| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Huta_0496 |
|---|
| Symbol | |
|---|
| ID | 8382763 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhabdus utahensis DSM 12940 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_013158 |
|---|
| Strand | + |
|---|
| Start bp | 499864 |
|---|
| End bp | 502554 |
|---|
| Gene Length | 2691 bp |
|---|
| Protein Length | 896 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644971558 |
|---|
| Product | multi-sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_003129416 |
|---|
| Protein GI | 257051583 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase
[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGCAAGC CGATCCGGGT GCTCCACGTC GACGACGAAC CCGACTTCCT CGACCTCGTC
GCGACGATGC TCGAAGACGA GGCCGATCAG TTCGTCGTCG AACGGGCGAC CACCGCCAAC
GAGGGGCTCG GACGGCTCGA CGAGACGATC GATTGCGTCG TCAGCGACTA CGAGATGCCC
GGGCTGGACG GGCTCGACCT GCTGGCTGCC GTCCGCGAGG AGTACCCGGA TCTGCCCTTC
ATCCTTTATA CCGCCCGTGG GTCCGAGTCC ATCGCGAGCG AGGCCGTTTC CGCCGGTGTC
ACCGACTACC TCGAAAAGGC GGGTGGGACC GAACAGTACA CCGTCCTCGC CAACCGGATC
GAGAACGCAG TGGGACAGTA CCGGGCCAGC AAGCGCGTGG ACACCCTCGA TCGGATCAGG
AGTACCGTCC GGGACGTCAA CCAGGAACTC GTCCGGTCGC GAAGCCAGGC CGAACTCGAA
AGCCGGATCT GTGAGATCAT CACGGACGGA CCGCCATACG AGTTCGCGTG GATCGGCGGG
CGCGACGCGG AAGCTGGGAC TGTCGTCCCG CGGGCGAGCG GTGGGGACGG TGACGGCTAT
CTGGCGGAGG TCTCGATCAC ACTCGACGAG GGTCCGACGG GGGGCGGCCC GACTGTCAGA
GCGCTCGCTG CGGACGACCT CGTCGTGACC CAGTCGATCG AGGACAGCGA GGCGTTCGAA
CCCTGGCGTG AGGCGGCCCT GGAGCGCGGT TTTCAGGCCA GTGCTGCCGT CCCGCTCTCC
TTCGAGGATC GTCAGTACGG CGTGTTGAAC GTCTACAGTG CCGAGCGGGA CCCCTTCGAC
AAGACCGAGA AGAACCTGCT TCGCGAACTC GGCGGCGACA TCGGCCACGC ACTCCACCGC
ATCGAACAGG AGCGTCAGTA CCGCCGGCTC TTCGAGGAGT CGATCAACGC GATCGCCTTC
CACGAGATCG TGACCGACGA GGACGGCGAC CCGGTCGATT ACGTCTTCCT GGACGCCAAC
GACGCCTTCG AGGACGCGAC CGGGCTCGAT CCGGCGGAGA TCATCGGCAA GCGCGTGACC
GAGGTCCTGC CGGATCTCGA CCGGACGTTC ATCGAGACCT ACGGGGAGGT CGCACTCGAG
GGCGAGCCGA CTGCGTTCGA ATACGACGCG GAGTCTCTCG GACGGCGCTA TTCGATCACC
GCGTTCCCGC TGGGAGAGGG GCGGTTCGTC ACGACGTTCT TCGACGTCAC CGAACAGCAC
GAACAGGAGC GGGAGCTGAC CGAGACCAAC CGGTTGCTGT CAGCGCTCCT GGAGCACCTT
CCCTTCGGCG TCCTCGTCGA GGGGAACGAC CGCGAGATCA TGGCCGCAAA CCCCGCGTTC
TGTGACTGCT TCGATATCGG GATGGCGTGT GACCAGCTCG TCGGGACGGA CTGTGCGAAG
GCAGCCGAGG ACGTCGCCGA GCAGTTCGCC GACCCCCAGG GGTTCATCGA GCGGATCGAG
