More than 300 homologs were found in PanDaTox collection
for query gene BBta_0225 on replicon NC_009485
Organism: Bradyrhizobium sp. BTAi1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009485  BBta_0225  putative 3-oxoacyl-(acyl-carrier-protein) reductase 1 (fabG1)  100 
 
 
252 aa  513  1.0000000000000001e-145  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.157918  normal 
 
 
-
 
NC_007958  RPD_0484  short-chain dehydrogenase/reductase SDR  80.49 
 
 
249 aa  377  1e-104  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_0330  Short-chain dehydrogenase/reductase SDR  79.25 
 
 
249 aa  367  1e-101  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_5635  short-chain dehydrogenase/reductase SDR  53.53 
 
 
252 aa  266  2.9999999999999995e-70  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_4023  short-chain dehydrogenase/reductase SDR  55.6 
 
 
252 aa  265  8e-70  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.0914697  normal  0.657506 
 
 
-
 
NC_013172  Bfae_25000  short-chain alcohol dehydrogenase  45.92 
 
 
241 aa  196  4.0000000000000005e-49  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_3321  short-chain dehydrogenase/reductase SDR  43.59 
 
 
252 aa  191  1e-47  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.107634  n/a   
 
 
-
 
NC_007953  Bxe_C0297  putative short-chain dehydrogenase/reductase  41.6 
 
 
256 aa  191  1e-47  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_0797  short-chain dehydrogenase/reductase SDR  47.86 
 
 
238 aa  177  2e-43  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.180184 
 
 
-
 
NC_012791  Vapar_0808  short-chain dehydrogenase/reductase SDR  36.97 
 
 
252 aa  149  6e-35  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_4381  short-chain dehydrogenase/reductase SDR  37.25 
 
 
248 aa  147  1.0000000000000001e-34  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.297747  hitchhiker  0.00314525 
 
 
-
 
NC_013730  Slin_2186  short-chain dehydrogenase/reductase SDR  35.12 
 
 
248 aa  143  3e-33  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.0361624 
 
 
-
 
NC_010085  Nmar_1786  short-chain dehydrogenase/reductase SDR  36.63 
 
 
246 aa  142  4e-33  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal 
 
 
-
 
NC_009621  Smed_5216  short-chain dehydrogenase/reductase SDR  37.92 
 
 
249 aa  140  1.9999999999999998e-32  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_1007  short-chain dehydrogenase/reductase SDR  34.58 
 
 
245 aa  139  3e-32  Sphingomonas wittichii RW1  Bacteria  normal  0.553727  normal  0.0273902 
 
 
-
 
NC_007413  Ava_2536  short chain dehydrogenase  35.44 
 
 
241 aa  140  3e-32  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_0676  short-chain dehydrogenase/reductase SDR  36.29 
 
 
254 aa  139  6e-32  Frankia sp. CcI3  Bacteria  hitchhiker  0.00917144  normal  0.0792915 
 
 
-
 
NC_012848  Rleg_4853  short-chain dehydrogenase/reductase SDR  34.98 
 
 
248 aa  138  1e-31  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.154391  normal  0.241568 
 
 
-
 
NC_007347  Reut_A1762  Short-chain dehydrogenase/reductase SDR  40.4 
 
 
252 aa  137  1e-31  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_1241  short-chain dehydrogenase/reductase SDR  34.89 
 
 
262 aa  135  4e-31  Acidovorax ebreus TPSY  Bacteria  normal  0.675718  n/a   
 
 
-
 
NC_009484  Acry_2398  short-chain dehydrogenase/reductase SDR  39.04 
 
 
249 aa  135  5e-31  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_0194  Short-chain dehydrogenase/reductase SDR  35.8 
 
 
244 aa  135  6.0000000000000005e-31  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_4710  short-chain dehydrogenase/reductase SDR  40.1 
 
 
258 aa  135  9e-31  Burkholderia phymatum STM815  Bacteria  normal  0.549149  normal  0.0208806 
 
 
-
 
NC_007760  Adeh_3217  short-chain dehydrogenase/reductase SDR  35.39 
 
 
253 aa  134  9.999999999999999e-31  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_013745  Htur_4636  short-chain dehydrogenase/reductase SDR  32.92 
 
 
254 aa  133  1.9999999999999998e-30  Haloterrigena turkmenica DSM 5511  Archaea  normal  n/a   
 
 
-
 
NC_014248  Aazo_3368  short-chain dehydrogenase/reductase SDR  37.04 
 
 
241 aa  134  1.9999999999999998e-30  'Nostoc azollae' 0708  Bacteria  normal  0.119808  n/a   
 
