More than 300 homologs were found in PanDaTox collection
for query gene Pmen_0965 on replicon NC_009439
Organism: Pseudomonas mendocina ymp



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_004578  PSPTO_0823  type 4 fimbriae expression regulatory protein pilR  78.6 
 
 
446 aa  707    Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_0722  helix-turn-helix, Fis-type  77.48 
 
 
445 aa  697    Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_4840  two-component response regulator PilR  81.53 
 
 
448 aa  727    Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.43512  normal  0.760188 
 
 
-
 
NC_009656  PSPA7_5187  two-component response regulator PilR  88.57 
 
 
445 aa  789    Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_60260  two-component response regulator PilR  89.46 
 
 
445 aa  793    Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.000000831057 
 
 
-
 
NC_009439  Pmen_0965  two-component response regulator PilR  100 
 
 
446 aa  899    Pseudomonas mendocina ymp  Bacteria  normal  0.25964  normal 
 
 
-
 
NC_008740  Maqu_0874  two component, sigma54 specific, Fis family transcriptional regulator  64.3 
 
 
464 aa  567  1e-160  Marinobacter aquaeolei VT8  Bacteria  normal  0.593832  n/a   
 
 
-
 
NC_011901  Tgr7_2618  two component, sigma54 specific, transcriptional regulator, Fis family  64.76 
 
 
453 aa  553  1e-156  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.153552  n/a   
 
 
-
 
NC_007484  Noc_0723  two component, sigma-54 specific, Fis family transcriptional regulator  62.56 
 
 
444 aa  545  1e-154  Nitrosococcus oceani ATCC 19707  Bacteria  hitchhiker  0.00153946  n/a   
 
 
-
 
NC_007912  Sde_2555  two-component response regulator PilR  58.72 
 
 
459 aa  545  1e-154  Saccharophagus degradans 2-40  Bacteria  normal  0.822177  normal  0.0698623 
 
 
-
 
NC_013889  TK90_2124  two component, sigma54 specific, transcriptional regulator, Fis family  60.55 
 
 
474 aa  535  1e-151  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.0345179 
 
 
-
 
NC_010717  PXO_04881  two-component system regulatory protein  62.31 
 
 
466 aa  531  1e-150  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.476586  n/a   
 
 
-
 
NC_006368  lpp1176  hypothetical protein  58.84 
 
 
442 aa  530  1e-149  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl1182  hypothetical protein  58.84 
 
 
442 aa  530  1e-149  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_011071  Smal_3166  two component, sigma54 specific, transcriptional regulator, Fis family  62.61 
 
 
457 aa  523  1e-147  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.521221  normal 
 
 
-
 
NC_010577  XfasM23_2035  two component, sigma54 specific, Fis family transcriptional regulator  58.51 
 
 
493 aa  516  1.0000000000000001e-145  Xylella fastidiosa M23  Bacteria  normal  0.806395  n/a   
 
 
-
 
NC_010513  Xfasm12_2115  response regulator receiver protein  58.62 
 
 
493 aa  514  1e-144  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0662  helix-turn-helix, Fis-type  60.18 
 
 
451 aa  505  9.999999999999999e-143  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_0258  two component, sigma54 specific, Fis family transcriptional regulator  59.07 
 
 
451 aa  504  1e-141  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.667822  normal 
 
 
-
 
NC_007947  Mfla_0214  two component, sigma54 specific, Fis family transcriptional regulator  57.85 
 
 
455 aa  500  1e-140  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.662344 
 
 
-
 
NC_011662  Tmz1t_3288  two component, sigma54 specific, transcriptional regulator, Fis family  59.55 
 
 
463 aa  487  1e-136  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_1807  two component Fis family transcriptional regulator  57.08 
 
 
440 aa  466  9.999999999999999e-131  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_0380  two component, sigma54 specific, Fis family transcriptional regulator  48.79 
 
 
522 aa  438  9.999999999999999e-123  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0200588 
 
 
-
 
NC_008825  Mpe_A3216  type IV pilus expression regulatory protein  48.8 
 
 
537 aa  436  1e-121  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.422678 
 
 
-
 
NC_007969  Pcryo_0675  two component, sigma54 specific, Fis family transcriptional regulator  58.76 
 
 
579 aa  436  1e-121  Psychrobacter cryohalolentis K5  Bacteria  normal  0.775979  normal 
 
 
-
 
NC_008781  Pnap_3383  two component, sigma54 specific, Fis family transcriptional regulator  50.87 
 
