More than 300 homologs were found in PanDaTox collection
for query gene Pfl01_4840 on replicon NC_007492
Organism: Pseudomonas fluorescens Pf0-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009656  PSPA7_5187  two-component response regulator PilR  80.14 
 
 
445 aa  711    Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_0823  type 4 fimbriae expression regulatory protein pilR  80.9 
 
 
446 aa  723    Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_0722  helix-turn-helix, Fis-type  79.78 
 
 
445 aa  705    Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_4840  two-component response regulator PilR  100 
 
 
448 aa  910    Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.43512  normal  0.760188 
 
 
-
 
NC_009439  Pmen_0965  two-component response regulator PilR  81.53 
 
 
446 aa  727    Pseudomonas mendocina ymp  Bacteria  normal  0.25964  normal 
 
 
-
 
NC_008463  PA14_60260  two-component response regulator PilR  80.14 
 
 
445 aa  709    Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.000000831057 
 
 
-
 
NC_007484  Noc_0723  two component, sigma-54 specific, Fis family transcriptional regulator  63.29 
 
 
444 aa  541  9.999999999999999e-153  Nitrosococcus oceani ATCC 19707  Bacteria  hitchhiker  0.00153946  n/a   
 
 
-
 
NC_011901  Tgr7_2618  two component, sigma54 specific, transcriptional regulator, Fis family  64.14 
 
 
453 aa  538  9.999999999999999e-153  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.153552  n/a   
 
 
-
 
NC_008740  Maqu_0874  two component, sigma54 specific, Fis family transcriptional regulator  61.9 
 
 
464 aa  538  1e-151  Marinobacter aquaeolei VT8  Bacteria  normal  0.593832  n/a   
 
 
-
 
NC_007912  Sde_2555  two-component response regulator PilR  58.11 
 
 
459 aa  532  1e-150  Saccharophagus degradans 2-40  Bacteria  normal  0.822177  normal  0.0698623 
 
 
-
 
NC_013889  TK90_2124  two component, sigma54 specific, transcriptional regulator, Fis family  60.3 
 
 
474 aa  515  1.0000000000000001e-145  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.0345179 
 
 
-
 
NC_006368  lpp1176  hypothetical protein  57.34 
 
 
442 aa  512  1e-144  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl1182  hypothetical protein  57.34 
 
 
442 aa  512  1e-144  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_011071  Smal_3166  two component, sigma54 specific, transcriptional regulator, Fis family  62.31 
 
 
457 aa  512  1e-144  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.521221  normal 
 
 
-
 
NC_007298  Daro_0662  helix-turn-helix, Fis-type  59.95 
 
 
451 aa  506  9.999999999999999e-143  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_010577  XfasM23_2035  two component, sigma54 specific, Fis family transcriptional regulator  56.99 
 
 
493 aa  503  1e-141  Xylella fastidiosa M23  Bacteria  normal  0.806395  n/a   
 
 
-
 
NC_010717  PXO_04881  two-component system regulatory protein  59.91 
 
 
466 aa  504  1e-141  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.476586  n/a   
 
 
-
 
NC_010513  Xfasm12_2115  response regulator receiver protein  56.57 
 
 
493 aa  499  1e-140  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_0214  two component, sigma54 specific, Fis family transcriptional regulator  59.01 
 
 
455 aa  499  1e-140  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.662344 
 
 
-
 
NC_008340  Mlg_0258  two component, sigma54 specific, Fis family transcriptional regulator  58.09 
 
 
451 aa  499  1e-140  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.667822  normal 
 
 
-
 
NC_011662  Tmz1t_3288  two component, sigma54 specific, transcriptional regulator, Fis family  59.77 
 
 
463 aa  487  1e-136  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_1807  two component Fis family transcriptional regulator  56.54 
 
 
440 aa  454  1.0000000000000001e-126  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_0380  two component, sigma54 specific, Fis family transcriptional regulator  48.61 
 
 
522 aa  442  1e-123  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0200588 
 
 
-
 
NC_008825  Mpe_A3216  type IV pilus expression regulatory protein  46.86 
 
 
537 aa  429  1e-119  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.422678 
 
 
-
 
NC_007969  Pcryo_0675  two component, sigma54 specific, Fis family transcriptional regulator  53.88 
 
 
579 aa  421  1e-116  Psychrobacter cryohalolentis K5  Bacteria  normal  0.775979  normal 
 
 
-
 
NC_007908  Rfer_3345  two component, sigma54 specific, Fis family transcriptional regulator  49.67 
 
