More than 300 homologs were found in PanDaTox collection
for query gene Snas_6385 on replicon NC_013947
Organism: Stackebrandtia nassauensis DSM 44728



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013947  Snas_6385  cell envelope-related transcriptional attenuator  100 
 
 
358 aa  740    Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_6317  cell envelope-related transcriptional attenuator  53.95 
 
 
390 aa  376  1e-103  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_0942  cell envelope-related transcriptional attenuator  52.45 
 
 
349 aa  355  5e-97  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.165177  normal  0.737127 
 
 
-
 
NC_013947  Snas_6384  cell envelope-related transcriptional attenuator  49.57 
 
 
352 aa  334  2e-90  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_1681  cell envelope-related transcriptional attenuator  45.21 
 
 
357 aa  298  7e-80  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0240426  normal  0.562376 
 
 
-
 
NC_009380  Strop_4511  transcription attenuator LytR  34.82 
 
 
358 aa  186  8e-46  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_5021  cell envelope-related transcriptional attenuator  35.03 
 
 
312 aa  167  4e-40  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00237783 
 
 
-
 
NC_009380  Strop_3629  transcription attenuator LytR  31.37 
 
 
378 aa  158  1e-37  Salinispora tropica CNB-440  Bacteria  normal  0.142384  normal 
 
 
-
 
NC_009953  Sare_4011  cell envelope-related transcriptional attenuator  31.37 
 
 
380 aa  157  2e-37  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.000201414 
 
 
-
 
NC_009380  Strop_4510  transcription attenuator LytR  33.67 
 
 
420 aa  144  3e-33  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_5020  cell envelope-related transcriptional attenuator  31.99 
 
 
414 aa  130  2.0000000000000002e-29  Salinispora arenicola CNS-205  Bacteria  normal  0.417569  hitchhiker  0.000783217 
 
 
-
 
NC_013510  Tcur_4461  cell envelope-related transcriptional attenuator  28.57 
 
 
390 aa  109  7.000000000000001e-23  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_09330  cell envelope-related function transcriptional attenuator common domain  30 
 
 
349 aa  109  8.000000000000001e-23  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_1363  Transcriptional regulator-like protein  27.94 
 
 
530 aa  108  1e-22  Streptosporangium roseum DSM 43021  Bacteria  normal  0.640186  normal 
 
 
-
 
NC_008146  Mmcs_5038  cell envelope-related transcriptional attenuator  33.1 
 
 
311 aa  108  2e-22  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_5126  cell envelope-related transcriptional attenuator  33.1 
 
 
311 aa  108  2e-22  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_5418  cell envelope-related transcriptional attenuator  33.1 
 
 
311 aa  108  2e-22  Mycobacterium sp. JLS  Bacteria  normal  normal  0.710746 
 
 
-
 
NC_014165  Tbis_0728  cell envelope-related transcriptional attenuator  28.02 
 
 
618 aa  105  9e-22  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.0188197 
 
 
-
 
NC_013595  Sros_9260  Transcriptional regulator-like protein  30.48 
 
 
481 aa  105  1e-21  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.969868 
 
 
-
 
NC_014210  Ndas_3877  cell envelope-related transcriptional attenuator  27.81 
 
 
497 aa  103  4e-21  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013174  Jden_2257  cell envelope-related transcriptional attenuator  30.18 
 
 
362 aa  103  4e-21  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.518809 
 
 
-
 
NC_013159  Svir_16350  cell envelope-related transcriptional attenuator  34.3 
 
 
307 aa  103  5e-21  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.0716913  normal  0.935262 
 
 
-
 
NC_014210  Ndas_0934  cell envelope-related transcriptional attenuator  28.97 
 
 
480 aa  103  6e-21  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.0202033 
 
 
-
 
NC_014165  Tbis_3514  cell envelope-related transcriptional attenuator  29.41 
 
 
468 aa  102  1e-20  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_4096  cell envelope-related transcriptional attenuator  27.41 
 
 
468 aa  100  3e-20  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_3385  membrane-bound transcriptional regulator LytR  26.53 
 
 
313 aa  100  3e-20  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013203  Apar_0187  cell envelope-related transcriptional attenuator  26.88 
 
 
563 aa  100  4e-20  Atopobium parvulum DSM 20469  Bacteria  normal  normal  0.234515 
 
