| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1114 |
|---|
| Symbol | |
|---|
| ID | 5538580 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 1444327 |
|---|
| End bp | 1445502 |
|---|
| Gene Length | 1176 bp |
|---|
| Protein Length | 391 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640893248 |
|---|
| Product | response regulator receiver modulated serine phosphatase |
|---|
| Protein accession | YP_001431231 |
|---|
| Protein GI | 156741102 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAACGATT TGTTCGAGCA GATCAGCGGA CAGACGCCTT CTGTGCGCCA CATTCTGGTG
GTCGATGACG ATCCCGACAT CAATCGGCTG CTGCGCGCGC GTCTTACCGC GCGCGGGTAC
GATGTTTCGA CCGCTGCCAG CGGTGAAGAG GCGCTGACGC TGCTCGCCGA TTCACCCGCA
GATGTGATCT TTCTCGATAT TTCGTTGCCC GGTATGAACG GGCTGCAAAC GCTGGCGGAG
GTGCGACAGC GCAGGTTGGA TGCAGCCGTG ATCATGACCA CAGCGTTCGG TTCCGAGCAA
ATTGCGGTCG AGGCGTTACG CCAGGGCGCC GATGACTATC TGCGCAAACC GTTCGAGTCG
GACGAGTTTC GTCGGGTGCT GGAACGCACC GTCCAGCGTC TGGAACTCGA ACGCCAGAAT
CGCGTGTTGC GCCAACAACT CGAAGCGCAT CATCGCCGCC TGTTGAGCGA AATGGCGCGC
GCCGCCGAGG TGCAGGCGCG CCTGTTGCCG CAAATGGCGC CGGTGCTGCC GGGTTTTCAA
CTCGCTGCCG AGTGCATCCC CGCCCGCGAT GTTGGCGGTG ATTTCTACGA CTGGCAGCAA
CCGGCGCCGC ATGTGCTCAG TTTCTGGTTG TGCGATGTGA TGGGGAAAGG GCTGGATGCA
GCACTGCTGA TGGCGACCGT GCGCGCCGTG ATGCGCGCTG TTGTGCGGAG CAGCCCGCCT
GCCGAGGCGA TGCGCTATGT GGCTGCCGCA CTGAACGATG ACCTGATCCA ATCAGGACGG
TTCGTGACCC TTTTCCTGGC GCAACTCGAT GCTGGCAGTG GACGACTCGC CTTCATCGAC
GCCGGTCATG GGCTGGCATT CGTGCGGCGC GCCAATGGCA GCGTCGAAAC GTTCGATACG
CCGCGCGGAT TACCACTTGG CATCCTGCCA TATGAACAGT ATGATCAGCG CGAGGTGGTG
ATGAATCCAG GCGATGCGCT CGTTGTATAT AGCGATGGTC TGATTGATGC GCGCGTTGAT
CTCAATCTGA CGCCGCAAGC GCTGGCGGAT CAGTTGTGCG GCGCTGCCAG CGCTCTGGCA
ATGCTCGACC GCCTCGTGAC GCTGCTGGCG CCGGTACAGA CGCCGCCGGA CGATATGACG
TTGCTGGTGC TGTATCGGAA GACGGATCAG GGTTGA
|
|---|
| Protein sequence | MNDLFEQISG QTPSVRHILV VDDDPDINRL LRARLTARGY DVSTAASGEE ALTLLADSPA
DVIFLDISLP GMNGLQTLAE VRQRRLDAAV IMTTAFGSEQ IAVEALRQGA DDYLRKPFES
DEFRRVLERT VQRLELERQN RVLRQQLEAH HRRLLSEMAR AAEVQARLLP QMAPVLPGFQ
LAAECIPARD VGGDFYDWQQ PAPHVLSFWL CDVMGKGLDA ALLMATVRAV MRAVVRSSPP
AEAMRYVAAA LNDDLIQSGR FVTLFLAQLD AGSGRLAFID AGHGLAFVRR ANGSVETFDT
PRGLPLGILP YEQYDQREVV MNPGDALVVY SDGLIDARVD LNLTPQALAD QLCGAASALA
MLDRLVTLLA PVQTPPDDMT LLVLYRKTDQ G
|
|---|
| |