More than 300 homologs were found in PanDaTox collection
for query gene M446_2799 on replicon NC_010511
Organism: Methylobacterium sp. 4-46



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010511  M446_2799  response regulator receiver protein  100 
 
 
132 aa  257  4e-68  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_0185  response regulator receiver protein  88.64 
 
 
132 aa  228  2e-59  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_5294  response regulator receiver protein  78.4 
 
 
130 aa  195  1.0000000000000001e-49  Methylobacterium sp. 4-46  Bacteria  normal  0.0717946  normal  0.338735 
 
 
-
 
NC_010505  Mrad2831_5658  response regulator receiver protein  76 
 
 
132 aa  194  4.0000000000000005e-49  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.483341  normal 
 
 
-
 
NC_013730  Slin_5022  response regulator receiver protein  55 
 
 
126 aa  125  2.0000000000000002e-28  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_1111  response regulator receiver protein  51.75 
 
 
123 aa  116  9.999999999999999e-26  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.0272953  normal  0.304596 
 
 
-
 
NC_013730  Slin_4603  response regulator receiver protein  48.62 
 
 
132 aa  95.9  2e-19  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_5657  adenylate/guanylate cyclase  44.35 
 
 
421 aa  94.4  4e-19  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.517681  normal 
 
 
-
 
NC_010511  M446_5293  adenylate/guanylate cyclase  43.55 
 
 
421 aa  91.3  4e-18  Methylobacterium sp. 4-46  Bacteria  normal  0.0545376  normal  0.227088 
 
 
-
 
NC_013037  Dfer_1110  adenylate/guanylate cyclase  38.46 
 
 
348 aa  90.9  5e-18  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.0224811  normal  0.236606 
 
 
-
 
NC_008312  Tery_0615  response regulator receiver sensor signal transduction histidine kinase  40.8 
 
 
395 aa  90.9  5e-18  Trichodesmium erythraeum IMS101  Bacteria  normal  hitchhiker  0.00858549 
 
 
-
 
NC_013730  Slin_5021  adenylate/guanylate cyclase  37.6 
 
 
348 aa  90.9  5e-18  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_2796  adenylate/guanylate cyclase  42.74 
 
 
447 aa  90.5  7e-18  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_2281  response regulator receiver protein  40.8 
 
 
128 aa  84.7  3e-16  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.498531 
 
 
-
 
NC_013730  Slin_6047  response regulator receiver sensor hybrid histidine kinase  39.5 
 
 
677 aa  81.6  0.000000000000003  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_2738  response regulator receiver domain-containing protein  37.9 
 
 
194 aa  81.6  0.000000000000003  Rhodoferax ferrireducens T118  Bacteria  hitchhiker  0.000186206  n/a   
 
 
-
 
NC_013730  Slin_4604  histidine kinase  36.59 
 
 
663 aa  81.3  0.000000000000004  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_4840  two-component response regulator PilR  42.24 
 
 
448 aa  79.7  0.00000000000001  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.43512  normal  0.760188 
 
 
-
 
NC_013730  Slin_1905  response regulator receiver sensor hybrid histidine kinase  33.06 
 
 
668 aa  77.8  0.00000000000005  Spirosoma linguale DSM 74  Bacteria  normal  0.0295515  normal  0.210974 
 
 
-
 
NC_011830  Dhaf_4841  response regulator receiver protein  41.46 
 
 
118 aa  77  0.00000000000007  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.202718  n/a   
 
 
-
 
NC_009439  Pmen_0965  two-component response regulator PilR  39.83 
 
 
446 aa  74.7  0.0000000000004  Pseudomonas mendocina ymp  Bacteria  normal  0.25964  normal 
 
 
-
 
NC_007298  Daro_1804  two component, sigma54 specific, Fis family transcriptional regulator  38.02 
 
 
469 aa  73.9  0.0000000000007  Dechloromonas aromatica RCB  Bacteria  normal  0.0358984  normal  0.379225 
 
 
-
 
NC_007908  Rfer_2735  response regulator receiver domain-containing protein  34.26 
 
 
242 aa  73.6  0.0000000000009  Rhodoferax ferrireducens T118  Bacteria  normal  0.284606  n/a   
 
 
-
 
NC_004578  PSPTO_0823  type 4 fimbriae expression regulatory protein pilR  37.19 
 
 
446 aa  72.8  0.000000000001  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_0911  two component, sigma54 specific, Fis family transcriptional regulator  37.5 
 
 
456 aa  72.8  0.000000000002  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_1055  two component, sigma54 specific, Fis family transcriptional regulator  37.5 
 
 
456 aa  72.8  0.000000000002  Methylobacillus flagellatus KT  Bacteria  normal  0.523432  normal 
 
