| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0823 |
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| Symbol | pilR |
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| ID | 1182448 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 889587 |
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| End bp | 890927 |
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| Gene Length | 1341 bp |
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| Protein Length | 446 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637392203 |
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| Product | type 4 fimbriae expression regulatory protein pilR |
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| Protein accession | NP_790670 |
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| Protein GI | 28868051 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCAAC GGCAAAAGAT CCTGATAGTC GATGATGAGC CGGATATTCG CGAACTCCTG
GAGATCACCC TCGGGCGCAT GAAGCTCGAC ACGCGCAGCG CCCGCAACGT TGCCGAGGCC
CATGACTGGC TGGCCCGCGA GCCGTTCGAT ATGTGCCTGA CCGACATGCG CCTGCCCGAT
GGCAACGGCC TGGAACTGGT GCAGCACATC CAGCACGGCT ACCCCCATGT GCCAGTGGCG
ATGATCACCG CCCACGGCAA CCTGGACACG GCGATTCATG CGTTAAAAGC CGGGGCCTTC
GATTTCGTGA CCAAACCGGT GGACCTCAAC CGGCTCCGCG AACTGGTCAA TAGTGCTCTG
AGCCTGCCCT CCGCCACTCA ACCGGTGCAC AGCATCGACA GCCGTCTGCT GGGTGATTCG
CCGCCGATGC GCACCCTGCG CAACCAGATC GGCAAGCTGG CGCGCAGCCA GGCACCCATC
TACATCAGCG GCGAATCGGG CAGTGGCAAA GAGCTGGTAG CCCGACTGAT TCACGAGCAA
GGGCCGCGCA TCGACAAACC GTTCGTGCCG GTCAACTGCG GGGCTATCCC TTCCGAATTG
ATGGAGAGCG AATTCTTCGG CCATCGCAAA GGCAGCTTCA GCGGTGCCCA CGAAGACAAG
CCAGGGTTGT TTCAGGCGGC GCACAACGGC ACGCTGTTTC TTGATGAGGT CGCTGATCTG
CCGCTGGCCA TGCAGGTAAA ACTGCTGCGC GCGATCCAGG AAAAGTCCAT CCGCAGCGTC
GGCGGTCAGC AGGAGCAGGT CGTTGACGTG CGCATTCTAT GCGCCACCCA CAAGGACCTG
AATATCGAAG TCGCTGCAGG TCGTTTCCGT CAGGACCTGT ATTACCGACT GAACGTGATC
GAACTGCGCG TACCTTCACT GCGCGAGCGG CGTGAGGATA TCGATCAGTT GGCAGCCAGT
GTTTTGCGAC GACTTGCCGG CAACGGCGCT CAGCCCGTCG CGCGCCTGCA TGCGCATGCA
CTGGAAACGC TAAAAAGTTA TCGATTCCCC GGGAACGTGC GCGAACTGGA AAACATGCTG
GAACGCGCTT ACACCCTCTG TGAAAACTAT GAGATCCACG CCAGCGACCT GCGTCTGGCA
GAGTCCGCCA GCCCCCAGGC ACAACAGGGT GCGAACCTGG CTGATATCGA TAACCTGGAA
GACTACCTGG AAAGCATCGA ACGCACACTC ATCCTCCAGG CGCTGGAAGA AACCCGCTGG
AACCGCACCG CAGCGGCCGA GCGGCTCAGT TTGTCATTCA GATCGTTGCG TTACCGGTTG
AAGAAGCTGG GGCTGGATTG A
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| Protein sequence | MSQRQKILIV DDEPDIRELL EITLGRMKLD TRSARNVAEA HDWLAREPFD MCLTDMRLPD
GNGLELVQHI QHGYPHVPVA MITAHGNLDT AIHALKAGAF DFVTKPVDLN RLRELVNSAL
SLPSATQPVH SIDSRLLGDS PPMRTLRNQI GKLARSQAPI YISGESGSGK ELVARLIHEQ
GPRIDKPFVP VNCGAIPSEL MESEFFGHRK GSFSGAHEDK PGLFQAAHNG TLFLDEVADL
PLAMQVKLLR AIQEKSIRSV GGQQEQVVDV RILCATHKDL NIEVAAGRFR QDLYYRLNVI
ELRVPSLRER REDIDQLAAS VLRRLAGNGA QPVARLHAHA LETLKSYRFP GNVRELENML
ERAYTLCENY EIHASDLRLA ESASPQAQQG ANLADIDNLE DYLESIERTL ILQALEETRW
NRTAAAERLS LSFRSLRYRL KKLGLD
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