| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_0924 |
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| Symbol | |
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| ID | 5669338 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. EAN1pec |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009921 |
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| Strand | - |
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| Start bp | 1074820 |
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| End bp | 1075785 |
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| Gene Length | 966 bp |
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| Protein Length | 321 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 641239851 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001505286 |
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| Protein GI | 158312778 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00780913 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.965318 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGGACG ACGACGTCCC GGCCGGTCAT TCCACGCGGA CCGCGCCGGA GGCCCAGGGG
GCATCCACCG GACGACGGGC GCGACAGCCA CAGGCCGACG CCTCGGCCCC GGCGCGGGCG
GTCACGGCAC CACGCCCACG AGCCGGCACG GCGGACGGCC CCGGCGATGA CGGTAGCGTC
GCGACGGTGA CCGGCCCGTT CGCCAGGACG GCCGGCGACG CCGTCGCGGG CGGCGGCGAG
TACGCCGGCC GGGTCGCCTT CGTGACCGGA TCCGGCTCGG GAATCGGCGC CGCCTGTGCC
CGCCGGCTGG CCGCGGCCGG CGCCTTCGTC GTCCTGGCCG ACCGGGACAC CGTCGCGGCC
AAGGAGGTCG CCGGCGAGAT CGAGGCGGCC GGCGGCACCG CACTGGCGGT GGCGGTCGAC
GTCGCCGACC CGGAGTCGGT CGCCCAGGCC GTCGCCACGG CGATCGAGGC CGGTGGACGG
CTCGACCTCG CGGTCAACAA CGCGGGCATC GCCACCGACC GGGCCCCGCT GGAGGACATC
TCCCTCGCCG ACTGGGACCG GGTTCTCGCG GTCAACCTCT CCGGCGTCTT CTACAGCATG
CGCGCCGAGA TCCCGGCGAT GCTCGCGGCC GGCGGCGGCT CGATCGTCAA CATGGCCTCC
GTGCTGGGCA CGGTCGGCCT ACAGGGCACA CCGGCCTACG TCGCGGCCAA GCACGGCGTG
ATCGGACTCA CCAGGGTGGC CGCGCTGGAC AACGCGACAC GCGGAATCCG GGTCAACGCG
GTAGCACCCG GATTCATCGA CACCACGATG GTCAGCTCAC ACCGCGGAGC ACGCTTCTTC
CAGCCGATGA ACCGGCTGGG GACCGCCGAC GAGGTCGCCG AGGTCGTCCA CTTCCTACTC
TCCGACCGCG CGTCCCTGGT GACCGGCAGC GTCTACTCCG CCGACGGGGG ATTCACCGCC
CGCTGA
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| Protein sequence | MTDDDVPAGH STRTAPEAQG ASTGRRARQP QADASAPARA VTAPRPRAGT ADGPGDDGSV
ATVTGPFART AGDAVAGGGE YAGRVAFVTG SGSGIGAACA RRLAAAGAFV VLADRDTVAA
KEVAGEIEAA GGTALAVAVD VADPESVAQA VATAIEAGGR LDLAVNNAGI ATDRAPLEDI
SLADWDRVLA VNLSGVFYSM RAEIPAMLAA GGGSIVNMAS VLGTVGLQGT PAYVAAKHGV
IGLTRVAALD NATRGIRVNA VAPGFIDTTM VSSHRGARFF QPMNRLGTAD EVAEVVHFLL
SDRASLVTGS VYSADGGFTA R
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