 
-
 
NC_013441  Gbro_0172  cell envelope-related function transcriptional attenuator, LytR/CpsA family  31.56 
 
 
307 aa  100  4e-20  Gordonia bronchialis DSM 43247  Bacteria  normal  0.954157  n/a   
 
 
-
 
NC_013093  Amir_1591  cell envelope-related transcriptional attenuator  30.88 
 
 
336 aa  99.8  6e-20  Actinosynnema mirum DSM 43827  Bacteria  normal  0.230007  n/a   
 
 
-
 
NC_009338  Mflv_1142  cell envelope-related transcriptional attenuator  32.3 
 
 
409 aa  99.8  6e-20  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.671395  normal  0.110733 
 
 
-
 
NC_012803  Mlut_08920  cell envelope-related function transcriptional attenuator common domain protein  27.24 
 
 
381 aa  99.4  8e-20  Micrococcus luteus NCTC 2665  Bacteria  normal  0.667016  n/a   
 
 
-
 
NC_013093  Amir_1037  cell envelope-related transcriptional attenuator  28.4 
 
 
732 aa  99.4  1e-19  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_0046  cell envelope-related transcriptional attenuator  31.36 
 
 
320 aa  98.6  2e-19  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_0784  cell envelope-related transcriptional attenuator  26.46 
 
 
400 aa  98.2  2e-19  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_20880  cell envelope-related function transcriptional attenuator common domain  31.82 
 
 
296 aa  97.1  5e-19  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013170  Ccur_08290  cell envelope-related function transcriptional attenuator common domain protein  26.97 
 
 
443 aa  95.9  8e-19  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.154905  normal  0.235154 
 
 
-
 
NC_013131  Caci_7618  cell envelope-related transcriptional attenuator  28.14 
 
 
643 aa  95.9  1e-18  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013169  Ksed_08470  cell envelope-related function transcriptional attenuator common domain protein  31.54 
 
 
394 aa  95.5  1e-18  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal  0.282031 
 
 
-
 
NC_013216  Dtox_4120  cell envelope-related transcriptional attenuator  29.84 
 
 
445 aa  95.1  2e-18  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.0000955467  unclonable  0.000000000378568 
 
 
-
 
NC_007333  Tfu_2526  cell envelope-related transcriptional attenuator  27.55 
 
 
478 aa  94.7  2e-18  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_2542  cell envelope-related transcriptional attenuator  28.62 
 
 
509 aa  94.4  3e-18  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_3112  cell envelope-related transcriptional attenuator  30.32 
 
 
419 aa  94.4  3e-18  Desulfotomaculum reducens MI-1  Bacteria  normal  0.0132049  n/a   
 
 
-
 
NC_012793  GWCH70_3272  membrane-bound transcriptional regulator LytR  27.14 
 
 
310 aa  94  4e-18  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.000512755  n/a   
 
 
-
 
NC_008726  Mvan_5665  cell envelope-related transcriptional attenuator  30.8 
 
 
306 aa  94  4e-18  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.304907  normal  0.0393509 
 
 
-
 
NC_007644  Moth_1399  cell envelope-related transcriptional attenuator  28.22 
 
 
414 aa  93.2  7e-18  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_0935  cell envelope-related transcriptional attenuator  26.1 
 
 
465 aa  92.8  7e-18  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.0761113 
 
 
-
 
NC_008578  Acel_0411  cell envelope-related transcriptional attenuator  25.09 
 
 
520 aa  92.4  9e-18  Acidothermus cellulolyticus 11B  Bacteria  normal  0.118906  normal 
 
 
-
 
NC_007644  Moth_2366  cell envelope-related transcriptional attenuator  29.96 
 
 
319 aa  92.4  1e-17  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.000000181907  unclonable  0.00000001 
 
 
-
 
NC_009513  Lreu_1352  cell envelope-related transcriptional attenuator  29.48 
 
 
488 aa  91.7  2e-17  Lactobacillus reuteri DSM 20016  Bacteria  hitchhiker  0.00278352  n/a   
 
 
-
 
NC_008699  Noca_3302  cell envelope-related transcriptional attenuator  27.49 
 
 
406 aa  91.3  2e-17  Nocardioides sp. JS614  Bacteria  normal  0.0160587  n/a   
 
 
-
 
NC_013530  Xcel_2594  cell envelope-related transcriptional attenuator  26.76 
 
 
442 aa  91.7  2e-17  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_1965  cell envelope-related transcriptional attenuator  23.58 
 
