934  response regulator receiver protein  40.34 
 
 
129 aa  79.7  0.00000000000001  Geobacter uraniireducens Rf4  Bacteria  unclonable  0.0000000000852899  n/a   
 
 
-
 
NC_013173  Dbac_0628  two component, sigma54 specific, transcriptional regulator, Fis family  39.47 
 
 
446 aa  80.1  0.00000000000001  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_0648  response regulator receiver protein  36.13 
 
 
151 aa  79  0.00000000000002  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_1951  two component, sigma54 specific, Fis family transcriptional regulator  37.07 
 
 
470 aa  78.2  0.00000000000004  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.516267  normal 
 
 
-
 
NC_013501  Rmar_0987  two component transcriptional regulator, winged helix family  31.09 
 
 
233 aa  77.8  0.00000000000005  Rhodothermus marinus DSM 4252  Bacteria  normal  0.195539  n/a   
 
 
-
 
NC_007498  Pcar_2017  response regulator CheY  37.93 
 
 
129 aa  77.4  0.00000000000007  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_1908  two component, sigma54 specific, Fis family transcriptional regulator  36.21 
 
 
473 aa  77  0.00000000000008  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_2281  response regulator receiver protein  33.88 
 
 
128 aa  76.3  0.0000000000001  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.498531 
 
 
-
 
NC_011891  A2cp1_4151  two component transcriptional regulator, winged helix family  34.75 
 
 
230 aa  76.3  0.0000000000001  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_2056  two component, sigma54 specific, transcriptional regulator, Fis family  36.21 
 
 
473 aa  76.6  0.0000000000001  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.732718  n/a   
 
 
-
 
NC_007519  Dde_0321  response regulator receiver domain-containing protein  34.17 
 
 
122 aa  76.6  0.0000000000001  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_4009  two component transcriptional regulator  34.75 
 
 
230 aa  76.3  0.0000000000001  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  decreased coverage  0.00751412  n/a   
 
 
-
 
NC_011145  AnaeK_1971  two component, sigma54 specific, transcriptional regulator, Fis family  36.21 
 
 
473 aa  76.6  0.0000000000001  Anaeromyxobacter sp. K  Bacteria  normal  0.0887215  n/a   
 
 
-
 
NC_008554  Sfum_0656  response regulator receiver protein  34.17 
 
 
129 aa  76.6  0.0000000000001  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.663964  normal 
 
 
-
 
NC_011145  AnaeK_4125  two component transcriptional regulator, winged helix family  34.75 
 
 
230 aa  76.3  0.0000000000001  Anaeromyxobacter sp. K  Bacteria  normal  0.125271  n/a   
 
 
-
 
NC_011769  DvMF_2550  multi-sensor signal transduction histidine kinase  38.14 
 
 
685 aa  75.5  0.0000000000002  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_007498  Pcar_0653  two-component response regulator PhoB  37.04 
 
 
230 aa  75.9  0.0000000000002  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.131558  n/a   
 
 
-
 
NC_009674  Bcer98_3794  two component transcriptional regulator  42.24 
 
 
223 aa  75.5  0.0000000000002  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.0280755  n/a   
 
 
-
 
NC_013501  Rmar_0797  two component, sigma54 specific, transcriptional regulator, Fis family  35.59 
 
 
472 aa  75.5  0.0000000000002  Rhodothermus marinus DSM 4252  Bacteria  normal  0.241811  n/a   
 
 
-
 
NC_008554  Sfum_0618  response regulator receiver protein  36.97 
 
 
157 aa  75.5  0.0000000000002  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_009943  Dole_1361  response regulator receiver protein  41.18 
 
 
147 aa  75.9  0.0000000000002  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B2033  DNA-binding response regulator  30.08 
 
 
224 aa  75.5  0.0000000000003  Bacillus cereus G9842  Bacteria  normal  0.725953  normal 
 
 
-
 
NC_007519  Dde_0328  response regulator receiver domain-containing protein  35.83 
 
 
406 aa  75.1  0.0000000000003  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.918345  n/a   
 
 
-
 
NC_007519  Dde_3715  multi-sensor signal transduction histidine kinase  39.64 
 
 
653 aa  75.5  0.0000000000003  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_60260  two-component response regulator PilR  38.46 
 
