More than 300 homologs were found in PanDaTox collection
for query gene Noca_3302 on replicon NC_008699
Organism: Nocardioides sp. JS614



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008699  Noca_3302  cell envelope-related transcriptional attenuator  100 
 
 
406 aa  831    Nocardioides sp. JS614  Bacteria  normal  0.0160587  n/a   
 
 
-
 
NC_008699  Noca_0784  cell envelope-related transcriptional attenuator  49.72 
 
 
400 aa  342  5.999999999999999e-93  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_0030  cell envelope-related transcriptional attenuator  46.95 
 
 
506 aa  250  4e-65  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0770441 
 
 
-
 
NC_013510  Tcur_4096  cell envelope-related transcriptional attenuator  40.36 
 
 
468 aa  224  2e-57  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_9260  Transcriptional regulator-like protein  42.44 
 
 
481 aa  217  2e-55  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.969868 
 
 
-
 
NC_013510  Tcur_0624  cell envelope-related transcriptional attenuator  41.59 
 
 
481 aa  214  1.9999999999999998e-54  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_7619  cell envelope-related transcriptional attenuator  39.74 
 
 
379 aa  207  2e-52  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_2526  cell envelope-related transcriptional attenuator  36.84 
 
 
478 aa  204  2e-51  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_3514  cell envelope-related transcriptional attenuator  40.07 
 
 
468 aa  199  6e-50  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_7618  cell envelope-related transcriptional attenuator  37.43 
 
 
643 aa  197  2.0000000000000003e-49  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_0934  cell envelope-related transcriptional attenuator  36.16 
 
 
480 aa  191  1e-47  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.0202033 
 
 
-
 
NC_013174  Jden_1864  cell envelope-related transcriptional attenuator  35.71 
 
 
391 aa  189  9e-47  Jonesia denitrificans DSM 20603  Bacteria  normal  0.383316  normal  0.036217 
 
 
-
 
NC_012669  Bcav_1166  cell envelope-related protein transcriptional attenuator  35.95 
 
 
395 aa  189  9e-47  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_1363  Transcriptional regulator-like protein  36.54 
 
 
530 aa  188  1e-46  Streptosporangium roseum DSM 43021  Bacteria  normal  0.640186  normal 
 
 
-
 
NC_014165  Tbis_0728  cell envelope-related transcriptional attenuator  37.58 
 
 
618 aa  186  8e-46  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.0188197 
 
 
-
 
NC_012669  Bcav_1167  cell envelope-related protein transcriptional attenuator  34.37 
 
 
417 aa  186  9e-46  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_2383  cell envelope-related transcriptional attenuator  37.65 
 
 
389 aa  185  2.0000000000000003e-45  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0868762  hitchhiker  0.00772059 
 
 
-
 
NC_013131  Caci_7541  cell envelope-related transcriptional attenuator  35.57 
 
 
540 aa  179  5.999999999999999e-44  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.371514 
 
 
-
 
NC_012669  Bcav_3844  cell envelope-related protein transcriptional attenuator  36.7 
 
 
373 aa  179  1e-43  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_08580  cell envelope-related function transcriptional attenuator common domain protein  36.21 
 
 
396 aa  177  2e-43  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.783991  normal  0.393457 
 
 
-
 
NC_013521  Sked_08570  cell envelope-related function transcriptional attenuator common domain protein  35.29 
 
 
365 aa  178  2e-43  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.671315  normal  0.595892 
 
 
-
 
NC_013530  Xcel_2594  cell envelope-related transcriptional attenuator  33.06 
 
 
442 aa  177  2e-43  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013721  HMPREF0424_0589  putative transcriptional regulator  35.71 
 
 
498 aa  176  5e-43  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.581304 
 
 
-
 
NC_013172  Bfae_30000  cell envelope-related function transcriptional attenuator common domain  34.24 
 
 
395 aa  175  9.999999999999999e-43  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_2228  cell envelope-related transcriptional attenuator  33.64 
 
 
521 aa  171  2e-41  Arthrobacter sp. FB24  Bacteria  hitchhiker  0.000756142  n/a   
 
 
-
 
NC_011886  Achl_1965  cell envelope-related transcriptional attenuator  34.15 
 
 
487 aa  169  8e-41  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.0000000312518 
 