 
487 aa  91.3  3e-17  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.0000000312518 
 
 
-
 
NC_008541  Arth_3228  cell envelope-related transcriptional attenuator  26.88 
 
 
377 aa  90.9  3e-17  Arthrobacter sp. FB24  Bacteria  normal  0.0471557  n/a   
 
 
-
 
NC_013947  Snas_6386  cell envelope-related transcriptional attenuator  26.33 
 
 
382 aa  90.5  4e-17  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_4529  cell envelope-related transcriptional attenuator  29.89 
 
 
365 aa  90.5  4e-17  Nakamurella multipartita DSM 44233  Bacteria  normal  0.25457  normal 
 
 
-
 
NC_013170  Ccur_01650  cell envelope-related function transcriptional attenuator common domain protein  27.89 
 
 
512 aa  90.5  4e-17  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.475151  hitchhiker  0.0000000000510123 
 
 
-
 
NC_014151  Cfla_2383  cell envelope-related transcriptional attenuator  26.25 
 
 
389 aa  89.7  6e-17  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0868762  hitchhiker  0.00772059 
 
 
-
 
NC_013411  GYMC61_3243  cell envelope-related transcriptional attenuator  26.42 
 
 
335 aa  89  1e-16  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009921  Franean1_1248  cell envelope-related transcriptional attenuator  28.27 
 
 
512 aa  89  1e-16  Frankia sp. EAN1pec  Bacteria  normal  0.375848  normal  0.0192244 
 
 
-
 
NC_008531  LEUM_1851  transcriptional regulator  29.55 
 
 
392 aa  88.2  2e-16  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_2228  cell envelope-related transcriptional attenuator  23.86 
 
 
521 aa  87.8  2e-16  Arthrobacter sp. FB24  Bacteria  hitchhiker  0.000756142  n/a   
 
 
-
 
NC_009664  Krad_3901  cell envelope-related transcriptional attenuator  30.04 
 
 
407 aa  87.4  3e-16  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0120062 
 
 
-
 
NC_011886  Achl_3034  cell envelope-related transcriptional attenuator  28.08 
 
 
379 aa  87.4  3e-16  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.63975 
 
 
-
 
NC_013131  Caci_7619  cell envelope-related transcriptional attenuator  26.78 
 
 
379 aa  86.3  7e-16  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_1198  cell envelope-related transcriptional attenuator  28.63 
 
 
585 aa  86.3  7e-16  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_0717  cell envelope-related transcriptional attenuator  29.33 
 
 
504 aa  85.9  9e-16  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.0100935 
 
 
-
 
NC_009767  Rcas_0369  cell envelope-related transcriptional attenuator  28.07 
 
 
356 aa  85.9  0.000000000000001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.117824  normal  0.3088 
 
 
-
 
NC_009523  RoseRS_0131  cell envelope-related transcriptional attenuator  28.02 
 
 
353 aa  85.9  0.000000000000001  Roseiflexus sp. RS-1  Bacteria  normal  0.763008  normal 
 
 
-
 
NC_010424  Daud_2095  cell envelope-related transcriptional attenuator  28.14 
 
 
411 aa  85.5  0.000000000000001  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_2956  cell envelope-related transcriptional attenuator  27.53 
 
 
453 aa  85.1  0.000000000000002  Thermobifida fusca YX  Bacteria  normal  0.482149  n/a   
 
 
-
 
NC_007777  Francci3_3496  cell envelope-related transcriptional attenuator  27 
 
 
486 aa  84.7  0.000000000000002  Frankia sp. CcI3  Bacteria  normal  0.625789  normal  0.409021 
 
 
-
 
NC_013093  Amir_6348  cell envelope-related transcriptional attenuator  25.58 
 
 
517 aa  85.1  0.000000000000002  Actinosynnema mirum DSM 43827  Bacteria  normal  0.352796  n/a   
 
 
-
 
NC_013595  Sros_1348  Transcriptional regulator-like protein  27.82 
 
 
505 aa  84.3  0.000000000000003  Streptosporangium roseum DSM 43021  Bacteria  normal  0.958942  normal 
 
