| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2555 |
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| Symbol | |
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| ID | 3968721 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 3241971 |
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| End bp | 3243350 |
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| Gene Length | 1380 bp |
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| Protein Length | 459 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637921653 |
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| Product | two-component response regulator PilR |
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| Protein accession | YP_528027 |
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| Protein GI | 90022200 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.822177 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0698623 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGACAC AACCAAAAGT ATTGGTTATT GATGACGAGC CAGATATTCG CGAACTGCTT
ACTATTACCT TAAGCAGAAT GGACATAGCT GCCGATACTG CTGCCGATGT AGCTGAAGCT
AAAGCCCAGC TAAGTAAAAA CAAATACAAT TTATGCCTAA CCGACATGAA ACTGCCCGAC
GGCAACGGCA TAGATATTGT GCATTATATT CAACAGCATT CGCCCAGCTT GCCGGTGGCG
CTAATAACCG CACACGGCAA TATGGATATA GCAATTCAAG CCATGAAAGC TGGTGCATTT
GACTTTCTAA ATAAGCCCGT CGACCTAGCC AGCCTGCGTA AACTCGTTGC CACGGCTATT
GCATCTAGCG AACTACCCGA AGAGGAATGC GACGAAAATA CTCGCATTAT TGGCAAGTCT
CCAGCCATAC AAAAATTGAC GGGCAGTATT AAAAAGCTAG CCCGCTCACA GGCGCCTGTT
TACATAAGTG GCGAATCCGG TAGCGGTAAA GAATTAGTCG CACGCTCAAT CCACGAGCTT
GGCCCCCGCA GCAACAAACC GTTTATGCCC GTTAATTGCG GCGCCATCCA AAAAGAACTA
ATGGAAAGTG AATTGTTTGG TCACAAAAAA GGGGCTTTTA CGGGGGCAGT GCAAGACAAA
CAAGGTATTT TTCAAGCTGC TGAAGGCGGT ACGCTATTTC TAGATGAAGT TGCCGATTTG
CCGTTAGACA TGCAAGTAAA ATTACTACGT GCTATACAAG AAAAAGCGGT ACGCCCCGTG
GGTGCAGAAG CCGAAATAAG CACCGATGTA CGCATACTTT GCGCCACGCA CAAAAACTTA
GAAGAACTCG TTCAAAAAGG CGACTTCCGC CAAGATTTAT TTTACAGACT TAACGTTATA
CAACTGGCCG TACCACCGCT TCGCGATCGC ACAGATGACG TTGAAGTACT CGCCAAACAT
GTACTTAAAA AAATTATAGG CCCCGACGAA ACACCGCCCA AATTAGATAA GAGCGCCATT
AACGCGCTTA AACAATATAG CTTCCCGGGC AACGTACGTG AGCTAGAAAA TATTTTAGAG
CGCGCTTACA CGTTGTGTGA GGAAGATGTA ATAAAAGACA CAGACCTTCA GCTATCAAGT
TCACCCAAAA TAGAAAGCGC TTCTTCCTAC ACAGGAACGG TCAATCACTA TAAACAATCC
CAGCAATACG AATCGTTGGA CGACTACCTA GCAGAAATAG AAAAAGAAAT ATTAAGTGAA
GTACTAGAAC AAGTCCGCTG GAATAAAACA TTAGCAGCCA AAAAACTGGG CATCAGCTTT
CGATCTTTTC GTTATCGACT AAGTAAACTC GGTTTGGCTA AAGACTGGCA AGATGAATAG
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| Protein sequence | MTTQPKVLVI DDEPDIRELL TITLSRMDIA ADTAADVAEA KAQLSKNKYN LCLTDMKLPD
GNGIDIVHYI QQHSPSLPVA LITAHGNMDI AIQAMKAGAF DFLNKPVDLA SLRKLVATAI
ASSELPEEEC DENTRIIGKS PAIQKLTGSI KKLARSQAPV YISGESGSGK ELVARSIHEL
GPRSNKPFMP VNCGAIQKEL MESELFGHKK GAFTGAVQDK QGIFQAAEGG TLFLDEVADL
PLDMQVKLLR AIQEKAVRPV GAEAEISTDV RILCATHKNL EELVQKGDFR QDLFYRLNVI
QLAVPPLRDR TDDVEVLAKH VLKKIIGPDE TPPKLDKSAI NALKQYSFPG NVRELENILE
RAYTLCEEDV IKDTDLQLSS SPKIESASSY TGTVNHYKQS QQYESLDDYL AEIEKEILSE
VLEQVRWNKT LAAKKLGISF RSFRYRLSKL GLAKDWQDE
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