 
-
 
NC_011729  PCC7424_0488  short-chain dehydrogenase/reductase SDR  34.55 
 
 
261 aa  132  3.9999999999999996e-30  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_009636  Smed_1274  short-chain dehydrogenase/reductase SDR  36.61 
 
 
251 aa  132  3.9999999999999996e-30  Sinorhizobium medicae WSM419  Bacteria  normal  0.062755  normal 
 
 
-
 
NC_009338  Mflv_3370  short-chain dehydrogenase/reductase SDR  36.63 
 
 
285 aa  132  3.9999999999999996e-30  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.976299 
 
 
-
 
NC_008782  Ajs_2567  short-chain dehydrogenase/reductase SDR  34.47 
 
 
251 aa  132  3.9999999999999996e-30  Acidovorax sp. JS42  Bacteria  normal  hitchhiker  0.00491372 
 
 
-
 
NC_010501  PputW619_3131  short-chain dehydrogenase/reductase SDR  33.47 
 
 
245 aa  132  5e-30  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_4845  short-chain dehydrogenase/reductase SDR  36.67 
 
 
252 aa  132  6.999999999999999e-30  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_2737  short-chain dehydrogenase/reductase SDR  33.75 
 
 
245 aa  131  7.999999999999999e-30  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_1481  short-chain dehydrogenase/reductase SDR  32.35 
 
 
239 aa  131  9e-30  Roseiflexus sp. RS-1  Bacteria  normal  0.175599  normal 
 
 
-
 
NC_007760  Adeh_3205  short-chain dehydrogenase/reductase SDR  35.83 
 
 
244 aa  130  2.0000000000000002e-29  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_4578  short-chain dehydrogenase/reductase SDR  34.17 
 
 
264 aa  130  2.0000000000000002e-29  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009487  SaurJH9_2505  short-chain dehydrogenase/reductase SDR  33.05 
 
 
231 aa  130  3e-29  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_2555  short-chain dehydrogenase/reductase SDR  33.05 
 
 
231 aa  130  3e-29  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.459049  n/a   
 
 
-
 
NC_008254  Meso_3782  short-chain dehydrogenase/reductase SDR  35.27 
 
 
258 aa  129  6e-29  Chelativorans sp. BNC1  Bacteria  normal  0.143319  n/a   
 
 
-
 
NC_013922  Nmag_2284  short-chain dehydrogenase/reductase SDR  34.63 
 
 
259 aa  128  7.000000000000001e-29  Natrialba magadii ATCC 43099  Archaea  normal  0.496594  n/a   
 
 
-
 
NC_012850  Rleg_4559  short-chain dehydrogenase/reductase SDR  36.51 
 
 
244 aa  128  1.0000000000000001e-28  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0125509  normal 
 
 
-
 
NC_013757  Gobs_3104  short-chain dehydrogenase/reductase SDR  34.27 
 
 
252 aa  128  1.0000000000000001e-28  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_0747  short-chain dehydrogenase/reductase SDR  33.47 
 
 
239 aa  128  1.0000000000000001e-28  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.785555  normal  0.162372 
 
 
-
 
NC_009621  Smed_5892  short-chain dehydrogenase/reductase SDR  37.66 
 
 
240 aa  127  1.0000000000000001e-28  Sinorhizobium medicae WSM419  Bacteria  normal  0.197583  normal  0.684579 
 
 
-
 
NC_007492  Pfl01_2470  Short-chain dehydrogenase/reductase SDR  32.92 
 
 
244 aa  127  2.0000000000000002e-28  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_010087  Bmul_5635  short-chain dehydrogenase/reductase SDR  34.17 
 
 
247 aa  127  2.0000000000000002e-28  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_008025  Dgeo_2238  short-chain dehydrogenase/reductase SDR  38.62 
 
 
317 aa  127  2.0000000000000002e-28  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_3907  short-chain dehydrogenase/reductase SDR  34.45 
 
 
246 aa  126  4.0000000000000003e-28  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.267776 
 
 
-
 
NC_007412  Ava_C0112  NAD-dependent epimerase/dehydratase  32.64 
 
 
244 aa  125  4.0000000000000003e-28  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_011885  Cyan7425_0107  short-chain dehydrogenase/reductase SDR  34.54 
 
 
258 aa  126  4.0000000000000003e-28  Cyanothece sp. PCC 7425  Bacteria  n/a    normal 
 
 
-
 
NC_010338  Caul_0159  short-chain dehydrogenase/reductase SDR  34.71 
 
 
249 aa  126  4.0000000000000003e-28  Caulobacter sp. K31  Bacteria  normal  0.410897  normal  0.168063 
 