 
483 aa  414  1e-114  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_3383  two component, sigma54 specific, Fis family transcriptional regulator  48.58 
 
 
475 aa  414  1e-114  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.542066  normal 
 
 
-
 
NC_008752  Aave_0866  two component, sigma54 specific, Fis family transcriptional regulator  47.94 
 
 
496 aa  407  1.0000000000000001e-112  Acidovorax citrulli AAC00-1  Bacteria  normal  0.555974  normal  0.133337 
 
 
-
 
NC_013422  Hneap_2269  two component, sigma54 specific, transcriptional regulator, Fis family  48.67 
 
 
493 aa  406  1.0000000000000001e-112  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_2940  two component, sigma54 specific, transcriptional regulator, Fis family  46.33 
 
 
502 aa  404  1e-111  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_2642  two component, sigma54 specific, transcriptional regulator, Fis family  56.96 
 
 
542 aa  403  1e-111  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_3052  two component, sigma54 specific, transcriptional regulator, Fis family  56.96 
 
 
541 aa  403  1e-111  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_1498  two component, sigma54 specific, Fis family transcriptional regulator  46.3 
 
 
500 aa  403  1e-111  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_3630  two component, sigma54 specific, Fis family transcriptional regulator  46.12 
 
 
502 aa  404  1e-111  Acidovorax sp. JS42  Bacteria  normal  0.670707  normal 
 
 
-
 
NC_010002  Daci_1503  two component, sigma54 specific, Fis family transcriptional regulator  46.11 
 
 
513 aa  399  9.999999999999999e-111  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_011206  Lferr_0364  two component, sigma54 specific, transcriptional regulator, Fis family  48.85 
 
 
451 aa  392  1e-108  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.48055 
 
 
-
 
NC_007948  Bpro_1110  two component, sigma54 specific, Fis family transcriptional regulator  48.74 
 
 
480 aa  393  1e-108  Polaromonas sp. JS666  Bacteria  normal  0.0589584  normal 
 
 
-
 
NC_003295  RSc2807  response regulator transcription regulator protein  55.76 
 
 
570 aa  389  1e-107  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.524986 
 
 
-
 
NC_011761  AFE_0185  type IV fimbriae expression regulatory protein PilR, putative  48.62 
 
 
445 aa  390  1e-107  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.103259  n/a   
 
 
-
 
NC_007973  Rmet_3090  Fis family transcriptional regulator  53.67 
 
 
560 aa  387  1e-106  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A2943  helix-turn-helix, Fis-type  54.57 
 
 
529 aa  382  1e-105  Ralstonia eutropha JMP134  Bacteria  normal  0.0374645  n/a   
 
 
-
 
NC_013440  Hoch_4153  two component, sigma54 specific, transcriptional regulator, Fis family  46.49 
 
 
466 aa  375  1e-103  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.11717 
 
 
-
 
NC_009943  Dole_0516  two component, sigma54 specific, Fis family transcriptional regulator  42.79 
 
 
468 aa  374  1e-102  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.000971097  n/a   
 
 
-
 
NC_012791  Vapar_0958  two component, sigma54 specific, transcriptional regulator, Fis family  52.73 
 
 
513 aa  367  1e-100  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_0626  two component, sigma54 specific, Fis family transcriptional regulator  46.27 
 
 
460 aa  361  1e-98  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_2678  two component, sigma-54 specific, Fis family transcriptional regulator  43.51 
 
 
457 aa  360  3e-98  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_0660  two component, sigma54 specific, transcriptional regulator, Fis family  45.14 
 
 
460 aa  352  7e-96  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_2092  two component, sigma54 specific, Fis family transcriptional regulator  41.76 
 
 
462 aa  352  1e-95  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.131918 
 
 
-
 
NC_008609  Ppro_1655  two component, sigma54 specific, Fis family transcriptional regulator  42.29 
 
 
462 aa  351  2e-95  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.000025661  n/a   
 
 
-
 
NC_002939  GSU1495  sigma-54 dependent DNA-binding response regulator  43.82 
 
 
458 aa  350  3e-95  Geobacter sulfurreducens PCA  Bacteria  normal  0.301103  n/a   
 
 
-
 
NC_009675  Anae109_0671  two component, sigma54 specific, Fis family transcriptional regulator  45.58 
 
 
457 aa  350  3e-95  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.288415  normal 
 
 
-
 
NC_009720  Xaut_1032  two component, sigma54 specific, Fis family transcriptional regulator  43.21 
 
