| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0965 |
|---|
| Symbol | |
|---|
| ID | 5108587 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 1089656 |
|---|
| End bp | 1090996 |
|---|
| Gene Length | 1341 bp |
|---|
| Protein Length | 446 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640502182 |
|---|
| Product | two-component response regulator PilR |
|---|
| Protein accession | YP_001186465 |
|---|
| Protein GI | 146306000 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.25964 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCGCC AGAGAGCCTT GATCGTCGAC GACGAACCGG ACATCCGCGA ACTGCTGGAA
ATCACCCTCG GCCGGATGAA GCTGGACACG CGCAGCGCAC GCAACGTCAA GGAAGCGCGC
GAATGGCTGG CCCGCGAGCC GTTCGACCTG TGCCTGACCG ACATGCGCCT GCCCGACGGC
ACCGGCCTCG ACCTGGTGCA ACACATCCAG CAGCGCCACC CGCAGGTACC GGTGGCGATG
ATCACCGCCT ACGGCAGCCT GGATACCGCG ATCAACGCGC TCAAGGCCGG CGCCTTCGAT
TTCGTCACCA AGCCGGTGGA CCTCGGCCGC CTGCGCGAGC TGGTCGCCAC CGCCCTGCGC
ATCCGCTCCC CCGAGGGCGA AGGCGCTCCG GTGGACAACC GCCTGCTCGG CGACTCGCCG
CCGATGAAGG CACTGCGCAA GCAGATCCAG AAGCTCGCCC GCAGCCAGGC GCCGGTGTAT
ATCAGCGGCG AGTCCGGCAG CGGCAAGGAA CTGGTGGCGC GTCTGATCCA CGAGCAGGGC
CCGCGCGCCG AACAGCCGTT CGTCCCGGTC AACTGCGGCG CCATCCCTTC GGAGCTGATG
GAGAGCGAGT TCTTCGGCCA CAAGAAAGGC AGCTTCACCG GGGCCATCGA GGACAAGCAG
GGCCTGTTCC AGGCCGCCAA CGGCGGCACC CTGTTCCTCG ACGAAGTGGC CGACCTGCCG
CTGCCGATGC AGGTCAAGCT GCTGCGCGCC ATTCAGGAAA AGGCCGTACG CGCCGTCGGT
GGTCAGCAGG AAGTGGTGGT CGATGTGCGC ATCCTCTGCG CCACCCACAA GGATTTGGCC
GCCGAGGTGG CCGCCGGGCG CTTCCGCCAA GACCTCTACT ACCGCCTCAA CGTCATCGAA
CTGCGCGTGC CACCGCTGCG CGAACGCCGC GAGGACATCG CCCAACTGGC CGAGGTCATG
CTCGCCCGCC TGGCCGAGGG TAGCGGTCTG AGCGCCGCCA AGCTGCAGCC CGAAGCCTTG
GAGAAACTGA AGAACTATCG CTTCCCGGGC AACGTGCGCG AGCTGGAGAA CATGCTCGAA
CGCGCCTACA CCCTGTGCGA GGACGACCAG ATCAGACCCG CCGACCTACG CCTGGCCGAT
GCGAGCGGCC CCAGCGGCGA AACCGGCGAG GCCAGCCTGG CGCTGATCGA CAATCTGGAA
GACTATCTCG AAGGCATCGA ACGCAAACTG ATCATGCAGG CGCTCGAAGA AACCCGCTGG
AACCGCACGG CGGCGGCCCA GCGCCTGGGC CTGACCTTCC GTTCGATGCG CTATCGATTG
AAGAAGCTGG GGATCGACTA A
|
|---|
| Protein sequence | MTRQRALIVD DEPDIRELLE ITLGRMKLDT RSARNVKEAR EWLAREPFDL CLTDMRLPDG
TGLDLVQHIQ QRHPQVPVAM ITAYGSLDTA INALKAGAFD FVTKPVDLGR LRELVATALR
IRSPEGEGAP VDNRLLGDSP PMKALRKQIQ KLARSQAPVY ISGESGSGKE LVARLIHEQG
PRAEQPFVPV NCGAIPSELM ESEFFGHKKG SFTGAIEDKQ GLFQAANGGT LFLDEVADLP
LPMQVKLLRA IQEKAVRAVG GQQEVVVDVR ILCATHKDLA AEVAAGRFRQ DLYYRLNVIE
LRVPPLRERR EDIAQLAEVM LARLAEGSGL SAAKLQPEAL EKLKNYRFPG NVRELENMLE
RAYTLCEDDQ IRPADLRLAD ASGPSGETGE ASLALIDNLE DYLEGIERKL IMQALEETRW
NRTAAAQRLG LTFRSMRYRL KKLGID
|
|---|
| |