 
475 aa  435  1e-121  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.542066  normal 
 
 
-
 
NC_011992  Dtpsy_2940  two component, sigma54 specific, transcriptional regulator, Fis family  47.61 
 
 
502 aa  430  1e-119  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_3630  two component, sigma54 specific, Fis family transcriptional regulator  47.61 
 
 
502 aa  429  1e-119  Acidovorax sp. JS42  Bacteria  normal  0.670707  normal 
 
 
-
 
NC_011206  Lferr_0364  two component, sigma54 specific, transcriptional regulator, Fis family  50.68 
 
 
451 aa  422  1e-117  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.48055 
 
 
-
 
NC_013422  Hneap_2269  two component, sigma54 specific, transcriptional regulator, Fis family  49.59 
 
 
493 aa  419  1e-116  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_3345  two component, sigma54 specific, Fis family transcriptional regulator  48.82 
 
 
483 aa  420  1e-116  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_011761  AFE_0185  type IV fimbriae expression regulatory protein PilR, putative  50.45 
 
 
445 aa  421  1e-116  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.103259  n/a   
 
 
-
 
NC_007347  Reut_A2943  helix-turn-helix, Fis-type  48.43 
 
 
529 aa  417  9.999999999999999e-116  Ralstonia eutropha JMP134  Bacteria  normal  0.0374645  n/a   
 
 
-
 
NC_010002  Daci_1503  two component, sigma54 specific, Fis family transcriptional regulator  47.73 
 
 
513 aa  414  1e-114  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_0866  two component, sigma54 specific, Fis family transcriptional regulator  48 
 
 
496 aa  414  1e-114  Acidovorax citrulli AAC00-1  Bacteria  normal  0.555974  normal  0.133337 
 
 
-
 
NC_008786  Veis_1498  two component, sigma54 specific, Fis family transcriptional regulator  46.33 
 
 
500 aa  410  1e-113  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_1110  two component, sigma54 specific, Fis family transcriptional regulator  47.78 
 
 
480 aa  405  1.0000000000000001e-112  Polaromonas sp. JS666  Bacteria  normal  0.0589584  normal 
 
 
-
 
NC_012791  Vapar_0958  two component, sigma54 specific, transcriptional regulator, Fis family  47.24 
 
 
513 aa  404  1e-111  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_2642  two component, sigma54 specific, transcriptional regulator, Fis family  57.18 
 
 
542 aa  397  1e-109  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_3052  two component, sigma54 specific, transcriptional regulator, Fis family  56.92 
 
 
541 aa  397  1e-109  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc2807  response regulator transcription regulator protein  56.88 
 
 
570 aa  395  1e-108  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.524986 
 
 
-
 
NC_007973  Rmet_3090  Fis family transcriptional regulator  55.47 
 
 
560 aa  394  1e-108  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_009943  Dole_0516  two component, sigma54 specific, Fis family transcriptional regulator  44.52 
 
 
468 aa  392  1e-108  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.000971097  n/a   
 
 
-
 
NC_013440  Hoch_4153  two component, sigma54 specific, transcriptional regulator, Fis family  45.47 
 
 
466 aa  374  1e-102  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.11717 
 
 
-
 
NC_009720  Xaut_1032  two component, sigma54 specific, Fis family transcriptional regulator  45.23 
 
 
461 aa  374  1e-102  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.454426 
 
 
-
 
NC_007760  Adeh_0626  two component, sigma54 specific, Fis family transcriptional regulator  46.71 
 
 
460 aa  370  1e-101  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_0660  two component, sigma54 specific, transcriptional regulator, Fis family  46.71 
 
 
460 aa  366  1e-100  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_3407  two component, sigma54 specific, transcriptional regulator, Fis family  43.83 
 
 
458 aa  368  1e-100  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_0671  two component, sigma54 specific, Fis family transcriptional regulator  47.12 
 
 
457 aa  367  1e-100  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.288415  normal 
 
 
-
 
NC_009483  Gura_2678  two component, sigma-54 specific, Fis family transcriptional regulator  42.7 
 
 
457 aa  363  2e-99  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_2092  two component, sigma54 specific, Fis family transcriptional regulator  42.07 
 
 
462 aa  364  2e-99  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.131918 
 
 
-
 
NC_011891  A2cp1_0660  two component, sigma54 specific, transcriptional regulator, Fis family  45.73 
 