 
-
 
NC_007005  Psyr_0722  helix-turn-helix, Fis-type  37.19 
 
 
445 aa  72  0.000000000003  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_3002  two component transcriptional regulator  39.83 
 
 
230 aa  72  0.000000000003  Acidovorax citrulli AAC00-1  Bacteria  normal  0.67465  normal  0.369251 
 
 
-
 
NC_013501  Rmar_0513  two component transcriptional regulator, winged helix family  38.14 
 
 
228 aa  72  0.000000000003  Rhodothermus marinus DSM 4252  Bacteria  normal  0.985837  n/a   
 
 
-
 
NC_002936  DET1294  DNA-binding response regulator  34.58 
 
 
180 aa  70.5  0.000000000007  Dehalococcoides ethenogenes 195  Bacteria  unclonable  0.00000125664  n/a   
 
 
-
 
NC_007298  Daro_2585  helix-turn-helix, Fis-type  33.07 
 
 
468 aa  70.5  0.000000000007  Dechloromonas aromatica RCB  Bacteria  normal  0.023304  normal  0.859939 
 
 
-
 
NC_010814  Glov_3076  two component, sigma54 specific, transcriptional regulator, Fis family  35.43 
 
 
454 aa  70.5  0.000000000007  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_5187  two-component response regulator PilR  38.14 
 
 
445 aa  70.5  0.000000000007  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_60260  two-component response regulator PilR  38.14 
 
 
445 aa  70.5  0.000000000007  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.000000831057 
 
 
-
 
NC_009972  Haur_0852  GAF sensor hybrid histidine kinase  37.61 
 
 
1055 aa  70.1  0.000000000008  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_3728  response regulator receiver protein  43.48 
 
 
117 aa  70.5  0.000000000008  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_4371  two component, sigma54 specific, transcriptional regulator, Fis family  37.1 
 
 
451 aa  69.7  0.00000000001  Pseudomonas putida KT2440  Bacteria  normal  0.109269  normal  0.91149 
 
 
-
 
NC_009972  Haur_2161  adenylate/guanylate cyclase with GAF sensor(s)  36.3 
 
 
1020 aa  70.1  0.00000000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.0428251  n/a   
 
 
-
 
NC_008146  Mmcs_3239  response regulator receiver/unknown domain-containing protein  43.33 
 
 
220 aa  69.7  0.00000000001  Mycobacterium sp. MCS  Bacteria  normal  0.926137  n/a   
 
 
-
 
NC_008705  Mkms_3301  response regulator receiver/unknown domain-containing protein  43.33 
 
 
220 aa  69.7  0.00000000001  Mycobacterium sp. KMS  Bacteria  normal  normal  0.0147948 
 
 
-
 
NC_002620  TC0753  sigma-54 dependent response regulator  34.51 
 
 
387 aa  68.9  0.00000000002  Chlamydia muridarum Nigg  Bacteria  normal  n/a   
 
 
-
 
NC_013158  Huta_0496  multi-sensor signal transduction histidine kinase  39.81 
 
 
896 aa  68.9  0.00000000002  Halorhabdus utahensis DSM 12940  Archaea  normal  n/a   
 
 
-
 
NC_009077  Mjls_3250  response regulator receiver/unknown domain-containing protein  43.33 
 
 
220 aa  69.3  0.00000000002  Mycobacterium sp. JLS  Bacteria  normal  0.237703  normal 
 
 
-
 
NC_009483  Gura_4220  response regulator receiver protein  35.51 
 
 
120 aa  68.9  0.00000000002  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_4621  adenylate/guanylate cyclase  32.79 
 
 
687 aa  68.9  0.00000000002  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.828122 
 
 
-
 
NC_008554  Sfum_0821  response regulator receiver modulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase  35.51 
 
 
1139 aa  68.9  0.00000000002  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.187038 
 
 
-
 
NC_013223  Dret_0097  two component, sigma54 specific, transcriptional regulator, Fis family  34.86 
 
 
448 aa  69.3  0.00000000002  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_0700  two component, sigma54 specific, transcriptional regulator, Fis family  33.08 
 
 
448 aa  68.6  0.00000000003  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.219431 
 
 
-
 
NC_010322  PputGB1_3932  two component, sigma54 specific, Fis family transcriptional regulator  36.29 
 
 
451 aa  68.6  0.00000000003  Pseudomonas putida GB-1  Bacteria  normal  0.215439  normal 
 
 
-
 
NC_007484  Noc_0847  two component diguanylate cyclase  37.7 
 
 
327 aa  68.6  0.00000000003  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_0922  two component, sigma54 specific, Fis family transcriptional regulator  38.6 
 
 
462 aa  68.6  0.00000000003  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.554455  n/a   
 
