More than 300 homologs were found in PanDaTox collection
for query gene Sde_2555 on replicon NC_007912
Organism: Saccharophagus degradans 2-40



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007912  Sde_2555  two-component response regulator PilR  100 
 
 
459 aa  941    Saccharophagus degradans 2-40  Bacteria  normal  0.822177  normal  0.0698623 
 
 
-
 
NC_008740  Maqu_0874  two component, sigma54 specific, Fis family transcriptional regulator  60.43 
 
 
464 aa  556  1e-157  Marinobacter aquaeolei VT8  Bacteria  normal  0.593832  n/a   
 
 
-
 
NC_009656  PSPA7_5187  two-component response regulator PilR  59.87 
 
 
445 aa  555  1e-157  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_60260  two-component response regulator PilR  59.82 
 
 
445 aa  557  1e-157  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.000000831057 
 
 
-
 
NC_009439  Pmen_0965  two-component response regulator PilR  58.72 
 
 
446 aa  545  1e-154  Pseudomonas mendocina ymp  Bacteria  normal  0.25964  normal 
 
 
-
 
NC_007492  Pfl01_4840  two-component response regulator PilR  58.11 
 
 
448 aa  532  1e-150  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.43512  normal  0.760188 
 
 
-
 
NC_004578  PSPTO_0823  type 4 fimbriae expression regulatory protein pilR  57.55 
 
 
446 aa  528  1e-149  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_0722  helix-turn-helix, Fis-type  57.89 
 
 
445 aa  530  1e-149  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007484  Noc_0723  two component, sigma-54 specific, Fis family transcriptional regulator  57.46 
 
 
444 aa  518  1e-146  Nitrosococcus oceani ATCC 19707  Bacteria  hitchhiker  0.00153946  n/a   
 
 
-
 
NC_011901  Tgr7_2618  two component, sigma54 specific, transcriptional regulator, Fis family  57.02 
 
 
453 aa  516  1.0000000000000001e-145  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.153552  n/a   
 
 
-
 
NC_007947  Mfla_0214  two component, sigma54 specific, Fis family transcriptional regulator  56.43 
 
 
455 aa  499  1e-140  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.662344 
 
 
-
 
NC_008340  Mlg_0258  two component, sigma54 specific, Fis family transcriptional regulator  56.79 
 
 
451 aa  499  1e-140  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.667822  normal 
 
 
-
 
NC_006368  lpp1176  hypothetical protein  54.41 
 
 
442 aa  495  1e-139  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl1182  hypothetical protein  54.41 
 
 
442 aa  495  1e-139  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_011071  Smal_3166  two component, sigma54 specific, transcriptional regulator, Fis family  55.24 
 
 
457 aa  497  1e-139  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.521221  normal 
 
 
-
 
NC_007298  Daro_0662  helix-turn-helix, Fis-type  54.81 
 
 
451 aa  493  9.999999999999999e-139  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_010717  PXO_04881  two-component system regulatory protein  54.31 
 
 
466 aa  485  1e-136  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.476586  n/a   
 
 
-
 
NC_013889  TK90_2124  two component, sigma54 specific, transcriptional regulator, Fis family  55.13 
 
 
474 aa  483  1e-135  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.0345179 
 
 
-
 
NC_011662  Tmz1t_3288  two component, sigma54 specific, transcriptional regulator, Fis family  52.61 
 
 
463 aa  462  1e-129  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_010577  XfasM23_2035  two component, sigma54 specific, Fis family transcriptional regulator  49.79 
 
 
493 aa  459  9.999999999999999e-129  Xylella fastidiosa M23  Bacteria  normal  0.806395  n/a   
 
 
-
 
NC_010513  Xfasm12_2115  response regulator receiver protein  50 
 
 
493 aa  456  1e-127  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_1807  two component Fis family transcriptional regulator  51.43 
 
 
440 aa  437  1e-121  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal 
 
 
-
 
NC_013422  Hneap_2269  two component, sigma54 specific, transcriptional regulator, Fis family  46.81 
 
 
493 aa  431  1e-119  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_0364  two component, sigma54 specific, transcriptional regulator, Fis family  46.76 
 
 
451 aa  419  1e-116  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.48055 
 
 
-
 
NC_011761  AFE_0185  type IV fimbriae expression regulatory protein PilR, putative  46.53 
 
 
445 aa  417  9.999999999999999e-116  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.103259  n/a   
 
 
-
 
NC_007969  Pcryo_0675  two component, sigma54 specific, Fis family transcriptional regulator  54.85 
 