 
461 aa  362  5.0000000000000005e-99  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_2109  two component, sigma54 specific, transcriptional regulator, Fis family  44.17 
 
 
515 aa  360  3e-98  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_007517  Gmet_1397  two component, sigma54 specific, Fis family transcriptional regulator  44.74 
 
 
458 aa  359  6e-98  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_011891  A2cp1_2056  two component, sigma54 specific, transcriptional regulator, Fis family  42.21 
 
 
473 aa  353  2e-96  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.732718  n/a   
 
 
-
 
NC_011145  AnaeK_1971  two component, sigma54 specific, transcriptional regulator, Fis family  42.21 
 
 
473 aa  353  2e-96  Anaeromyxobacter sp. K  Bacteria  normal  0.0887215  n/a   
 
 
-
 
NC_013223  Dret_0097  two component, sigma54 specific, transcriptional regulator, Fis family  41.32 
 
 
448 aa  354  2e-96  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_007760  Adeh_1908  two component, sigma54 specific, Fis family transcriptional regulator  42.21 
 
 
473 aa  354  2e-96  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2158  two component, sigma54 specific, transcriptional regulator, Fis family  43.23 
 
 
453 aa  353  4e-96  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_1994  two component signal transduction response regulator  40.8 
 
 
477 aa  352  5.9999999999999994e-96  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_1430  acetoacetate metabolism regulatory protein AtoC  41.41 
 
 
461 aa  352  8.999999999999999e-96  Escherichia coli ATCC 8739  Bacteria  normal  0.324678  hitchhiker  0.00137179 
 
 
-
 
NC_008609  Ppro_1655  two component, sigma54 specific, Fis family transcriptional regulator  42.2 
 
 
462 aa  351  1e-95  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.000025661  n/a   
 
 
-
 
NC_008609  Ppro_3351  two component, sigma54 specific, Fis family transcriptional regulator  42.22 
 
 
465 aa  351  1e-95  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_02147  fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein  41.41 
 
 
461 aa  350  2e-95  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1438  two component, sigma54 specific, transcriptional regulator, Fis family  41.41 
 
 
461 aa  350  2e-95  Escherichia coli DH1  Bacteria  normal  0.445705  n/a   
 
 
-
 
NC_009800  EcHS_A2361  acetoacetate metabolism regulatory protein AtoC  41.41 
 
 
461 aa  350  2e-95  Escherichia coli HS  Bacteria  normal  0.18992  n/a   
 
 
-
 
NC_012892  B21_02106  hypothetical protein  41.41 
 
 
461 aa  350  2e-95  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_2369  acetoacetate metabolism regulatory protein AtoC  41.41 
 
 
461 aa  350  3e-95  Escherichia coli SMS-3-5  Bacteria  normal  0.0790211  normal 
 
 
-
 
NC_007498  Pcar_2145  two component signal transduction response regulator  41.87 
 
 
492 aa  349  5e-95  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_1635  two component, sigma54 specific, transcriptional regulator, Fis family  43.48 
 
 
457 aa  347  2e-94  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_007947  Mfla_0911  two component, sigma54 specific, Fis family transcriptional regulator  44.07 
 
 
456 aa  347  3e-94  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_1055  two component, sigma54 specific, Fis family transcriptional regulator  44.07 
 
 
456 aa  347  3e-94  Methylobacillus flagellatus KT  Bacteria  normal  0.523432  normal 
 
 
-
 
NC_002939  GSU1495  sigma-54 dependent DNA-binding response regulator  43.23 
 
 
458 aa  346  4e-94  Geobacter sulfurreducens PCA  Bacteria  normal  0.301103  n/a   
 
 
-
 
NC_009483  Gura_4192  two component, sigma-54 specific, Fis family transcriptional regulator  41.65 
 
 
454 aa  346  4e-94  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.00227342  n/a   
 
 
-
 
NC_009675  Anae109_4389  two component, sigma54 specific, Fis family transcriptional regulator  42.08 
 
 
495 aa  345  8e-94  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.205713  normal  0.107293 
 
 
-
 
NC_011146  Gbem_3819  two component, sigma54 specific, transcriptional regulator, Fis family  41.7 
 
 
455 aa  345  8e-94  Geobacter bemidjiensis Bem  Bacteria  normal  0.785821  n/a   
 
 
-
 
NC_009253  Dred_1510  two component, sigma54 specific, Fis family transcriptional regulator  39.96 
 