 
-
 
NC_008148  Rxyl_3009  short-chain dehydrogenase/reductase SDR  35.47 
 
 
260 aa  125  5e-28  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.41043  n/a   
 
 
-
 
NC_011726  PCC8801_0911  short chain dehydrogenase  32.63 
 
 
242 aa  125  6e-28  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009972  Haur_2059  short-chain dehydrogenase/reductase SDR  32 
 
 
252 aa  125  7e-28  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_3865  short-chain dehydrogenase/reductase SDR  33.33 
 
 
247 aa  125  7e-28  Serratia proteamaculans 568  Bacteria  normal  0.269971  normal 
 
 
-
 
NC_012791  Vapar_2595  short-chain dehydrogenase/reductase SDR  38.46 
 
 
254 aa  125  9e-28  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_012028  Hlac_3251  short-chain dehydrogenase/reductase SDR  35.51 
 
 
259 aa  125  9e-28  Halorubrum lacusprofundi ATCC 49239  Archaea  n/a    n/a   
 
 
-
 
NC_008781  Pnap_2307  3-oxoacyl-(acyl-carrier-protein) reductase  33.19 
 
 
247 aa  124  1e-27  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_013161  Cyan8802_0938  short chain dehydrogenase  32.63 
 
 
242 aa  124  1e-27  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_0104  short-chain dehydrogenase/reductase SDR  35.81 
 
 
246 aa  124  1e-27  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.650868  normal 
 
 
-
 
NC_009720  Xaut_3335  short-chain dehydrogenase/reductase SDR  37.34 
 
 
246 aa  124  1e-27  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_2071  short-chain dehydrogenase/reductase SDR  31.09 
 
 
239 aa  124  2e-27  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.420603  normal 
 
 
-
 
NC_012669  Bcav_3510  short-chain dehydrogenase/reductase SDR  37.38 
 
 
251 aa  124  2e-27  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.439576 
 
 
-
 
NC_013093  Amir_2185  short-chain dehydrogenase/reductase SDR  37.14 
 
 
237 aa  123  2e-27  Actinosynnema mirum DSM 43827  Bacteria  normal  0.756927  n/a   
 
 
-
 
NC_008531  LEUM_1086  Short-chain alcohol dehydrogenase of unknown specificity  32.78 
 
 
247 aa  124  2e-27  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  0.144372  n/a   
 
 
-
 
NC_011138  MADE_01927  putative oxidoreductase  32.64 
 
 
252 aa  123  3e-27  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.160278  n/a   
 
 
-
 
NC_008009  Acid345_2262  short-chain dehydrogenase/reductase SDR  32.91 
 
 
244 aa  123  3e-27  Candidatus Koribacter versatilis Ellin345  Bacteria  hitchhiker  0.0000989308  normal 
 
 
-
 
NC_013595  Sros_9335  short-chain dehydrogenase/reductase SDR  36.24 
 
 
250 aa  122  4e-27  Streptosporangium roseum DSM 43021  Bacteria  normal  0.728753  normal  0.802866 
 
 
-
 
NC_007908  Rfer_4047  3-oxoacyl-(acyl-carrier-protein) reductase  33.48 
 
 
249 aa  122  6e-27  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_0924  short-chain dehydrogenase/reductase SDR  40.38 
 
 
321 aa  122  6e-27  Frankia sp. EAN1pec  Bacteria  decreased coverage  0.00780913  normal  0.965318 
 
 
-
 
NC_009523  RoseRS_4552  short-chain dehydrogenase/reductase SDR  35.81 
 
 
246 aa  122  6e-27  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_4660  short-chain dehydrogenase/reductase SDR  35.63 
 
 
261 aa  122  7e-27  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.268545  normal 
 
 
-
 
NC_010172  Mext_1352  short-chain dehydrogenase/reductase SDR  35.94 
 
 
282 aa  122  7e-27  Methylobacterium extorquens PA1  Bacteria  normal  0.316546  normal  0.241504 
 
 
-
 
NC_011757  Mchl_1552  short-chain dehydrogenase/reductase SDR  32.88 
 
 
248 aa  122  7e-27  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.0714452  normal 
 
 
-
 
NC_009954  Cmaq_1385  short-chain dehydrogenase/reductase SDR  31.47 
 
 
248 aa  121  9e-27  Caldivirga maquilingensis IC-167  Archaea  normal  normal 
 
 
-
 
NC_011884  Cyan7425_0401  short-chain dehydrogenase/reductase SDR  35.37 
 
 
240 aa  121  9e-27  Cyanothece sp. PCC 7425  Bacteria  normal  0.256418  normal  0.85584 
 