ACGCTTCTCG ACCAGCGTGA ACCGGTCATC GGCGAGGAAC TCCAGCTGGC CGACGGACGG
ACCCTCTCGC GGGGCTACGT ACCGTTCTCC CTGGCGGACG GCGAGGGGAA CCTCTGGCTG
TACCGGGACG TGACAGACCG CAAGGATCGC GAACGGGAAC TCCGGACGAT GAACGAACAG
CTGGCGACGG TCCGCGATCA GCTCGAGCTC GCCCTCGAAA CGACGAACGC CTGCACCTTC
GACTGGCGGC CGGCGGACCA GGAGATCCAG TGGTATCCGA CCTTCGAGGC GGTCTTCGGC
ATCGACGCGT CGGCAGTCGA GCCGATCTTC GACGCCTACT TCGAGATGGT GCCAGCCGAT
CACCGCGAGC GGGTCAGGAC CGCCATCCAG GCGGCGATCG ACGATGGAAC TGGCTACGAT
CTCACCTACC CGGTCGAACC CGGCGGGGAG CGGATCTGGG TCCGCGAGCA GGCCCAGGTC
ATGACCGACG AGGGGGAGCC GCGGGTTGTC GGGACGATCA CTGACGTGAC CGAGCTCACG
GAGTACGAGC GTCGGCTCGA ACGCCAGAAC GAACGCTTAG ACGAGTTCGC CGAGGTCATC
TCACACGACC TCCGGAACCC GCTGAACGTC GCCTTCGGTC GGGCGGAGCT CCTCGCCGAG
GACGACGAGA GTCCACACAC CGGGCCGCTG CTCGACGCGC TCGAACGGAT GGAGGACATC
GTCGGCAACA CGCTGACGCT GGCCCGCCAG GGCGATACGG TGGGAGAGAC CGAACCGGTC
CCGGTCGAAC CGGTCGTCGA GGAGTGTGCG GAGATGATCG ATAGCGAGAG CGCGACGGTC
GATGTCGCCG AGGAGTTCCG GATCCGGGGT GATCGCGACC GGATCAGACA CGTCTTCGAG
AACCTGTTTT CGAACGCGGT CGAGCACTCC GCGGAAGATG GTGGGGACGT CACCGTCCGG
ATCGACCGAA TCGACGACCA CGGCTTCTAC GTCGCCGACG ACGGCCAGGG CATCCCGGCC
GACGAGCGCG CGGCGATCTT CGATCCGGGC TTCACCACGA CGAGGGAGGG GACGGGACTC
GGCCTCACGA TCGTCGAGCG GATCGCCGAG GCCCACGACT GGGACGTCTC GGTCGCGGAG
AGTCGCGAGG GCGGCGCGTG CTTCGAGTTT ACCGGTGTCG ACATTACCTG A
|
|---|
| Protein sequence | MGKPIRVLHV DDEPDFLDLV ATMLEDEADQ FVVERATTAN EGLGRLDETI DCVVSDYEMP
GLDGLDLLAA VREEYPDLPF ILYTARGSES IASEAVSAGV TDYLEKAGGT EQYTVLANRI
ENAVGQYRAS KRVDTLDRIR STVRDVNQEL VRSRSQAELE SRICEIITDG PPYEFAWIGG
RDAEAGTVVP RASGGDGDGY LAEVSITLDE GPTGGGPTVR ALAADDLVVT QSIEDSEAFE
PWREAALERG FQASAAVPLS FEDRQYGVLN VYSAERDPFD KTEKNLLREL GGDIGHALHR
IEQERQYRRL FEESINAIAF HEIVTDEDGD PVDYVFLDAN DAFEDATGLD PAEIIGKRVT
EVLPDLDRTF IETYGEVALE GEPTAFEYDA ESLGRRYSIT AFPLGEGRFV TTFFDVTEQH
EQERELTETN RLLSALLEHL PFGVLVEGND REIMAANPAF CDCFDIGMAC DQLVGTDCAK
AAEDVAEQFA DPQGFIERIE TLLDQREPVI GEELQLADGR TLSRGYVPFS LADGEGNLWL
YRDVTDRKDR ERELRTMNEQ LATVRDQLEL ALETTNACTF DWRPADQEIQ WYPTFEAVFG
IDASAVEPIF DAYFEMVPAD HRERVRTAIQ AAIDDGTGYD LTYPVEPGGE RIWVREQAQV
MTDEGEPRVV GTITDVTELT EYERRLERQN ERLDEFAEVI SHDLRNPLNV AFGRAELLAE
DDESPHTGPL LDALERMEDI VGNTLTLARQ GDTVGETEPV PVEPVVEECA EMIDSESATV
DVAEEFRIRG DRDRIRHVFE NLFSNAVEHS AEDGGDVTVR IDRIDDHGFY VADDGQGIPA
DERAAIFDPG FTTTREGTGL GLTIVERIAE AHDWDVSVAE SREGGACFEF TGVDIT
|
|---|
| |