 
-
 
NC_008346  Swol_2412  response regulator receiver protein  32.77 
 
 
123 aa  68.6  0.00000000003  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  0.18168  n/a   
 
 
-
 
NC_009675  Anae109_0965  two component, sigma54 specific, Fis family transcriptional regulator  37.72 
 
 
466 aa  68.6  0.00000000003  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.605384  normal 
 
 
-
 
NC_013173  Dbac_0387  response regulator receiver modulated metal dependent phosphohydrolase  36.22 
 
 
487 aa  68.6  0.00000000003  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.0207452  n/a   
 
 
-
 
NC_011206  Lferr_0029  two component, sigma54 specific, transcriptional regulator, Fis family  36.52 
 
 
455 aa  68.2  0.00000000004  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.59486  normal  0.125276 
 
 
-
 
NC_011145  AnaeK_0978  two component, sigma54 specific, transcriptional regulator, Fis family  38.6 
 
 
466 aa  68.2  0.00000000004  Anaeromyxobacter sp. K  Bacteria  normal  0.0932912  n/a   
 
 
-
 
NC_014212  Mesil_2980  response regulator receiver protein  36.89 
 
 
138 aa  68.2  0.00000000004  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_011761  AFE_0027  sigma-54 dependent transcriptional regulator/response regulator  36.52 
 
 
455 aa  68.2  0.00000000004  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_2959  two component, sigma54 specific, transcriptional regulator, Fis family  31.75 
 
 
513 aa  67.8  0.00000000005  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A0275  helix-turn-helix, Fis-type  35.38 
 
 
441 aa  67.8  0.00000000005  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_1192  nitrogen metabolism transcriptional regulator, NtrC, Fis family  37.8 
 
 
511 aa  67.8  0.00000000005  Acidovorax sp. JS42  Bacteria  normal  0.616523  normal 
 
 
-
 
NC_007517  Gmet_2924  two component, sigma54 specific, Fis family transcriptional regulator  33.06 
 
 
470 aa  67.8  0.00000000005  Geobacter metallireducens GS-15  Bacteria  normal  0.777319  hitchhiker  0.0000000000564278 
 
 
-
 
NC_011992  Dtpsy_1112  nitrogen metabolism transcriptional regulator, NtrC, Fis Family  37.8 
 
 
511 aa  67.8  0.00000000005  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_2618  two component, sigma54 specific, transcriptional regulator, Fis family  37.07 
 
 
453 aa  67.8  0.00000000005  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.153552  n/a   
 
 
-
 
NC_013552  DhcVS_1078  DNA-binding response regulator  31.78 
 
 
180 aa  67.8  0.00000000005  Dehalococcoides sp. VS  Bacteria  unclonable  0.00000000000063084  n/a   
 
 
-
 
NC_011891  A2cp1_0976  two component, sigma54 specific, transcriptional regulator, Fis family  38.6 
 
 
1079 aa  67.8  0.00000000005  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_2506  histidine kinase  35.54 
 
 
538 aa  67.8  0.00000000005  Pseudomonas putida GB-1  Bacteria  normal  0.971833  normal 
 
 
-
 
NC_011769  DvMF_1461  two component, sigma54 specific, transcriptional regulator, Fis family  37.6 
 
 
491 aa  67.4  0.00000000006  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.750458 
 
 
-
 
NC_007512  Plut_0344  two component Fis family transcriptional regulator  34.81 
 
 
452 aa  67.4  0.00000000006  Chlorobium luteolum DSM 273  Bacteria  normal  0.0882822  normal  0.355114 
 
 
-
 
NC_010501  PputW619_3696  two component, sigma54 specific, Fis family transcriptional regulator  36.29 
 
 
458 aa  67.4  0.00000000006  Pseudomonas putida W619  Bacteria  normal  0.12736  normal 
 
 
-
 
NC_009512  Pput_1496  two component, sigma54 specific, Fis family transcriptional regulator  35.48 
 
 
451 aa  67.4  0.00000000006  Pseudomonas putida F1  Bacteria  normal  0.190196  normal  0.699272 
 
 
-
 
NC_008340  Mlg_0258  two component, sigma54 specific, Fis family transcriptional regulator  34.71 
 
 
451 aa  67.4  0.00000000006  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.667822  normal 
 
 
-
 
NC_008726  Mvan_3504  response regulator receiver/unknown domain-containing protein  41.88 
 
 
221 aa  67.4  0.00000000006  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.0894605 
 
 
-
 
NC_009455  DehaBAV1_1106  response regulator receiver protein  31.78 
 
 
180 aa  67.4  0.00000000006  Dehalococcoides sp. BAV1  Bacteria  normal  0.0674112  n/a   
 