 
-
 
NC_008578  Acel_0411  cell envelope-related transcriptional attenuator  36.15 
 
 
520 aa  163  5.0000000000000005e-39  Acidothermus cellulolyticus 11B  Bacteria  normal  0.118906  normal 
 
 
-
 
NC_014210  Ndas_4745  cell envelope-related transcriptional attenuator  30.9 
 
 
584 aa  162  1e-38  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013441  Gbro_3920  cell envelope-related function transcriptional attenuator, LytR/CpsA family  31.3 
 
 
734 aa  160  4e-38  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_37600  cell envelope-related function transcriptional attenuator common domain protein  35.22 
 
 
619 aa  159  7e-38  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.760055  normal  0.249296 
 
 
-
 
NC_007333  Tfu_2956  cell envelope-related transcriptional attenuator  32.82 
 
 
453 aa  157  2e-37  Thermobifida fusca YX  Bacteria  normal  0.482149  n/a   
 
 
-
 
NC_013510  Tcur_4114  cell envelope-related transcriptional attenuator  37.37 
 
 
549 aa  158  2e-37  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_4976  cell envelope-related transcriptional attenuator  36.7 
 
 
551 aa  155  1e-36  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_0126  cell envelope-related transcriptional attenuator  33.63 
 
 
499 aa  155  1e-36  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_008578  Acel_0412  cell envelope-related transcriptional attenuator  37.58 
 
 
491 aa  154  2.9999999999999998e-36  Acidothermus cellulolyticus 11B  Bacteria  normal  0.245301  normal 
 
 
-
 
NC_014151  Cfla_3214  cell envelope-related transcriptional attenuator  33.93 
 
 
443 aa  153  5e-36  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.00000235319 
 
 
-
 
NC_009338  Mflv_1666  cell envelope-related transcriptional attenuator  33.07 
 
 
649 aa  151  2e-35  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_1248  cell envelope-related transcriptional attenuator  36.53 
 
 
512 aa  148  1.0000000000000001e-34  Frankia sp. EAN1pec  Bacteria  normal  0.375848  normal  0.0192244 
 
 
-
 
NC_014210  Ndas_0935  cell envelope-related transcriptional attenuator  33.59 
 
 
465 aa  147  3e-34  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.0761113 
 
 
-
 
NC_013530  Xcel_1025  cell envelope-related transcriptional attenuator  32.49 
 
 
434 aa  147  3e-34  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.11457  n/a   
 
 
-
 
NC_007777  Francci3_3496  cell envelope-related transcriptional attenuator  33.86 
 
 
486 aa  147  3e-34  Frankia sp. CcI3  Bacteria  normal  0.625789  normal  0.409021 
 
 
-
 
NC_008726  Mvan_5087  cell envelope-related transcriptional attenuator  34.73 
 
 
687 aa  147  4.0000000000000006e-34  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_4461  cell envelope-related transcriptional attenuator  36.62 
 
 
390 aa  145  2e-33  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_6814  cell envelope-related transcriptional attenuator  32.18 
 
 
1336 aa  144  3e-33  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_00540  cell envelope-related function transcriptional attenuator common domain protein  36.45 
 
 
357 aa  142  8e-33  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.916603  normal  0.105126 
 
 
-
 
NC_009565  TBFG_10837  hypothetical protein  32.57 
 
 
684 aa  142  9.999999999999999e-33  Mycobacterium tuberculosis F11  Bacteria  normal  hitchhiker  0.000372154 
 
 
-
 
NC_014210  Ndas_3877  cell envelope-related transcriptional attenuator  31.25 
 
 
497 aa  139  7e-32  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_4513  cell envelope-related transcriptional attenuator  33.77 
 
 
699 aa  139  7.999999999999999e-32  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_4600  cell envelope-related transcriptional attenuator  33.77 
 
 
699 aa  139  7.999999999999999e-32  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_4896  cell envelope-related transcriptional attenuator  33.77 
 
 
701 aa  139  7.999999999999999e-32  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_5902  cell envelope-related transcriptional attenuator  32.25 
 
 
625 aa  137  3.0000000000000003e-31  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_0712  cell envelope-related transcriptional attenuator  35.27 
 
 
573 aa  137  3.0000000000000003e-31  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_1348  Transcriptional regulator-like protein  34.4 
 
 
505 aa  137  5e-31  Streptosporangium roseum DSM 43021  Bacteria  normal  0.958942  normal 
 