 
461 aa  350  3e-95  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.454426 
 
 
-
 
NC_012918  GM21_1635  two component, sigma54 specific, transcriptional regulator, Fis family  43.54 
 
 
457 aa  350  4e-95  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_013223  Dret_0097  two component, sigma54 specific, transcriptional regulator, Fis family  41.1 
 
 
448 aa  349  5e-95  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_013223  Dret_2392  two component, sigma54 specific, transcriptional regulator, Fis family  44.77 
 
 
458 aa  349  5e-95  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0321511  normal 
 
 
-
 
NC_010730  SYO3AOP1_0590  two component, sigma54 specific, transcriptional regulator, Fis family  39.37 
 
 
440 aa  349  5e-95  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_0660  two component, sigma54 specific, transcriptional regulator, Fis family  45.85 
 
 
461 aa  349  5e-95  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_2591  two component, sigma54 specific, transcriptional regulator, Fis family  44.01 
 
 
457 aa  348  2e-94  Geobacter bemidjiensis Bem  Bacteria  normal  0.313706  n/a   
 
 
-
 
NC_007517  Gmet_1397  two component, sigma54 specific, Fis family transcriptional regulator  43.3 
 
 
458 aa  347  2e-94  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_007760  Adeh_1908  two component, sigma54 specific, Fis family transcriptional regulator  40.77 
 
 
473 aa  348  2e-94  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_1971  two component, sigma54 specific, transcriptional regulator, Fis family  40.56 
 
 
473 aa  345  7e-94  Anaeromyxobacter sp. K  Bacteria  normal  0.0887215  n/a   
 
 
-
 
NC_011891  A2cp1_2056  two component, sigma54 specific, transcriptional regulator, Fis family  40.56 
 
 
473 aa  345  7e-94  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.732718  n/a   
 
 
-
 
NC_008609  Ppro_1179  two component, sigma54 specific, Fis family transcriptional regulator  42.04 
 
 
457 aa  344  2e-93  Pelobacter propionicus DSM 2379  Bacteria  normal  0.655382  n/a   
 
 
-
 
NC_010814  Glov_3407  two component, sigma54 specific, transcriptional regulator, Fis family  41.87 
 
 
458 aa  343  2.9999999999999997e-93  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_0911  two component, sigma54 specific, Fis family transcriptional regulator  43.47 
 
 
456 aa  343  5e-93  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_1055  two component, sigma54 specific, Fis family transcriptional regulator  43.47 
 
 
456 aa  343  5e-93  Methylobacillus flagellatus KT  Bacteria  normal  0.523432  normal 
 
 
-
 
NC_013173  Dbac_2942  two component, sigma54 specific, transcriptional regulator, Fis family  43.46 
 
 
451 aa  342  9e-93  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_1312  two component, sigma54 specific, Fis family transcriptional regulator  39.78 
 
 
455 aa  341  2e-92  Desulfotomaculum reducens MI-1  Bacteria  normal  0.502008  n/a   
 
 
-
 
NC_007498  Pcar_2145  two component signal transduction response regulator  41.1 
 
 
492 aa  341  2e-92  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_2510  two component, sigma54 specific, transcriptional regulator, Fis family  39.91 
 
 
472 aa  340  2e-92  Haliangium ochraceum DSM 14365  Bacteria  normal  0.0791346  normal 
 
 
-
 
NC_011769  DvMF_2109  two component, sigma54 specific, transcriptional regulator, Fis family  41.72 
 
 
515 aa  340  2.9999999999999998e-92  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_009483  Gura_3740  two component, sigma-54 specific, Fis family transcriptional regulator  41.37 
 
 
454 aa  340  2.9999999999999998e-92  Geobacter uraniireducens Rf4  Bacteria  normal  0.0840186  n/a   
 
 
-
 
NC_010814  Glov_2158  two component, sigma54 specific, transcriptional regulator, Fis family  42.51 
 
 
453 aa  339  5.9999999999999996e-92  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_0970  two component, sigma54 specific, transcriptional regulator, Fis family  40.48 
 
 
459 aa  339  7e-92  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.000694494  normal  0.524712 
 
 
-
 
NC_011146  Gbem_3819  two component, sigma54 specific, transcriptional regulator, Fis family  42.07 
 
 
455 aa  339  7e-92  Geobacter bemidjiensis Bem  Bacteria  normal  0.785821  n/a   
 
 
-
 
NC_010814  Glov_2245  two component, sigma54 specific, transcriptional regulator, Fis family  40.31 
 
