| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0380 |
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| Symbol | |
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| ID | 6163870 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 415560 |
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| End bp | 417128 |
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| Gene Length | 1569 bp |
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| Protein Length | 522 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641663129 |
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| Product | two component, sigma54 specific, Fis family transcriptional regulator |
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| Protein accession | YP_001789420 |
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| Protein GI | 171057071 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.0200588 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCCGT CGCCCCTCCA CAGCCTGCTG GTCGTTGATG ACGAGCCGGA CCTGCGCACG
CTCTACGAAC TGACGCTGCT GCGCGAGGGC TACGAGGTCG AGACCGCGGC CACCGTCGAG
GAGGCCTGGG CCCAGTTGAA GGACCGCACC TACAGCGTGC TGATCACCGA CATGCGGCTG
CCCGACGGCA ACGGCCTCGA GCTGCTGCGG CGCCTCGAGC AGAGCGGCCG CAGCGAGCGC
ACCATCGTCA TCACCGCCTA CGGTTCGGCC GAAAACGCCG TGCTGGCGCT CAAGGCCGGG
GCCTACGACT ACCTCACCAA GCCGGTCGAC CTGAAGCTGT TCCGCAGCGT CATCGCCTCC
GCGCTGGGCC GCACGCCGAA CGTGCGCGGC ACGGCGGCGT CGGCGGATGT GCCGGCCGAT
TTCGGCCACG GCTCGCGCCT GCTTGCGCGC CGCAGCAGCG ACAACGGCAG TGCCGCCTTG
CGGCGCATGG CCGGCCAGTC GCAGGCCATG CAGCAGGTGC GCGAACTGGT CGAGAAGGTT
GCGCGCAGCA TGGCGCCGGT GCTGGTCCAG GGCGAGTCGG GTACCGGCAA GGAACTGGTC
GCGCGCTCGA TCCACCAGGT CAGCGCGCGC GCGGCCCAGC CCTTCATCGC GGTCAACTGC
GGCGCCATCC CCGAGCAGCT GCTCGAGGCC GAGTTCTTCG GCTACCGCAA GGGCGCCTTC
ACCGGCGCGG CCGAAGACCG CGAGGGCTTC TTCCAGGCCG CGCGCGGCGG CACCCTGTTC
CTCGACGAGA TCGGCGACCT GCCGATCTCG ATGCAGAGCA AGCTGCTGCG GGCGATCCAG
GAGCGTGCCG TGCGGCCGGT GGGCGCGGTC AGCGAGGTGC CGCTCGACGT GCGCATCATC
AGCGCCACCC ATCGCGATCT CGCCACCGAG GTGGCGGCGG GGCGTTTCCG CCAGGACCTC
TATTACCGCC TCAACGTGAT CCAGATCCGC GTGCCGCCCT TGCGCGAGCG CAGCGACGAC
CTGCCCGAAC TGTGCACCCG CGTGCTCGAA CGCATCGCCG CCGACACCGG CCTGACCCAG
ATCCCGCGGC TGACCGTGCA GGCGCTCGAA CACCTGGCGC GCTACGACTT CCCTGGCAAC
GTGCGCGAGC TCGAGAACCT GCTGCACCGC GCGCTGGCCC TGTCCGGCGC GGCGCAGATC
TGTGTCGACG ACCTCGAGCT GCCGCGTGGC CAGGCCCGCG CGGGCGAGGG CGGCTGGGGC
GTTGCGCCGC CCGCATCGAC CGCCTTGCAG GCGACCCAGC CGCCGGGGGC TGCCGTGGCG
GACACCGGCG CCCCGCCGGC CAGCCTCGCC GACCTGGCGA TCCCGACCGA CCTCGTCGGC
TACCTCGACG AGGTCGAGCG TGCGGTGCTG GTGCGCGCCC TCGAACGCCA CCGCTACAAC
CGCACCGCGG CCGGCTCCAG CATGGGTCTG ACCCTGCGGC AGATGCGCTA TCGCATGGCG
CGCCTGGGCA TCCACGTCGC CGGCGAGGGC CTGATGGTCG ACGACGTCGA CGGCACCGGC
CTCGAATGA
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| Protein sequence | MSPSPLHSLL VVDDEPDLRT LYELTLLREG YEVETAATVE EAWAQLKDRT YSVLITDMRL
PDGNGLELLR RLEQSGRSER TIVITAYGSA ENAVLALKAG AYDYLTKPVD LKLFRSVIAS
ALGRTPNVRG TAASADVPAD FGHGSRLLAR RSSDNGSAAL RRMAGQSQAM QQVRELVEKV
ARSMAPVLVQ GESGTGKELV ARSIHQVSAR AAQPFIAVNC GAIPEQLLEA EFFGYRKGAF
TGAAEDREGF FQAARGGTLF LDEIGDLPIS MQSKLLRAIQ ERAVRPVGAV SEVPLDVRII
SATHRDLATE VAAGRFRQDL YYRLNVIQIR VPPLRERSDD LPELCTRVLE RIAADTGLTQ
IPRLTVQALE HLARYDFPGN VRELENLLHR ALALSGAAQI CVDDLELPRG QARAGEGGWG
VAPPASTALQ ATQPPGAAVA DTGAPPASLA DLAIPTDLVG YLDEVERAVL VRALERHRYN
RTAAGSSMGL TLRQMRYRMA RLGIHVAGEG LMVDDVDGTG LE
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