| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1253 |
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| Symbol | |
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| ID | 5053103 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | - |
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| Start bp | 1317826 |
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| End bp | 1319280 |
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| Gene Length | 1455 bp |
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| Protein Length | 484 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640471424 |
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| Product | nitrogen metabolism transcriptional regulator, NtrC, Fis family |
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| Protein accession | YP_001156031 |
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| Protein GI | 145589434 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR01818] nitrogen regulation protein NR(I) |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.000517304 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACCAA TTTGGATCGT CGACGATGAC CAATCTATTC GTTGGGTTTT AGAAAAGGCT
TTAGCGCGAG AGAATATTCC GCATAAGAGC TTTTCTAACC CAAATGATGT GCTTAATGCC
TTGGAAAAAG AAACCCCACA GGTACTGATT TCAGATATTC GTATGCCTCG CGGGAATGGC
TTGGATTTGC TGCAGCACGT TAAAGCTAGC CACCCACAAT TACCAGTCAT CATCATGACT
GCGTACTCCG ATTTGGATTC GGCTGTCTCT TCCTTTCAGG GTGGTGCATT TGAATACCTC
ACTAAACCCT TTGATGTAGA AAAAGCAGTT GAGCTAATTC ATCGTGCAGT AGAGCAGGGT
ATTCGTAGTG AGTCAGGCTC CAAGGAAATG GCCGGTTTTA GGTTAAATGA CGCAGAGATT
ATTGGCCAAG CACCTGCGAT GCAAGAAATA TTTCGCGCTA TTGGCCGCTT AGCGCAGTCT
CATGCCACCG TATTAATTAC CGGTGAGTCT GGGACTGGGA AAGAATTGAT TGCACATGCT
TTGCATAAAC ACAGCCCGCG CGCTAAAGGT CCTTTTGTTT CATTGAGTAC ATCAGCAGTA
CCAAAAGATT TGCTTGAGTC TGAATTATTC GGACATGAGC GTGGTGCCTT CCCCGGTGCC
CAAGCTTTAC GTCGTGGTCG CTTTGAGCAG GCTGATGGTG GCACACTATT TTTAGGTGAG
GTTGGTGACC TCCCATTTGA TTTGCAAACA AGACTCTTGC GCGTTTTAAC TGATGGTCAT
TTCTATCGCA TTGGCGGTCA CGATCCTATT AAGGCAAACG TGCGCATTAT TGCCTCGACA
CATCAAAACC TAGAGAGTCG TGTTGCTGCA GGTTTATTCC GGGAAGATTT ATTACATCGC
TTGAATGTCA TTCGCCTAAG AATGCCATCG TTGCGTGAGC GTAATGAGGA TATTCCCATG
TTGGCAAGGC ATTTTATGCT GGCATGCGCT AAATCTTTGG GTGTAGAACC TAAGAAATTA
TCAGACGAGG TTTTGAAAGA GATGAGCGCC ATGCCTTTCT CTGGAAATGT ACGTCAACTG
GAAAATTTAT GCCATTGGCT AACGGTGATG ACACCAGCTA ATATCATTGG CTTGAGCGAT
TTACCGGCAG ATATTGTTGC GCAGGCTAGC GAATTACCTA TCGCTACATC GCAGGGTGAA
TCTTCAGTTG GCGCTACAGT GGTTAGCAAG ACTGCCCCTG GTGATTGGGA AGCGGGTCTT
GGTCGTTTGG CTGTCAAAAT GCTTCAGGAT GGCGATAAAG AGGTTTTCGA TGCTTTATGT
TCGCGTTTTG AAAAAGCCGT ATTGCTAGCA GCTCTAGAGG TTACTCGTGG CCGTCGAGTC
GAGGCGGCTC AGCGATTAGG TATCGGTCGC AATACCATCA CACGAAAATT ACAGGAATTG
GGGATAGATG ACTGA
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| Protein sequence | MKPIWIVDDD QSIRWVLEKA LARENIPHKS FSNPNDVLNA LEKETPQVLI SDIRMPRGNG
LDLLQHVKAS HPQLPVIIMT AYSDLDSAVS SFQGGAFEYL TKPFDVEKAV ELIHRAVEQG
IRSESGSKEM AGFRLNDAEI IGQAPAMQEI FRAIGRLAQS HATVLITGES GTGKELIAHA
LHKHSPRAKG PFVSLSTSAV PKDLLESELF GHERGAFPGA QALRRGRFEQ ADGGTLFLGE
VGDLPFDLQT RLLRVLTDGH FYRIGGHDPI KANVRIIAST HQNLESRVAA GLFREDLLHR
LNVIRLRMPS LRERNEDIPM LARHFMLACA KSLGVEPKKL SDEVLKEMSA MPFSGNVRQL
ENLCHWLTVM TPANIIGLSD LPADIVAQAS ELPIATSQGE SSVGATVVSK TAPGDWEAGL
GRLAVKMLQD GDKEVFDALC SRFEKAVLLA ALEVTRGRRV EAAQRLGIGR NTITRKLQEL
GIDD
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