 
-
 
NC_010814  Glov_1694  two component, sigma54 specific, transcriptional regulator, Fis family  29.46 
 
 
472 aa  67.4  0.00000000007  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_2240  two component, sigma54 specific, Fis family transcriptional regulator  36.72 
 
 
465 aa  67.4  0.00000000007  Jannaschia sp. CCS1  Bacteria  normal  0.261318  normal 
 
 
-
 
NC_013173  Dbac_0628  two component, sigma54 specific, transcriptional regulator, Fis family  37.88 
 
 
446 aa  67.4  0.00000000007  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1891  response regulator  34.88 
 
 
379 aa  67  0.00000000008  Geobacter sulfurreducens PCA  Bacteria  normal  0.750204  n/a   
 
 
-
 
NC_013440  Hoch_6827  response regulator receiver protein  33.6 
 
 
389 aa  67  0.00000000008  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_1999  two component, sigma54 specific, Fis family transcriptional regulator  36.67 
 
 
481 aa  67  0.00000000008  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_3651  GAF sensor hybrid histidine kinase  39.45 
 
 
727 aa  67  0.00000000009  Pseudomonas putida KT2440  Bacteria  normal  normal  0.125923 
 
 
-
 
NC_007912  Sde_2555  two-component response regulator PilR  32.76 
 
 
459 aa  66.6  0.00000000009  Saccharophagus degradans 2-40  Bacteria  normal  0.822177  normal  0.0698623 
 
 
-
 
NC_011901  Tgr7_0200  two component, sigma54 specific, transcriptional regulator, Fis family  39.34 
 
 
458 aa  66.2  0.0000000001  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.162426  n/a   
 
 
-
 
NC_002936  DET0624  response regulator  33.06 
 
 
334 aa  66.2  0.0000000001  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_1545  two component LuxR family transcriptional regulator  36.52 
 
 
219 aa  66.2  0.0000000001  Shewanella loihica PV-4  Bacteria  normal  0.505974  normal 
 
 
-
 
NC_009512  Pput_2079  GAF sensor hybrid histidine kinase  39.45 
 
 
727 aa  66.6  0.0000000001  Pseudomonas putida F1  Bacteria  normal  normal  0.79077 
 
 
-
 
NC_007298  Daro_3758  helix-turn-helix, Fis-type:nitrogen regulation protein NR(I)  39.45 
 
 
476 aa  66.2  0.0000000001  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.349567 
 
 
-
 
NC_013173  Dbac_1417  response regulator receiver protein  36.43 
 
 
120 aa  66.2  0.0000000001  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.212789  n/a   
 
 
-
 
NC_007517  Gmet_2302  response regulator receiver domain-containing protein  41.73 
 
 
127 aa  66.2  0.0000000001  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_1114  response regulator receiver modulated serine phosphatase  38.76 
 
 
391 aa  66.2  0.0000000001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_007519  Dde_3715  multi-sensor signal transduction histidine kinase  37.4 
 
 
653 aa  66.2  0.0000000001  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_009379  Pnuc_1253  nitrogen metabolism transcriptional regulator, NtrC, Fis family  36.7 
 
 
484 aa  66.6  0.0000000001  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  decreased coverage  0.000517304  n/a   
 
 
-
 
NC_009654  Mmwyl1_4419  two component, sigma54 specific, Fis family transcriptional regulator  33.62 
 
 
448 aa  66.6  0.0000000001  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_2685  two component, sigma54 specific, Fis family transcriptional regulator  37.61 
 
 
425 aa  66.2  0.0000000001  Shewanella sp. MR-4  Bacteria  normal  0.501083  normal  0.0990314 
 
 
-
 
NC_009972  Haur_3092  response regulator receiver protein  38.79 
 
 
128 aa  66.2  0.0000000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.0109887  n/a   
 
 
-
 
NC_009656  PSPA7_5859  two-component response regulator NtrC  36.61 
 
 
476 aa  66.6  0.0000000001  Pseudomonas aeruginosa PA7  Bacteria  normal  0.421071  n/a   
 
 
-
 
NC_013223  Dret_0970  two component, sigma54 specific, transcriptional regulator, Fis family  35.54 
 
 
473 aa  66.2  0.0000000001  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0157817  hitchhiker  0.00000223455 
 
 
-
 
NC_008700  Sama_2076  response regulator receiver protein  35.65 
 
 
238 aa  66.2  0.0000000001  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_3177  adenylate/guanylate cyclase with GAF and PAS/PAC sensors  34.88 
 
 
971 aa  66.2  0.0000000001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_1756  two component, sigma54 specific, Fis family transcriptional regulator  34.45 
 
 
450 aa  66.6  0.0000000001  Shewanella pealeana ATCC 700345  Bacteria  normal  0.562134  n/a   
 
 
-
 
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