 
-
 
NC_007333  Tfu_2542  cell envelope-related transcriptional attenuator  34.65 
 
 
509 aa  135  9e-31  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_0717  cell envelope-related transcriptional attenuator  33.22 
 
 
504 aa  135  9.999999999999999e-31  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.0100935 
 
 
-
 
NC_013235  Namu_4529  cell envelope-related transcriptional attenuator  33.45 
 
 
365 aa  130  4.0000000000000003e-29  Nakamurella multipartita DSM 44233  Bacteria  normal  0.25457  normal 
 
 
-
 
NC_009921  Franean1_5205  cell envelope-related transcriptional attenuator  32.01 
 
 
560 aa  130  4.0000000000000003e-29  Frankia sp. EAN1pec  Bacteria  normal  0.0714783  normal 
 
 
-
 
NC_009953  Sare_5020  cell envelope-related transcriptional attenuator  30.61 
 
 
414 aa  130  5.0000000000000004e-29  Salinispora arenicola CNS-205  Bacteria  normal  0.417569  hitchhiker  0.000783217 
 
 
-
 
NC_013530  Xcel_1026  cell envelope-related transcriptional attenuator  33.69 
 
 
402 aa  128  1.0000000000000001e-28  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.999724  n/a   
 
 
-
 
NC_012803  Mlut_08920  cell envelope-related function transcriptional attenuator common domain protein  34.82 
 
 
381 aa  126  6e-28  Micrococcus luteus NCTC 2665  Bacteria  normal  0.667016  n/a   
 
 
-
 
NC_014158  Tpau_1061  cell envelope-related transcriptional attenuator  27.68 
 
 
567 aa  126  6e-28  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_1037  cell envelope-related transcriptional attenuator  30.27 
 
 
732 aa  126  8.000000000000001e-28  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009380  Strop_4510  transcription attenuator LytR  33.47 
 
 
420 aa  125  1e-27  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_09330  cell envelope-related function transcriptional attenuator common domain  30.39 
 
 
349 aa  124  4e-27  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_1558  cell envelope-related transcriptional attenuator  29.83 
 
 
545 aa  123  7e-27  Frankia sp. CcI3  Bacteria  normal  normal  0.931439 
 
 
-
 
NC_013159  Svir_28900  cell envelope-related function transcriptional attenuator common domain protein  29.71 
 
 
522 aa  121  1.9999999999999998e-26  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.385343 
 
 
-
 
NC_009338  Mflv_1142  cell envelope-related transcriptional attenuator  32.57 
 
 
409 aa  122  1.9999999999999998e-26  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.671395  normal  0.110733 
 
 
-
 
NC_013131  Caci_2100  cell envelope-related transcriptional attenuator  31.53 
 
 
393 aa  120  4.9999999999999996e-26  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_1307  cell envelope-related transcriptional attenuator  34.09 
 
 
520 aa  119  7.999999999999999e-26  Frankia sp. EAN1pec  Bacteria  normal  0.386656  normal 
 
 
-
 
NC_013174  Jden_2257  cell envelope-related transcriptional attenuator  26.49 
 
 
362 aa  119  9.999999999999999e-26  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.518809 
 
 
-
 
NC_013093  Amir_6348  cell envelope-related transcriptional attenuator  29.39 
 
 
517 aa  118  1.9999999999999998e-25  Actinosynnema mirum DSM 43827  Bacteria  normal  0.352796  n/a   
 
 
-
 
NC_014158  Tpau_0136  cell envelope-related transcriptional attenuator  31.64 
 
 
466 aa  116  6.9999999999999995e-25  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_6386  cell envelope-related transcriptional attenuator  30.3 
 
 
382 aa  115  1.0000000000000001e-24  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_5665  cell envelope-related transcriptional attenuator  34.48 
 
 
306 aa  113  6e-24  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.304907  normal  0.0393509 
 
 
-
 
NC_008146  Mmcs_5038  cell envelope-related transcriptional attenuator  34.41 
 
 
311 aa  113  7.000000000000001e-24  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_3901  cell envelope-related transcriptional attenuator  33.99 
 
 
407 aa  113  7.000000000000001e-24  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0120062 
 
 
-
 
NC_008705  Mkms_5126  cell envelope-related transcriptional attenuator  34.41 
 
 
311 aa  113  7.000000000000001e-24  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_5418  cell envelope-related transcriptional attenuator  34.41 
 