 
579 aa  415  1e-114  Psychrobacter cryohalolentis K5  Bacteria  normal  0.775979  normal 
 
 
-
 
NC_008825  Mpe_A3216  type IV pilus expression regulatory protein  43.37 
 
 
537 aa  410  1e-113  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.422678 
 
 
-
 
NC_010524  Lcho_0380  two component, sigma54 specific, Fis family transcriptional regulator  43.98 
 
 
522 aa  408  1.0000000000000001e-112  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0200588 
 
 
-
 
NC_008781  Pnap_3383  two component, sigma54 specific, Fis family transcriptional regulator  43.7 
 
 
475 aa  384  1e-105  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.542066  normal 
 
 
-
 
NC_010682  Rpic_3052  two component, sigma54 specific, transcriptional regulator, Fis family  43.16 
 
 
541 aa  380  1e-104  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_2642  two component, sigma54 specific, transcriptional regulator, Fis family  51.59 
 
 
542 aa  376  1e-103  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_1110  two component, sigma54 specific, Fis family transcriptional regulator  42.42 
 
 
480 aa  376  1e-103  Polaromonas sp. JS666  Bacteria  normal  0.0589584  normal 
 
 
-
 
NC_007973  Rmet_3090  Fis family transcriptional regulator  50 
 
 
560 aa  378  1e-103  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU1495  sigma-54 dependent DNA-binding response regulator  44.52 
 
 
458 aa  374  1e-102  Geobacter sulfurreducens PCA  Bacteria  normal  0.301103  n/a   
 
 
-
 
NC_003295  RSc2807  response regulator transcription regulator protein  51.84 
 
 
570 aa  372  1e-102  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.524986 
 
 
-
 
NC_007347  Reut_A2943  helix-turn-helix, Fis-type  50.65 
 
 
529 aa  374  1e-102  Ralstonia eutropha JMP134  Bacteria  normal  0.0374645  n/a   
 
 
-
 
NC_007517  Gmet_1397  two component, sigma54 specific, Fis family transcriptional regulator  43.98 
 
 
458 aa  373  1e-102  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_3345  two component, sigma54 specific, Fis family transcriptional regulator  42.33 
 
 
483 aa  373  1e-102  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_0516  two component, sigma54 specific, Fis family transcriptional regulator  42.31 
 
 
468 aa  372  1e-102  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.000971097  n/a   
 
 
-
 
NC_008782  Ajs_3630  two component, sigma54 specific, Fis family transcriptional regulator  41.08 
 
 
502 aa  370  1e-101  Acidovorax sp. JS42  Bacteria  normal  0.670707  normal 
 
 
-
 
NC_011992  Dtpsy_2940  two component, sigma54 specific, transcriptional regulator, Fis family  41.08 
 
 
502 aa  372  1e-101  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_1503  two component, sigma54 specific, Fis family transcriptional regulator  40.62 
 
 
513 aa  370  1e-101  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_0866  two component, sigma54 specific, Fis family transcriptional regulator  42.11 
 
 
496 aa  368  1e-100  Acidovorax citrulli AAC00-1  Bacteria  normal  0.555974  normal  0.133337 
 
 
-
 
NC_013440  Hoch_4153  two component, sigma54 specific, transcriptional regulator, Fis family  42.95 
 
 
466 aa  363  3e-99  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.11717 
 
 
-
 
NC_012791  Vapar_0958  two component, sigma54 specific, transcriptional regulator, Fis family  41.07 
 
 
513 aa  360  2e-98  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_1498  two component, sigma54 specific, Fis family transcriptional regulator  40.79 
 
 
500 aa  361  2e-98  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_2678  two component, sigma-54 specific, Fis family transcriptional regulator  41.9 
 
 
457 aa  353  2.9999999999999997e-96  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_1657  two component, sigma54 specific, transcriptional regulator, Fis family  41.15 
 
 
456 aa  352  8e-96  Geobacter lovleyi SZ  Bacteria  normal  0.0365007  n/a   
 
 
-
 
NC_007498  Pcar_2145  two component signal transduction response regulator  41.76 
 
 
492 aa  352  1e-95  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_2092  two component, sigma54 specific, Fis family transcriptional regulator  42.48 
 
 
462 aa  350  3e-95  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.131918 
 
 
-
 
NC_008609  Ppro_1655  two component, sigma54 specific, Fis family transcriptional regulator  39.96 
 
 
462 aa  350  3e-95  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.000025661  n/a   
 