 
-
 
NC_013204  Elen_3000  cell envelope-related transcriptional attenuator  27.37 
 
 
495 aa  84  0.000000000000004  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_009012  Cthe_0727  cell envelope-related transcriptional attenuator  26.09 
 
 
308 aa  84  0.000000000000004  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.0775994  n/a   
 
 
-
 
NC_008578  Acel_0412  cell envelope-related transcriptional attenuator  26.99 
 
 
491 aa  83.6  0.000000000000005  Acidothermus cellulolyticus 11B  Bacteria  normal  0.245301  normal 
 
 
-
 
NC_012669  Bcav_1166  cell envelope-related protein transcriptional attenuator  28.23 
 
 
395 aa  83.2  0.000000000000006  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_005957  BT9727_4877  LytR family transcriptional regulator  28.41 
 
 
375 aa  83.2  0.000000000000006  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK4892  LytR family transcriptional regulator  28.41 
 
 
375 aa  83.2  0.000000000000006  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_3920  cell envelope-related function transcriptional attenuator, LytR/CpsA family  23.1 
 
 
734 aa  83.2  0.000000000000006  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_5288  transcription antiterminator, LytR family  28.41 
 
 
375 aa  83.6  0.000000000000006  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00000000327862 
 
 
-
 
NC_005945  BAS5047  LytR family transcription antiterminator  28.41 
 
 
375 aa  83.2  0.000000000000007  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_5432  LytR family transcription antiterminator  28.41 
 
 
375 aa  83.2  0.000000000000007  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_0624  cell envelope-related transcriptional attenuator  28.62 
 
 
481 aa  82.8  0.000000000000007  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_4335  cell envelope-related transcriptional attenuator  28.16 
 
 
521 aa  83.2  0.000000000000007  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.0591559  n/a   
 
 
-
 
NC_011725  BCB4264_A5319  transcription antiterminator, LytR family  28.03 
 
 
374 aa  83.2  0.000000000000007  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_5306  LytR family transcription antiterminator  27.65 
 
 
377 aa  82  0.00000000000001  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_3214  cell envelope-related transcriptional attenuator  29.15 
 
 
443 aa  82.4  0.00000000000001  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.00000235319 
 
 
-
 
NC_013174  Jden_1864  cell envelope-related transcriptional attenuator  26.25 
 
 
391 aa  82.4  0.00000000000001  Jonesia denitrificans DSM 20603  Bacteria  normal  0.383316  normal  0.036217 
 
 
-
 
NC_011772  BCG9842_B5640  transcription antiterminator, LytR family  27.27 
 
 
372 aa  81.3  0.00000000000002  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.00000000000247251 
 
 
-
 
NC_005957  BT9727_4947  membrane-bound transcriptional regulator LytR  31.4 
 
 
304 aa  81.6  0.00000000000002  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.0889022  n/a   
 
 
-
 
NC_009565  TBFG_10837  hypothetical protein  25.15 
 
 
684 aa  81.6  0.00000000000002  Mycobacterium tuberculosis F11  Bacteria  normal  hitchhiker  0.000372154 
 
 
-
 
NC_013169  Ksed_03580  cell envelope-related function transcriptional attenuator common domain protein  32.04 
 
 
448 aa  82  0.00000000000002  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.742286  normal  0.880699 
 
 
-
 
NC_013595  Sros_0120  Transcriptional regulator-like protein  30.81 
 
 
326 aa  81.3  0.00000000000002  Streptosporangium roseum DSM 43021  Bacteria  normal  0.224299  normal 
 
 
-
 
NC_011886  Achl_0126  cell envelope-related transcriptional attenuator  24.91 
 
 
499 aa  81.3  0.00000000000002  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_009921  Franean1_5902  cell envelope-related transcriptional attenuator  27.43 
 
 
625 aa  81.3  0.00000000000003  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_2100  cell envelope-related transcriptional attenuator  26.1 
 
 
393 aa  80.9  0.00000000000003  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_011658  BCAH187_A5364  transcription antiterminator, LytR family  27.65 
 
 
377 aa  80.9  0.00000000000003  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_0030  cell envelope-related transcriptional attenuator  26.1 
 
 
506 aa  80.9  0.00000000000003  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0770441 
 
 
-
 
NC_013159  Svir_28900  cell envelope-related function transcriptional attenuator common domain protein  26.89 
 
 
522 aa  80.5  0.00000000000004  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.385343 
 
 
-
 
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