 
445 aa  75.1  0.0000000000003  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.000000831057 
 
 
-
 
NC_013173  Dbac_2855  response regulator receiver sensor signal transduction histidine kinase  35.83 
 
 
348 aa  75.5  0.0000000000003  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A3221  DNA-binding response regulator  30.08 
 
 
224 aa  75.5  0.0000000000003  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_5187  two-component response regulator PilR  38.46 
 
 
445 aa  75.1  0.0000000000003  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_1807  response regulator receiver protein  36.13 
 
 
139 aa  74.7  0.0000000000004  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2272  response regulator receiver sensor signal transduction histidine kinase  38.79 
 
 
382 aa  74.7  0.0000000000004  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.275022  n/a   
 
 
-
 
NC_011883  Ddes_0769  two component, sigma54 specific, transcriptional regulator, Fis family  38.84 
 
 
453 aa  74.3  0.0000000000004  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.165448  n/a   
 
 
-
 
NC_011769  DvMF_1991  response regulator receiver protein  37.39 
 
 
153 aa  74.7  0.0000000000004  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_009767  Rcas_0993  response regulator receiver protein  35.04 
 
 
127 aa  74.3  0.0000000000005  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.250481  normal 
 
 
-
 
NC_011773  BCAH820_3235  DNA-binding response regulator  29.27 
 
 
224 aa  74.3  0.0000000000005  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_011894  Mnod_2330  two component, sigma54 specific, transcriptional regulator, Fis family  42.86 
 
 
466 aa  74.3  0.0000000000005  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_2944  two component transcriptional regulator  30.08 
 
 
224 aa  73.9  0.0000000000006  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0958095  n/a   
 
 
-
 
NC_007404  Tbd_0904  two component Fis family transcriptional regulator  38.33 
 
 
454 aa  74.3  0.0000000000006  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.629928  normal 
 
 
-
 
NC_013526  Tter_2192  response regulator receiver modulated diguanylate cyclase  36.07 
 
 
303 aa  73.9  0.0000000000006  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_010581  Bind_2998  two component, sigma54 specific, Fis family transcriptional regulator  38.98 
 
 
460 aa  73.9  0.0000000000006  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.605804 
 
 
-
 
NC_010718  Nther_0252  response regulator receiver protein  32.76 
 
 
239 aa  73.9  0.0000000000007  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal  0.114255 
 
 
-
 
NC_010814  Glov_3076  two component, sigma54 specific, transcriptional regulator, Fis family  35.09 
 
 
454 aa  73.9  0.0000000000007  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_1999  two component, sigma54 specific, Fis family transcriptional regulator  39.45 
 
 
481 aa  73.9  0.0000000000008  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_011059  Paes_1429  response regulator receiver protein  31.09 
 
 
122 aa  73.6  0.0000000000009  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal  0.275463 
 
 
-
 
NC_009483  Gura_2678  two component, sigma-54 specific, Fis family transcriptional regulator  37.07 
 
 
457 aa  73.6  0.0000000000009  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2271  response regulator receiver protein  33.61 
 
 
127 aa  73.6  0.0000000000009  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.420434  n/a   
 
 
-
 
NC_009943  Dole_1341  response regulator receiver protein  38.33 
 
 
301 aa  73.2  0.000000000001  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_0513  two component transcriptional regulator, winged helix family  33.05 
 
 
228 aa  73.2  0.000000000001  Rhodothermus marinus DSM 4252  Bacteria  normal  0.985837  n/a   
 
 
-
 
NC_004578  PSPTO_0823  type 4 fimbriae expression regulatory protein pilR  36.75 
 
 
446 aa  73.2  0.000000000001  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_0684  two component, sigma54 specific, transcriptional regulator, Fis family  36.89 
 
 
469 aa  73.2  0.000000000001  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.0000000000150794 
 
 
-
 
NC_011830  Dhaf_4779  two component, sigma54 specific, transcriptional regulator, Fis family  35.34 
 
 
494 aa  73.2  0.000000000001  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_007796  Mhun_1438  putative PAS/PAC sensor protein  33.61 
 
 
393 aa  73.2  0.000000000001  Methanospirillum hungatei JF-1  Archaea  normal  normal  0.92182 
 