 
-
 
NC_010814  Glov_3076  two component, sigma54 specific, transcriptional regulator, Fis family  40.17 
 
 
454 aa  348  1e-94  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_0812  two component, sigma54 specific, Fis family transcriptional regulator  41.56 
 
 
453 aa  346  5e-94  Geobacter metallireducens GS-15  Bacteria  normal  0.0257022  hitchhiker  0.00000328811 
 
 
-
 
NC_012918  GM21_1635  two component, sigma54 specific, transcriptional regulator, Fis family  41.24 
 
 
457 aa  346  6e-94  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_013223  Dret_0097  two component, sigma54 specific, transcriptional regulator, Fis family  40.26 
 
 
448 aa  342  5.999999999999999e-93  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_2591  two component, sigma54 specific, transcriptional regulator, Fis family  40.73 
 
 
457 aa  342  7e-93  Geobacter bemidjiensis Bem  Bacteria  normal  0.313706  n/a   
 
 
-
 
NC_012918  GM21_3903  two component, sigma54 specific, transcriptional regulator, Fis family  40.83 
 
 
455 aa  342  8e-93  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.000574971 
 
 
-
 
NC_007760  Adeh_1908  two component, sigma54 specific, Fis family transcriptional regulator  39.49 
 
 
473 aa  342  9e-93  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_3819  two component, sigma54 specific, transcriptional regulator, Fis family  40.17 
 
 
455 aa  340  2.9999999999999998e-92  Geobacter bemidjiensis Bem  Bacteria  normal  0.785821  n/a   
 
 
-
 
NC_013501  Rmar_1797  two component, sigma54 specific, transcriptional regulator, Fis family  39.48 
 
 
461 aa  340  2.9999999999999998e-92  Rhodothermus marinus DSM 4252  Bacteria  normal  0.774224  n/a   
 
 
-
 
NC_009483  Gura_3740  two component, sigma-54 specific, Fis family transcriptional regulator  42.36 
 
 
454 aa  340  4e-92  Geobacter uraniireducens Rf4  Bacteria  normal  0.0840186  n/a   
 
 
-
 
NC_002939  GSU1129  sigma-54 dependent DNA-binding response regulator  40.48 
 
 
453 aa  339  5e-92  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_008607  Ppro_3647  two component, sigma54 specific, Fis family transcriptional regulator  42.05 
 
 
451 aa  339  5e-92  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_1971  two component, sigma54 specific, transcriptional regulator, Fis family  39.07 
 
 
473 aa  339  7e-92  Anaeromyxobacter sp. K  Bacteria  normal  0.0887215  n/a   
 
 
-
 
NC_011891  A2cp1_2056  two component, sigma54 specific, transcriptional regulator, Fis family  39.07 
 
 
473 aa  339  7e-92  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.732718  n/a   
 
 
-
 
NC_007947  Mfla_0911  two component, sigma54 specific, Fis family transcriptional regulator  45.05 
 
 
456 aa  339  7e-92  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_1055  two component, sigma54 specific, Fis family transcriptional regulator  45.05 
 
 
456 aa  339  7e-92  Methylobacillus flagellatus KT  Bacteria  normal  0.523432  normal 
 
 
-
 
NC_010814  Glov_2158  two component, sigma54 specific, transcriptional regulator, Fis family  39.74 
 
 
453 aa  337  2.9999999999999997e-91  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_1698  two component, sigma54 specific, transcriptional regulator, Fis family  41.59 
 
 
457 aa  337  2.9999999999999997e-91  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.000000740904 
 
 
-
 
NC_013173  Dbac_2713  two component, sigma54 specific, transcriptional regulator, Fis family  40.09 
 
 
454 aa  335  7e-91  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_1588  two component, sigma54 specific, Fis family transcriptional regulator  40 
 
 
458 aa  335  7.999999999999999e-91  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.13799 
 
 
-
 
NC_011146  Gbem_2521  two component, sigma54 specific, transcriptional regulator, Fis family  41.16 
 
 
457 aa  335  1e-90  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2245  two component, sigma54 specific, transcriptional regulator, Fis family  40.39 
 
 
460 aa  335  1e-90  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_0626  two component, sigma54 specific, Fis family transcriptional regulator  41.13 
 
 
460 aa  335  1e-90  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_0671  two component, sigma54 specific, Fis family transcriptional regulator  40.31 
 
 
457 aa  334  2e-90  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.288415  normal 
 