 
-
 
NC_008705  Mkms_1575  short-chain dehydrogenase/reductase SDR  34.02 
 
 
246 aa  120  9.999999999999999e-27  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_2234  Short-chain dehydrogenase/reductase SDR  39.08 
 
 
254 aa  121  9.999999999999999e-27  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_4295  short-chain dehydrogenase/reductase SDR  35.56 
 
 
244 aa  121  9.999999999999999e-27  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_1226  short-chain dehydrogenase/reductase SDR  33.76 
 
 
247 aa  121  9.999999999999999e-27  Methylobacterium populi BJ001  Bacteria  normal  0.340445  normal  0.365193 
 
 
-
 
NC_008146  Mmcs_1552  short-chain dehydrogenase/reductase SDR  34.02 
 
 
246 aa  120  9.999999999999999e-27  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_3738  short-chain dehydrogenase/reductase SDR  33.61 
 
 
245 aa  121  9.999999999999999e-27  Pseudomonas putida F1  Bacteria  normal  0.880926  normal 
 
 
-
 
NC_009441  Fjoh_5037  3-ketoacyl-(acyl-carrier-protein) reductase  32.02 
 
 
238 aa  120  1.9999999999999998e-26  Flavobacterium johnsoniae UW101  Bacteria  normal  0.293143  n/a   
 
 
-
 
NC_013946  Mrub_1117  short-chain dehydrogenase/reductase SDR  30.08 
 
 
233 aa  120  1.9999999999999998e-26  Meiothermus ruber DSM 1279  Bacteria  decreased coverage  0.000000223483  normal  0.996665 
 
 
-
 
NC_013730  Slin_0457  short-chain dehydrogenase/reductase SDR  31.25 
 
 
238 aa  120  1.9999999999999998e-26  Spirosoma linguale DSM 74  Bacteria  normal  0.644121  normal 
 
 
-
 
NC_008254  Meso_3769  short-chain dehydrogenase/reductase SDR  31.22 
 
 
247 aa  120  1.9999999999999998e-26  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_3101  short-chain dehydrogenase/reductase SDR  38.42 
 
 
280 aa  120  1.9999999999999998e-26  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.300242  normal  0.231356 
 
 
-
 
NC_013161  Cyan8802_0501  short-chain dehydrogenase/reductase SDR  33.61 
 
 
244 aa  120  3e-26  Cyanothece sp. PCC 8802  Bacteria  normal  hitchhiker  0.00365065 
 
 
-
 
NC_013730  Slin_2192  short-chain dehydrogenase/reductase SDR  30.42 
 
 
256 aa  120  3e-26  Spirosoma linguale DSM 74  Bacteria  normal  hitchhiker  0.0046226 
 
 
-
 
NC_010676  Bphyt_5978  short-chain dehydrogenase/reductase SDR  37.11 
 
 
254 aa  120  3e-26  Burkholderia phytofirmans PsJN  Bacteria  normal  0.161271  normal  0.813705 
 
 
-
 
NC_009636  Smed_2171  short-chain dehydrogenase/reductase SDR  38.46 
 
 
253 aa  119  3e-26  Sinorhizobium medicae WSM419  Bacteria  normal  0.0299033  normal 
 
 
-
 
NC_011726  PCC8801_0488  short-chain dehydrogenase/reductase SDR  33.61 
 
 
244 aa  120  3e-26  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_005945  BAS4042  short chain dehydrogenase/reductase family oxidoreductase  35.23 
 
 
264 aa  119  3.9999999999999996e-26  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_4357  short chain dehydrogenase/reductase family oxidoreductase  35.23 
 
 
264 aa  119  3.9999999999999996e-26  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A4268  oxidoreductase, short-chain dehydrogenase/reductase family  35.23 
 
 
264 aa  119  3.9999999999999996e-26  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_3881  oxidoreductase, short-chain dehydrogenase/reductase  35.23 
 
 
264 aa  119  4.9999999999999996e-26  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_002976  SERP2049  short chain dehydrogenase/reductase family oxidoreductase  28.51 
 
 
230 aa  119  6e-26  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_1562  short-chain dehydrogenase/reductase SDR  39.79 
 
 
275 aa  119  6e-26  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0498761  n/a   
 
 
-
 
NC_011773  BCAH820_4158  oxidoreductase, short-chain dehydrogenase/reductase family  35.23 
 
 
264 aa  119  6e-26  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_010184  BcerKBAB4_3967  short-chain dehydrogenase/reductase SDR  34.72 
 
 
264 aa  119  6e-26  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0321162  n/a   
 
 
-
 
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