 
460 aa  339  7e-92  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_1430  acetoacetate metabolism regulatory protein AtoC  40.49 
 
 
461 aa  337  1.9999999999999998e-91  Escherichia coli ATCC 8739  Bacteria  normal  0.324678  hitchhiker  0.00137179 
 
 
-
 
NC_012918  GM21_3903  two component, sigma54 specific, transcriptional regulator, Fis family  42.07 
 
 
455 aa  337  2.9999999999999997e-91  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.000574971 
 
 
-
 
NC_009483  Gura_0495  two component, sigma-54 specific, Fis family transcriptional regulator  40.26 
 
 
456 aa  337  2.9999999999999997e-91  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_2369  acetoacetate metabolism regulatory protein AtoC  40.49 
 
 
461 aa  336  3.9999999999999995e-91  Escherichia coli SMS-3-5  Bacteria  normal  0.0790211  normal 
 
 
-
 
NC_013173  Dbac_2713  two component, sigma54 specific, transcriptional regulator, Fis family  41.33 
 
 
454 aa  337  3.9999999999999995e-91  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_02147  fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein  40.49 
 
 
461 aa  336  5e-91  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1438  two component, sigma54 specific, transcriptional regulator, Fis family  40.49 
 
 
461 aa  336  5e-91  Escherichia coli DH1  Bacteria  normal  0.445705  n/a   
 
 
-
 
NC_009800  EcHS_A2361  acetoacetate metabolism regulatory protein AtoC  40.49 
 
 
461 aa  336  5e-91  Escherichia coli HS  Bacteria  normal  0.18992  n/a   
 
 
-
 
NC_012892  B21_02106  hypothetical protein  40.49 
 
 
461 aa  336  5e-91  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_3076  two component, sigma54 specific, transcriptional regulator, Fis family  41.14 
 
 
454 aa  336  5.999999999999999e-91  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_1951  two component, sigma54 specific, Fis family transcriptional regulator  41.56 
 
 
470 aa  336  5.999999999999999e-91  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.516267  normal 
 
 
-
 
NC_009675  Anae109_0684  two component, sigma54 specific, Fis family transcriptional regulator  44.42 
 
 
456 aa  335  9e-91  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_1405  two component, sigma54 specific, transcriptional regulator, Fis family  39.23 
 
 
478 aa  335  1e-90  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.0000117702 
 
 
-
 
NC_007517  Gmet_0776  two component, sigma54 specific, Fis family transcriptional regulator  39.87 
 
 
454 aa  335  1e-90  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_011206  Lferr_0029  two component, sigma54 specific, transcriptional regulator, Fis family  44.1 
 
 
455 aa  335  1e-90  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.59486  normal  0.125276 
 
 
-
 
NC_007760  Adeh_4240  two component, sigma54 specific, Fis family transcriptional regulator  41.01 
 
 
469 aa  335  1e-90  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_0173  two component, sigma54 specific, transcriptional regulator, Fis family  42.73 
 
 
463 aa  335  1e-90  Ammonifex degensii KC4  Bacteria  normal  0.127235  n/a   
 
 
-
 
NC_011761  AFE_0027  sigma-54 dependent transcriptional regulator/response regulator  44.1 
 
 
455 aa  335  1e-90  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1320  sigma-54 dependent DNA-binding response regulator  41.7 
 
 
460 aa  334  2e-90  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_2805  two component, sigma54 specific, transcriptional regulator, Fis family  39.23 
 
 
478 aa  334  2e-90  Geobacter bemidjiensis Bem  Bacteria  normal  0.228775  n/a   
 
 
-
 
NC_007517  Gmet_2453  two component, sigma54 specific, Fis family transcriptional regulator  40.53 
 
 
461 aa  334  2e-90  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000196128  normal 
 
 
-
 
NC_010814  Glov_1657  two component, sigma54 specific, transcriptional regulator, Fis family  41.98 
 
 
456 aa  334  2e-90  Geobacter lovleyi SZ  Bacteria  normal  0.0365007  n/a   
 
 
-
 
NC_008554  Sfum_3111  two component, sigma54 specific, Fis family transcriptional regulator  42.19 
 
 
458 aa  334  2e-90  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_010658  SbBS512_E4497  transcriptional regulatory protein ZraR  42.5 
 
 
441 aa  333  3e-90  Shigella boydii CDC 3083-94  Bacteria  hitchhiker  0.0000279415  n/a   
 
 
-
 
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