 
-
 
NC_007498  Pcar_1994  two component signal transduction response regulator  39.75 
 
 
477 aa  334  3e-90  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_3407  two component, sigma54 specific, transcriptional regulator, Fis family  39.08 
 
 
458 aa  333  3e-90  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_013422  Hneap_2100  two component, sigma54 specific, transcriptional regulator, Fis family  41.5 
 
 
466 aa  333  4e-90  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_1951  two component, sigma54 specific, Fis family transcriptional regulator  37.93 
 
 
470 aa  333  5e-90  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.516267  normal 
 
 
-
 
NC_009483  Gura_0085  two component, sigma-54 specific, Fis family transcriptional regulator  40.65 
 
 
452 aa  333  5e-90  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_2826  two component, sigma54 specific, Fis family transcriptional regulator  41.05 
 
 
461 aa  332  7.000000000000001e-90  Marinobacter aquaeolei VT8  Bacteria  normal  0.244879  n/a   
 
 
-
 
NC_008609  Ppro_0984  two component, sigma54 specific, Fis family transcriptional regulator  38.54 
 
 
455 aa  332  8e-90  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_2001  two component, sigma54 specific, Fis family transcriptional regulator  39.91 
 
 
454 aa  331  2e-89  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_2510  two component, sigma54 specific, transcriptional regulator, Fis family  37.31 
 
 
472 aa  331  2e-89  Haliangium ochraceum DSM 14365  Bacteria  normal  0.0791346  normal 
 
 
-
 
NC_002939  GSU0372  sigma-54 dependent DNA-binding response regulator  39.14 
 
 
461 aa  330  4e-89  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_0970  two component, sigma54 specific, transcriptional regulator, Fis family  39.05 
 
 
459 aa  329  5.0000000000000004e-89  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.000694494  normal  0.524712 
 
 
-
 
NC_011146  Gbem_3413  two component, sigma54 specific, transcriptional regulator, Fis family  40.52 
 
 
453 aa  329  5.0000000000000004e-89  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_4192  two component, sigma-54 specific, Fis family transcriptional regulator  38.65 
 
 
454 aa  329  6e-89  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.00227342  n/a   
 
 
-
 
NC_008554  Sfum_3765  two component, sigma54 specific, Fis family transcriptional regulator  39.74 
 
 
463 aa  329  7e-89  Syntrophobacter fumaroxidans MPOB  Bacteria  decreased coverage  0.000821276  normal 
 
 
-
 
NC_009483  Gura_2914  two component, sigma-54 specific, Fis family transcriptional regulator  39.18 
 
 
459 aa  329  8e-89  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_011126  HY04AAS1_1332  two component, sigma54 specific, transcriptional regulator, Fis family  42.38 
 
 
439 aa  328  9e-89  Hydrogenobaculum sp. Y04AAS1  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_1430  acetoacetate metabolism regulatory protein AtoC  37.88 
 
 
461 aa  328  1.0000000000000001e-88  Escherichia coli ATCC 8739  Bacteria  normal  0.324678  hitchhiker  0.00137179 
 
 
-
 
NC_010730  SYO3AOP1_0590  two component, sigma54 specific, transcriptional regulator, Fis family  39.82 
 
 
440 aa  328  1.0000000000000001e-88  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_0173  two component, sigma54 specific, transcriptional regulator, Fis family  39.1 
 
 
463 aa  328  1.0000000000000001e-88  Ammonifex degensii KC4  Bacteria  normal  0.127235  n/a   
 
 
-
 
NC_011206  Lferr_2519  nitrogen metabolism transcriptional regulator, NtrC, Fis Family  38.84 
 
 
468 aa  328  1.0000000000000001e-88  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_011761  AFE_2901  nitrogen regulation protein NR(I)  38.84 
 
 
468 aa  328  1.0000000000000001e-88  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_1017  two component, sigma54 specific, transcriptional regulator, Fis family  39.21 
 
 
445 aa  327  2.0000000000000001e-88  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.246569  n/a   
 
 
-
 
NC_013173  Dbac_2666  two component, sigma54 specific, transcriptional regulator, Fis family  39.61 
 
 
459 aa  327  2.0000000000000001e-88  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1438  two component, sigma54 specific, transcriptional regulator, Fis family  37.88 
 
 
461 aa  327  3e-88  Escherichia coli DH1  Bacteria  normal  0.445705  n/a   
 
 
-
 
NC_012892  B21_02106  hypothetical protein  37.88 
 
 
461 aa  327  3e-88  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
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