 
448 aa  345  8.999999999999999e-94  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_0173  two component, sigma54 specific, transcriptional regulator, Fis family  43.42 
 
 
463 aa  345  1e-93  Ammonifex degensii KC4  Bacteria  normal  0.127235  n/a   
 
 
-
 
NC_008554  Sfum_3111  two component, sigma54 specific, Fis family transcriptional regulator  42.98 
 
 
458 aa  345  1e-93  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_2591  two component, sigma54 specific, transcriptional regulator, Fis family  42.89 
 
 
457 aa  344  2e-93  Geobacter bemidjiensis Bem  Bacteria  normal  0.313706  n/a   
 
 
-
 
NC_011145  AnaeK_3555  two component, sigma54 specific, transcriptional regulator, Fis family  42.16 
 
 
489 aa  344  2e-93  Anaeromyxobacter sp. K  Bacteria  normal  0.369206  n/a   
 
 
-
 
NC_011891  A2cp1_3623  two component, sigma54 specific, transcriptional regulator, Fis family  42.16 
 
 
489 aa  344  2e-93  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.568637  n/a   
 
 
-
 
NC_011145  AnaeK_0673  two component, sigma54 specific, transcriptional regulator, Fis family  44.83 
 
 
457 aa  344  2e-93  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU0372  sigma-54 dependent DNA-binding response regulator  42 
 
 
461 aa  343  2.9999999999999997e-93  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_0673  two component, sigma54 specific, transcriptional regulator, Fis family  44.4 
 
 
458 aa  343  2.9999999999999997e-93  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E4497  transcriptional regulatory protein ZraR  43.41 
 
 
441 aa  343  4e-93  Shigella boydii CDC 3083-94  Bacteria  hitchhiker  0.0000279415  n/a   
 
 
-
 
NC_010730  SYO3AOP1_0590  two component, sigma54 specific, transcriptional regulator, Fis family  38.8 
 
 
440 aa  343  4e-93  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2666  two component, sigma54 specific, transcriptional regulator, Fis family  43.49 
 
 
459 aa  343  4e-93  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_4454  transcriptional regulatory protein ZraR  43.18 
 
 
441 aa  343  4e-93  Escherichia coli SMS-3-5  Bacteria  normal  0.209341  hitchhiker  0.000519331 
 
 
-
 
NC_009675  Anae109_0684  two component, sigma54 specific, Fis family transcriptional regulator  44.37 
 
 
456 aa  342  5e-93  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_3765  two component, sigma54 specific, Fis family transcriptional regulator  41.32 
 
 
463 aa  342  5.999999999999999e-93  Syntrophobacter fumaroxidans MPOB  Bacteria  decreased coverage  0.000821276  normal 
 
 
-
 
CP001509  ECD_03881  fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein  43.41 
 
 
441 aa  342  7e-93  Escherichia coli BL21(DE3)  Bacteria  normal  0.0124745  n/a   
 
 
-
 
NC_010468  EcolC_4021  transcriptional regulatory protein ZraR  43.41 
 
 
441 aa  342  7e-93  Escherichia coli ATCC 8739  Bacteria  normal  0.0128092  normal  0.0227655 
 
 
-
 
NC_007760  Adeh_3471  two component, sigma54 specific, Fis family transcriptional regulator  41.74 
 
 
489 aa  342  7e-93  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_0200  two component, sigma54 specific, transcriptional regulator, Fis family  40.98 
 
 
449 aa  342  7e-93  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_012892  B21_03834  hypothetical protein  43.41 
 
 
441 aa  342  7e-93  Escherichia coli BL21  Bacteria  normal  0.0118236  n/a   
 
 
-
 
NC_013440  Hoch_2510  two component, sigma54 specific, transcriptional regulator, Fis family  40.51 
 
 
472 aa  342  8e-93  Haliangium ochraceum DSM 14365  Bacteria  normal  0.0791346  normal 
 
 
-
 
NC_012918  GM21_3903  two component, sigma54 specific, transcriptional regulator, Fis family  41.48 
 
 
455 aa  342  8e-93  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.000574971 
 
 
-
 
NC_009801  EcE24377A_4549  transcriptional regulatory protein ZraR  43.18 
 
 
441 aa  341  1e-92  Escherichia coli E24377A  Bacteria  hitchhiker  0.000369022  n/a   
 
 
-
 
NC_013173  Dbac_2713  two component, sigma54 specific, transcriptional regulator, Fis family  42.14 
 
 
454 aa  341  1e-92  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
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