 
311 aa  113  7.000000000000001e-24  Mycobacterium sp. JLS  Bacteria  normal  normal  0.710746 
 
 
-
 
NC_013757  Gobs_4335  cell envelope-related transcriptional attenuator  32.8 
 
 
521 aa  111  2.0000000000000002e-23  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.0591559  n/a   
 
 
-
 
NC_009921  Franean1_6827  cell envelope-related transcriptional attenuator  32.97 
 
 
516 aa  111  2.0000000000000002e-23  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_1591  cell envelope-related transcriptional attenuator  35.02 
 
 
336 aa  109  7.000000000000001e-23  Actinosynnema mirum DSM 43827  Bacteria  normal  0.230007  n/a   
 
 
-
 
NC_013093  Amir_6349  cell envelope-related transcriptional attenuator  30.19 
 
 
410 aa  109  9.000000000000001e-23  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_16350  cell envelope-related transcriptional attenuator  33.91 
 
 
307 aa  109  1e-22  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.0716913  normal  0.935262 
 
 
-
 
NC_013235  Namu_4212  cell envelope-related transcriptional attenuator  27.09 
 
 
496 aa  108  2e-22  Nakamurella multipartita DSM 44233  Bacteria  normal  normal  0.134321 
 
 
-
 
NC_008726  Mvan_1726  cell envelope-related transcriptional attenuator  29.4 
 
 
493 aa  108  2e-22  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_06080  cell envelope-related function transcriptional attenuator common domain protein  31 
 
 
538 aa  107  3e-22  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.832186  normal  0.188153 
 
 
-
 
NC_014165  Tbis_0046  cell envelope-related transcriptional attenuator  35.43 
 
 
320 aa  107  5e-22  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_013441  Gbro_1852  cell envelope-related function transcriptional attenuator, LytR/CpsA family  30.86 
 
 
676 aa  106  7e-22  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_5903  cell envelope-related transcriptional attenuator  30.69 
 
 
508 aa  105  1e-21  Frankia sp. EAN1pec  Bacteria  normal  normal  0.667474 
 
 
-
 
NC_013170  Ccur_01650  cell envelope-related function transcriptional attenuator common domain protein  28.65 
 
 
512 aa  105  1e-21  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.475151  hitchhiker  0.0000000000510123 
 
 
-
 
NC_008541  Arth_3228  cell envelope-related transcriptional attenuator  33.65 
 
 
377 aa  105  1e-21  Arthrobacter sp. FB24  Bacteria  normal  0.0471557  n/a   
 
 
-
 
NC_012803  Mlut_08810  cell envelope-related function transcriptional attenuator common domain protein  33.6 
 
 
374 aa  105  1e-21  Micrococcus luteus NCTC 2665  Bacteria  normal  0.155806  n/a   
 
 
-
 
NC_013159  Svir_06070  cell envelope-related function transcriptional attenuator common domain protein  32.88 
 
 
514 aa  104  2e-21  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.974325  normal  0.0563121 
 
 
-
 
NC_013169  Ksed_08470  cell envelope-related function transcriptional attenuator common domain protein  30.59 
 
 
394 aa  105  2e-21  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal  0.282031 
 
 
-
 
NC_009513  Lreu_1352  cell envelope-related transcriptional attenuator  28.98 
 
 
488 aa  105  2e-21  Lactobacillus reuteri DSM 20016  Bacteria  hitchhiker  0.00278352  n/a   
 
 
-
 
NC_013441  Gbro_0172  cell envelope-related function transcriptional attenuator, LytR/CpsA family  31.84 
 
 
307 aa  103  4e-21  Gordonia bronchialis DSM 43247  Bacteria  normal  0.954157  n/a   
 
 
-
 
NC_009338  Mflv_4737  cell envelope-related transcriptional attenuator  28.53 
 
 
493 aa  103  7e-21  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.440107  normal 
 
 
-
 
NC_013165  Shel_01960  cell envelope-related function transcriptional attenuator common domain protein  30.18 
 
 
490 aa  102  1e-20  Slackia heliotrinireducens DSM 20476  Bacteria  hitchhiker  0.00481524  normal 
 
 
-
 
NC_013204  Elen_3000  cell envelope-related transcriptional attenuator  29.25 
 
 
495 aa  102  1e-20  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_2567  cell envelope-related transcriptional attenuator  33.04 
 
 
404 aa  100  5e-20  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
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