 
-
 
NC_009675  Anae109_0467  response regulator receiver protein  35.04 
 
 
124 aa  72.8  0.000000000001  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.117091  normal  0.827791 
 
 
-
 
NC_008261  CPF_0623  DNA-binding response regulator  34.78 
 
 
231 aa  73.2  0.000000000001  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000212568  n/a   
 
 
-
 
NC_008262  CPR_0609  DNA-binding response regulator  34.78 
 
 
231 aa  73.6  0.000000000001  Clostridium perfringens SM101  Bacteria  hitchhiker  0.0000282114  n/a   
 
 
-
 
NC_008554  Sfum_2092  two component, sigma54 specific, Fis family transcriptional regulator  34.48 
 
 
462 aa  73.2  0.000000000001  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.131918 
 
 
-
 
NC_013223  Dret_2392  two component, sigma54 specific, transcriptional regulator, Fis family  37.39 
 
 
458 aa  73.2  0.000000000001  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0321511  normal 
 
 
-
 
NC_009504  BOV_A0413  putative transcriptional regulatory protein OmpR  34.75 
 
 
238 aa  72.4  0.000000000002  Brucella ovis ATCC 25840  Bacteria  normal  0.16231  n/a   
 
 
-
 
NC_009439  Pmen_0965  two-component response regulator PilR  35.04 
 
 
446 aa  72.4  0.000000000002  Pseudomonas mendocina ymp  Bacteria  normal  0.25964  normal 
 
 
-
 
NC_004311  BRA0474  transcriptional regulatory protein OmpR, putative  34.75 
 
 
238 aa  72.4  0.000000000002  Brucella suis 1330  Bacteria  normal  0.558106  n/a   
 
 
-
 
NC_009953  Sare_1866  response regulator receiver modulated diguanylate cyclase  36.44 
 
 
326 aa  72  0.000000000002  Salinispora arenicola CNS-205  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_1635  two component, sigma54 specific, transcriptional regulator, Fis family  38.79 
 
 
457 aa  72  0.000000000002  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_009441  Fjoh_3400  two component transcriptional regulator  33.33 
 
 
224 aa  72.8  0.000000000002  Flavobacterium johnsoniae UW101  Bacteria  normal  0.105495  n/a   
 
 
-
 
NC_009972  Haur_0605  adenylate/guanylate cyclase  33.61 
 
 
355 aa  72.4  0.000000000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.657653  n/a   
 
 
-
 
NC_011206  Lferr_0029  two component, sigma54 specific, transcriptional regulator, Fis family  39.13 
 
 
455 aa  72.4  0.000000000002  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.59486  normal  0.125276 
 
 
-
 
NC_009952  Dshi_1081  two component  41.59 
 
 
441 aa  72  0.000000000002  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.136641  normal  0.653656 
 
 
-
 
NC_011761  AFE_0027  sigma-54 dependent transcriptional regulator/response regulator  39.13 
 
 
455 aa  72.4  0.000000000002  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2042  response regulator receiver protein  35.29 
 
 
147 aa  72.4  0.000000000002  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_013124  Afer_0558  two component transcriptional regulator, winged helix family  33.33 
 
 
237 aa  72.4  0.000000000002  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_2008  response regulator receiver protein  34.17 
 
 
404 aa  72  0.000000000002  Opitutus terrae PB90-1  Bacteria  normal  normal  0.325522 
 
 
-
 
NC_008554  Sfum_2806  two component, sigma54 specific, Fis family transcriptional regulator  39.66 
 
 
450 aa  72.8  0.000000000002  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_013223  Dret_0097  two component, sigma54 specific, transcriptional regulator, Fis family  33.91 
 
 
448 aa  72.8  0.000000000002  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_3177  adenylate/guanylate cyclase with GAF and PAS/PAC sensors  35.09 
 
 
971 aa  72.8  0.000000000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_005945  BAS2999  DNA-binding response regulator  28.46 
 
 
224 aa  71.6  0.000000000003  Bacillus anthracis str. Sterne  Bacteria  normal  0.227145  n/a   
 
 
-
 
NC_007958  RPD_0666  response regulator receiver  35.54 
 
 
240 aa  71.6  0.000000000003  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
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